Spatial genetic structure of bristle-thighed curlews (Numenius tahitiensis): Breeding area differentiation not reflected on the non-breeding grounds
Sarah A. Sonsthagen, T. Lee Tibbitts, Robert E. Gill Jr., Ian S. Williams, Sandra L. Talbot
2015, Conservation Genetics (16) 223-233
Migratory birds occupy geographically and ecologically disparate areas during their annual cycle with conditions on breeding and non-breeding grounds playing separate and important roles in population dynamics. We used data from nuclear microsatellite and mitochondrial DNA control region loci to assess the breeding and non-breeding spatial genetic structure of a...
Site-scale disturbance and habitat development best predict an index of amphibian biotic integrity in Ohio shrub and forested wetlands
Mick Micacchion, Martin A. Stapanian, Jean V. Adams
2015, Wetlands (35) 509-519
We determined the best predictors of an index of amphibian biotic integrity calculated from 54 shrub and forested wetlands in Ohio, USA using a two-step sequential holdout validation procedure. We considered 13 variables as predictors: four metrics of wetland condition from the Ohio Rapid Assessment Method (ORAM), a wetland vegetation...
Integrated survival analysis using an event-time approach in a Bayesian framework
Daniel P. Walsh, VJ Dreitz, Dennis M. Heisey
2015, Ecology and Evolution (5) 769-780
Event-time or continuous-time statistical approaches have been applied throughout the biostatistical literature and have led to numerous scientific advances. However, these techniques have traditionally relied on knowing failure times. This has limited application of these analyses, particularly, within the ecological field where fates of marked animals may be unknown. To...
Ephemeral stream reaches preserve the evolutionary and distributional history of threespine stickleback in the Santa Clara and Ventura River watersheds of southern California
Jonathan Q. Richmond, David K. Jacobs, Adam R. Backlin, Camm C. Swift, Chris Dellith, Robert N. Fisher
2015, Conservation Genetics (16) 85-101
Much remains to be understood about the evolutionary history and contemporary landscape genetics of unarmored threespine stickleback in southern California, where populations collectively referred to as Gasterosteus aculeatus williamsoni have severely declined over the past 70+ years and are now endangered. We used mitochondrial sequence and microsatellite data to assess...
An open-population hierarchical distance sampling model
Rachel Sollmann, Beth Gardner, Richard B Chandler, J. Andrew Royle, T Scott Sillett
2015, Ecology (96) 325-331
Modeling population dynamics while accounting for imperfect detection is essential to monitoring programs. Distance sampling allows estimating population size while accounting for imperfect detection, but existing methods do not allow for direct estimation of demographic parameters. We develop a model that uses temporal correlation in abundance arising from underlying population...
Nest visits and capture events affect breeding success of Yellow-billed and Pacific loons
Brian D. Uher-Koch, Joel A. Schmutz, Kenneth G. Wright
2015, Condor (7) 121-129
Accurate estimates of breeding success are essential for understanding population dynamics and for managing populations. Unfortunately, research activities to collect these data can negatively impact the breeding success of the study species and bias estimates of breeding success. Despite the potential for negative impacts, few studies have documented the effect...
Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
Brian K. Hand, Tyler D Hether, Ryan P. Kovach, Clint C. Muhlfeld, Stephen J. Amish, Matthew C. Boyer, Sean M. O’Rourke, Michael R. Miller, Winsor H. Lowe, Paul A. Hohenlohe, Gordon Luikart
2015, Current Zoology (61) 146-154
Invasive hybridization and introgression pose a serious threat to the persistence of many native species. Understanding the effects of hybridization on native populations (e.g., fitness consequences) requires numerous species-diagnostic loci distributed genome-wide. Here we used RAD sequencing to discover thousands of single-nucleotide polymorphisms (SNPs) that are diagnostic between rainbow trout...
In the path of destruction - eyewitness chronicles of Mount St. Helens
Richard B. Waitt
2015, Book
A geologist with intimate knowledge of Mount St. Helens, Richard Waitt chronicles the eruption through unforgettable, riveting narratives—the heart of a masterful chronology that also delivers engrossing science, history, and journalism....
Do shrubs reduce the adverse effects of grazing on soil properties?
David J. Eldridge, Genevieve Beecham, James B. Grace
2015, Ecohydrology (8) 1503-1513
Increases in the density of woody plants are a global phenomenon in drylands, and large aggregations of shrubs, in particular, are regarded as being indicative of dysfunctional ecosystems. There is increasing evidence that overgrazing by livestock reduces ecosystem functions in shrublands, but that shrubs may buffer the negative effects of...
