Habitat prioritization across large landscapes, multiple seasons, and novel areas: an example using greater sage-grouse in Wyoming
Bradley C. Fedy, Kevin E. Doherty, Cameron L. Aldridge, Michael S. O’Donnell, Jeffrey L. Beck, Bryan Bedrosian, David Gummer, Matthew J. Holloran, Gregory D. Johnson, Nicholas W. Kaczor, Christopher P. Kirol, Cheryl A. Mandich, David Marshall, Gwyn McKee, Chad Olson, Aaron C. Pratt, Christopher C. Swanson, Brett L. Walker
2014, Wildlife Monographs (190) 1-39
Animal habitat selection is an important and expansive area of research in ecology. In particular, the study of habitat selection is critical in habitat prioritization efforts for species of conservation concern. Landscape planning for species is happening at ever-increasing extents because of the appreciation for the role of landscape-scale patterns...
Gully monitoring at two locations in the Grand Canyon National Park, Arizona, 1996-2010, with emphasis on documenting effects of the March 2008 high-flow experiment
Nathan D. Schott, Joseph E. Hazel Jr., Helen C. Fairley, Matt Kaplinski, Roderic A. Parnell
2014, Open-File Report 2014-1211
Many archeological sites in the Grand Canyon are being impacted by gully incision. In March 2008, a high-flow experiment (2008 HFE) was conducted with the intention of redistributing fine sediment (sand, silt, and clay) from the bed of the Colorado River to higher elevations along the channel margin. Deposition of...
Spectral masking of goethite in abandoned mine drainage systems: implications for Mars
Selby Cull, Charles A. Cravotta III,, Julia Grace Klinges, Chloe Weeks
2014, Earth and Planetary Science Letters (403) 217-224
Remote sensing studies of the surface of Mars use visible- to near-infrared (VNIR) spectroscopy to identify hydrated and hydroxylated minerals, which can be used to constrain past environmental conditions on the surface of Mars. However, due to differences in optical properties, some hydrated phases can mask others in VNIR spectra,...
Comparison of survival patterns of northern and southern genotypes of the North American tick Ixodes scapularis (Acari: Ixodidae) under northern and southern conditions
Howard S. Ginsberg, Eric L. Rulison, Alexandra Azevedo, Genevieve C. Pang, Isis M. Kuczaj, Jean I. Tsao, Roger A. LeBrun
2014, Parasites & Vectors (7)
BackgroundSeveral investigators have reported genetic differences between northern and southern populations of Ixodes scapularis in North America, as well as differences in patterns of disease transmission. Ecological and behavioral correlates of these genetic differences, which might have implications for disease transmission, have not been reported....
Runoff sources and flowpaths in a partially burned, upland boreal catchment underlain by permafrost
Joshua C. Koch, Colin P. Kikuchi, Kimberly P. Wickland, Paul Schuster
2014, Water Resources Research (50) 8141-8158
Boreal soils in permafrost regions contain vast quantities of frozen organic material that is released to terrestrial and aquatic environments via subsurface flowpaths as permafrost thaws. Longer flowpaths may allow chemical reduction of solutes, nutrients, and contaminants, with implications for greenhouse gas emissions and aqueous export. Predicting boreal catchment runoff...
Water-level altitudes 2014 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2013 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas
Mark C. Kasmarek, Michaela R. Johnson, Jason K. Ramage
2014, Scientific Investigations Map 3308
Most of the land-surface subsidence in the Houston-Galveston region, Texas, has occurred as a direct result of groundwater withdrawals for municipal supply, commercial and industrial use, and irrigation that depressured and dewatered the Chicot and Evangeline aquifers, thereby causing compaction of the aquifer sediments, mostly in the fine-grained clay and...
Sedimentary organic biomarkers suggest detrimental effects of PAHs on estuarine microbial biomass during the 20th century in San Francisco Bay, CA, USA
Elena B. Nilsen, Robert J. Rosenbauer, Christopher C. Fuller, Bruce E. Jaffe
2014, Chemosphere (119) 961-970
Hydrocarbon contaminants are ubiquitous in urban aquatic ecosystems, and the ability of some microbial strains to degrade certain polycyclic aromatic hydrocarbons (PAHs) is well established. However, detrimental effects of petroleum hydrocarbon contamination on nondegrader microbial populations and photosynthetic organisms have not often been considered. In the current study, fatty acid...
Potential effects of existing and proposed groundwater withdrawals on water levels and natural groundwater discharge in Snake Valley, Juab and Millard Counties, Utah, White Pine County, Nevada, and surrounding areas in Utah and Nevada
Melissa D. Masbruch, Philip M. Gardner
2014, Open-File Report 2014-1176
Applications have been filed for several water-right changes and new water rights, with total withdrawals of about 1,800 acre-feet per year, in Snake Valley near Eskdale and Partoun, Utah. The Bureau of Land Management has identified 11 sites where the Bureau of Land Management holds water rights and 7 other...