Flow cytometric method for measuring chromatin fragmentation in fixed sperm from yellow perch (Perca flavescens)
Jill A. Jenkins, Rassa O. Draugelis-Dale, Alfred E. Pinkney, Luke R. Iwanowicz, Vicki Blazer
2015, Theriogenology (83) 920-931
Declining harvests of yellow perch, Perca flavescens, in urbanized watersheds of Chesapeake Bay have prompted investigations of their reproductive fitness. The purpose of this study was to establish a flow cytometric technique for DNA analysis of fixed samples sent from the field to provide reliable gamete quality measurements. Similar to the...
Evaluation of satellite rainfall estimates for drought and flood monitoring in Mozambique
Carolien Tote, Domingos Patricio, Hendrik Boogaard, Raymond van der Wijngaart, Elena Tarnavsky, Christopher C. Funk
2015, Remote Sensing (7) 1758-1776
Satellite derived rainfall products are useful for drought and flood early warning and overcome the problem of sparse, unevenly distributed and erratic rain gauge observations, provided their accuracy is well known. Mozambique is highly vulnerable to extreme weather events such as major droughts and floods and thus, an understanding of...
Reducing nitrogen export from the corn belt to the Gulf of Mexico: agricultural strategies for remediating hypoxia
Eileen McLellan, Dale M. Robertson, Keith Schilling, Mark Tomer, Jill Kostel, Douglas G. Smith, Kevin King
2015, Journal of the American Water Resources Association (51) 263-289
SPAtially Referenced Regression on Watershed models developed for the Upper Midwest were used to help evaluate the nitrogen-load reductions likely to be achieved by a variety of agricultural conservation practices in the Upper Mississippi-Ohio River Basin (UMORB) and to compare these reductions to the 45% nitrogen-load reduction proposed to remediate...
Vegetation burn severity mapping using Landsat-8 and WorldView-2
Zhuoting Wu, Barry R. Middleton, Robert Hetzler, John M. Vogel, Dennis G. Dye
2015, Photogrammetric Engineering and Remote Sensing (2) 143-154
We used remotely sensed data from the Landsat-8 and WorldView-2 satellites to estimate vegetation burn severity of the Creek Fire on the San Carlos Apache Reservation, where wildfire occurrences affect the Tribe's crucial livestock and logging industries. Accurate pre- and post-fire canopy maps at high (0.5-meter) resolution were created from...
Vegetation and non-native ungulate monitoring at the Big Island National Wildlife Refuge Complex 2010–2014.
Steven C. Hess, Christina R. Leopold, Steven J. Kendall
2015, Technical Report HCSU-062
The Hakalau Forest Unit (HFU) of Big Island National Wildlife Refuge Complex (BINWRC) has intensively managed feral cattle (Bos taurus) and pigs (Sus scrofa) and monitored non-native ungulate presence and distribution during surveys of all managed areas since 1988. We: 1) provide results from recent ungulate surveys at HFU to...
Anomalous solute transport in saturated porous media: Relating transport model parameters to electrical and nuclear magnetic resonance properties
Ryan D Swanson, Andrew Binley, Kristina Keating, Samantha France, Gordon Osterman, Frederick D. Day-Lewis, Kamini Singha
2015, Water Resources Research (51) 1264-1283
The advection-dispersion equation (ADE) fails to describe commonly observed non-Fickian solute transport in saturated porous media, necessitating the use of other models such as the dual-domain mass-transfer (DDMT) model. DDMT model parameters are commonly calibrated via curve fitting, providing little insight into the relation between effective parameters and physical properties...
Ecosystem-atmosphere exchange of CO2 in a temperate herbaceous peatland in the Sanjiang Plain of northeast China
Xiaoyan Zhu, Changchun Song, Christopher M. Swarzenski, Yuedong Guo, Xinhow Zhang, Jiaoyue Wang
2015, Ecological Engineering (75) 16-23
Northern peatlands contain a considerable share of the terrestrial carbon pool, which will be affected by future climatic variability. Using the static chamber technique, we investigated ecosystem respiration and soil respiration over two growing seasons (2012 and 2013) in a Carex lasiocarpa-dominated peatland in the Sanjiang Plain in China. We...
Inter-annual and spatial variability of Hamon potential evapotranspiration model coefficients
Gregory J. McCabe, Lauren E. Hay, Andy Bock, Steven L. Markstrom, R. Dwight Atkinson
2015, Journal of Hydrology (521) 389-394
Monthly calibrated values of the Hamon PET coefficient (C) are determined for 109,951 hydrologic response units (HRUs) across the conterminous United States (U.S.). The calibrated coefficient values are determined by matching calculated mean monthly Hamon PET to mean monthly free-water surface evaporation. For most locations and months the calibrated coefficients...
Microscopical characterization of carbon materials derived from coal and petroleum and their interaction phenomena in making steel electrodes, anodes and cathode blocks for the Microscopy of Carbon Materials Working Group of the ICCP
G. Predeanu, C. Panaitescu, M. Bălănescu, G. Bieg, A.G. Borrego, M. A. Diez, Paul C. Hackley, B. Kwiecinska, M. Marques, Maria Mastalerz, M. Misz-Kennan, S. Pusz, I. Suarez-Ruiz, S. Rodrigues, A. K. Singh, A. K. Varma, A. Zdravkov, D. Zivotić
2015, International Journal of Coal Geology (139) 63-79
This paper describes the evaluation of petrographic textures representing the structural organization of the organic matter derived from coal and petroleum and their interaction phenomena in the making of steel electrodes, anodes and cathode blocks.This work represents the results of the Microscopy of Carbon Materials Working Group in...
Development of a new semi-analytical model for cross-borehole flow experiments in fractured media
Delphine Roubinet, James Irving, Frederick D. Day-Lewis
2015, Advances in Water Resources (76) 97-108
Analysis of borehole flow logs is a valuable technique for identifying the presence of fractures in the subsurface and estimating properties such as fracture connectivity, transmissivity and storativity. However, such estimation requires the development of analytical and/or numerical modeling tools that are well adapted to the complexity of the problem....
Magmatic gas emissions at Holocene volcanic features near Mono Lake, California, and their relation to regional magmatism
D. Bergfeld, William C. Evans, James F. Howle, Andrew G. Hunt
2015, Journal of Volcanology and Geothermal Research (292) 70-83
Silicic lavas have erupted repeatedly in the Mono Basin over the past few thousand years, forming the massive domes and coulees of the Mono Craters chain and the smaller island vents in Mono Lake. We report here on the first systematic study of magmatic CO2 emissions from these features, conducted during...
The role of water in unconventional in situ energy resource extraction technologies
Tanya J. Gallegos, Carleton R. Bern, Justin E. Birdwell, Seth S. Haines, Mark A. Engle
Satinder Ahuja, editor(s)
2015, Book chapter, Food, energy, and water: The chemistry connection
Global trends toward developing new energy resources from lower grade, larger tonnage deposits that are not generally accessible using “conventional” extraction methods involve variations of subsurface in situ extraction techniques including in situ oil shale retorting, hydraulic fracturing of petroleum reservoirs, and in situ recovery of uranium. Although these methods are...
A method for estimating the diffuse attenuation coefficient (KdPAR)from paired temperature sensors
Jordan S. Read, Kevin C. Rose, Luke A. Winslow, Emily K. Read
2015, Limnology and Oceanography: Methods (13) 53-61
A new method for estimating the diffuse attenuation coefficient for photosynthetically active radiation (KdPAR) from paired temperature sensors was derived. We show that during cases where the attenuation of penetrating shortwave solar radiation is the dominant source of temperature changes, time series measurements of water temperatures at multiple depths (z1 and z2)...
Aquatic invertebrate food base for waterbirds at Wetland Reserve Program easements in the lower Mississippi Alluvial Valley
Jessica L. Tapp, Elisabeth B. Webb
2015, Wetlands (35) 183-192
Migratory waterbirds depend on invertebrates as a key source of dietary protein, but few studies have quantified aquatic invertebrates or their response to management on privately owned wetlands. Our objectives were to quantify the effects of wetland management provided through the Migratory Bird Habitat Initiative (MBHI) on invertebrate biomass, family...
Tectonic activity as a significant source of crustal tetrafluoromethane emissions to the atmosphere: observations in groundwaters along the San Andreas Fault
Daniel A. Deeds, Justin T. Kulongoski, Jens Muhle, Ray F. Weiss
2015, Earth and Planetary Science Letters (412) 163-172
Tetrafluoromethane (CF4) concentrations were measured in 14 groundwater samples from the Cuyama Valley, Mil Potrero and Cuddy Valley aquifers along the Big Bend section of the San Andreas Fault System (SAFS) in California to assess whether tectonic activity in this region is a significant source of crustal CF4 to the...
Preliminary evaluation of an in vivo fluorometer to quantify algal periphyton biomass and community composition
Theodore D. Harris, Jennifer L. Graham
2015, Lake and Reservoir Management (31) 127-133
The bbe-Moldaenke BenthoTorch (BT) is an in vivo fluorometer designed to quantify algal biomass and community composition in benthic environments. The BT quantifies total algal biomass via chlorophyll a (Chl-a) concentration and may differentiate among cyanobacteria, green algae, and diatoms based on pigment fluorescence. To evaluate how BT measurements of...