An evaluation of remote sensing technologies for the detection of residual contamination at ready-for-anticipated use sites
E. Terrence Slonecker, Gary B. Fisher
2014, Open-File Report 2014-1197
Operational problems with site access and information, XRF instrument operation, and imagery collections hampered the effective data collection and analysis process. Of the 24 sites imaged and analyzed, 17 appeared to be relatively clean with no discernible metal contamination, hydrocarbons, or asbestos in the soil. None of the samples for...
Potential postwildfire debris-flow hazards: a prewildfire evaluation for the Sandia and Manzano Mountains and surrounding areas, central New Mexico
Anne C. Tillery, Jessica R. Haas, Lara W. Miller, Joe H. Scott, Matthew P. Thompson
2014, Scientific Investigations Report 2014-5161
Wildfire can drastically increase the probability of debris flows, a potentially hazardous and destructive form of mass wasting, in landscapes that have otherwise been stable throughout recent history. Although there is no way to know the exact location, extent, and severity of wildfire, or the subsequent rainfall intensity and duration...
Potassium-argon (argon-argon), structural fabrics
Michael A. Cosca
W. Jack Rink, Jereon Thompson, editor(s)
2014, Book chapter, Encyclopedia of scientific dating methods
Definition: 40Ar/39Ar geochronology of structural fabrics: The application of 40Ar/39Ar methods to date development of structural fabrics in geologic samples. Introduction: Structural fabrics develop during rock deformation at variable pressures (P), temperatures (T), fluid compositions (X), and time (t). Structural fabrics are represented in rocks by features such as foliations and...
Mountain pine beetle-caused mortality over eight years in two pine hosts in mixed conifer stands of the southern Rocky Mountains
Daniel R. West, Jennifer S. Briggs, William R. Jacobi, Jose F. Negron
2014, Forest Ecology and Management (334) 321-330
Eruptive mountain pine beetle (Dendroctonus ponderosae, MPB) populations have caused widespread mortality of pines throughout western North America since the late 1990s. Early work by A.D. Hopkins suggested that when alternate host species are available, MPB will prefer to breed in the host to which it has become adapted. In...
Comparing species distribution models constructed with different subsets of environmental predictors
David N. Bucklin, Mathieu Basille, Allison M. Benscoter, Laura A. Brandt, Frank J. Mazzotti, Stephanie S. Romañach, Carolina Speroterra, James I. Watling
2014, Diversity and Distributions (21) 23-35
Aim To assess the usefulness of combining climate predictors with additional types of environmental predictors in species distribution models for range-restricted species, using common correlative species distribution modelling approaches. Location Florida, USA Methods We used five different algorithms to create distribution models for 14 vertebrate species, using seven different predictor sets: two with bioclimate predictors...
Documentation of a groundwater flow model (SJRRPGW) for the San Joaquin River Restoration Program study area, California
Jonathan A. Traum, Steven P. Phillips, George L. V Bennett V, Celia Zamora, Loren F. Metzger
2014, Scientific Investigations Report 2014-5148
To better understand the potential effects of restoration flows on existing drainage problems, anticipated as a result of the San Joaquin River Restoration Program (SJRRP), the U.S. Geological Survey (USGS), in cooperation with the U.S. Bureau of Reclamation (Reclamation), developed a groundwater flow model (SJRRPGW) of the SJRRP study area...
Post-mortem sporulation of Ceratomyxa shasta (Myxozoa) after death in adult Chinook salmon
Michael L. Kent, K. Soderlund, E. Thomann, Carl B. Schreck, T.J. Sharpton
2014, Journal of Parasitology (100) 679-683
Ceratomyxa shasta (Myxozoa) is a common gastrointestinal pathogen of salmonid fishes in the Pacific Northwest of the United States. We have been investigating this parasite in adult Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River, Oregon. In prior work, we observed differences in the pattern of development of C. shasta...
Methane hydrates in nature - Current knowledge and challenges
Timothy S. Collett
2014, Journal of Chemical and Engineering Data (60) 319-329
Recognizing the importance of methane hydrate research and the need for a coordinated effort, the United States Congress enacted the Methane Hydrate Research and Development Act of 2000. At the same time, the Ministry of International Trade and Industry in Japan launched a research program to develop plans for a...
Simulation of groundwater flow and the interaction of groundwater and surface water in the Willamette Basin and Central Willamette subbasin, Oregon
Nora B. Herrera, Erick R. Burns, Terrence D. Conlon
2014, Scientific Investigations Report 2014-5136
Full appropriation of tributary streamflow during summer, a growing population, and agricultural needs are increasing the demand for groundwater in the Willamette Basin. Greater groundwater use could diminish streamflow and create seasonal and long-term declines in groundwater levels. The U.S. Geological Survey (USGS) and the Oregon Water Resources Department (OWRD)...
Seasonal weather patterns drive population vital rates and persistence in a stream fish
Yoichiro Kanno, Benjamin Letcher, Nathaniel P. Hitt, David A. Boughton, John E. B. Wofford, Elise Zipkin
2014, Global Change Biology (21) 1856-1870
Climate change affects seasonal weather patterns, but little is known about the relative importance of seasonal weather patterns on animal population vital rates. Even when such information exists, data are typically only available from intensive fieldwork (e.g., mark–recapture studies) at a limited spatial extent. Here, we investigated effects of seasonal...
A cross-validation package driving Netica with python
Michael N. Fienen, Nathaniel G. Plant
2014, Environmental Modelling and Software (63) 14-23
Bayesian networks (BNs) are powerful tools for probabilistically simulating natural systems and emulating process models. Cross validation is a technique to avoid overfitting resulting from overly complex BNs. Overfitting reduces predictive skill. Cross-validation for BNs is known but rarely implemented due partly to a lack of software tools designed to...
The effects of Missouri River mainstem reservoir system operations on 2011 flooding using a Precipitation-Runoff Modeling System model
Adel E. Haj Jr., Daniel E. Christiansen, Roland J. Viger
2014, Professional Paper 1798-K
In 2011 the Missouri River Mainstem Reservoir System (Reservoir System) experienced the largest volume of flood waters since the initiation of record-keeping in the nineteenth century. The high levels of runoff from both snowpack and rainfall stressed the Reservoir System’s capacity to control flood waters and caused massive damage and...
Surveillance for zoonotic and selected pathogens in harbor seals Phoca vitulina from central California
Denise J. Greig, S. Ip, Frances M. D. Gulland, Woutrina A. Miller, Patricia A. Conrad, Cara L. Field, Michelle Fleetwood, James T. Harvey, Spencer Jang, Andrea Packham, Elizabeth Wheeler, Ailsa J. Hall
2014, Diseases of Aquatic Organisms (111) 93-106
The infection status of harbor seals Phoca vitulina in central California, USA, was evaluated through broad surveillance for pathogens in stranded and wild-caught animals from 2001 to 2008, with most samples collected in 2007 and 2008. Stranded animals from Mendocino County to San Luis Obispo County were sampled at a...
Fatal paralytic shellfish poisoning in Kittlitz's Murrelet (Brachyramphus brevirostris) nestlings, Alaska, USA
Valerie I. Shearn-Bochsler, Ellen W. Lance, Robin Corcoran, John F. Piatt, Barbara Bodenstein, Elizabeth Frame, James Lawonn
2014, Journal of Wildlife Diseases (50) 933-937
Paralytic shellfish poisoning (PSP) is an acute toxic illness in humans resulting from ingestion of shellfish contaminated with a suite of neurotoxins (saxitoxins) produced by marine dinoflagellates, most commonly in the genus Alexandrium. Poisoning also has been sporadically suspected and, less often, documented in marine wildlife, often in association with...
Avian influenza virus ecology in Iceland shorebirds: intercontinental reassortment and movement
Jeffrey S. Hall, Gunnar Thor Hallgrimsson, Kamol Suwannanarn, Srinand Sreevatsen, S. Ip, Joshua L. TeSlaa, Sean W. Nashold, Robert J. Dusek
2014, Infection, Genetics and Evolution (28) 130-136
Shorebirds are a primary reservoir of avian influenza viruses (AIV). We conducted surveillance studies in Iceland shorebird populations for 3 years, documenting high serological evidence of AIV exposure in shorebirds, primarily in Ruddy Turnstones (Arenaria interpres; seroprevalence = 75%). However, little evidence of virus infection was found in these shorebird...
Rapid mapping of ultrafine fault zone topography with structure from motion
Kendra Johnson, Edwin Nissen, Srikanth Saripalli, J. Ramon Arrowsmith, Patrick McGarey, Katherine M. Scharer, Patrick Williams, Kimberly Blisniuk
2014, Geosphere (10) 969-986
Structure from Motion (SfM) generates high-resolution topography and coregistered texture (color) from an unstructured set of overlapping photographs taken from varying viewpoints, overcoming many of the cost, time, and logistical limitations of Light Detection and Ranging (LiDAR) and other topographic surveying methods. This paper provides the first investigation of SfM...
Interspecific nest parasitism by chukar on greater sage-grouse
Michelle L. Fearon, Peter S. Coates
2014, Western Birds (45) 224-227
Nest parasitism occurs when a female bird lays eggs in the nest of another and the host incubates the eggs and may provide some form of parental care for the offspring (Lyon and Eadie 1991). Precocial birds (e.g., Galliformes and Anseriformes) are typically facultative nest parasites of both their own...