High abundance of a single taxon (amphipods) predicts aquatic macrophyte biodiversity in prairie wetlands
Danelle M. Larson, Demmey DeJong, Michael J. Anteau, Megan J. Fitzpatrick, Breanna R. Keith, Emily G. Schilling, Barry Thoele
2022, Conservation Biology (31) 1073-1093
Conservation programs often aim to protect the abundance of individual species and biodiversity simultaneously. We quantified relations between amphipod densities and aquatic macrophyte (large plants and algae) diversity to test a hypothesis that biodiversity can support high abundance of a single taxonomic group. Amphipods (Gammarus lacustris and Hyalella...
Genetic assignment of fisheries bycatch reveals disproportionate mortality among Alaska Northern Fulmar breeding colonies
Diana S. Baetscher, Jessie Beck, Eric C. Anderson, Kristen Ruegg, Andrew M. Ramey, Scott Hatch, HannahRose M. Nevins, Shannon Fitzgerald, J Carlos Garza
2022, Evolutionary Applications (15) 447-458
Global fisheries kill millions of seabirds annually through bycatch, but little is known about population-level impacts, particularly in species that form metapopulations. U.S. North Pacific groundfish fisheries catch thousands of Northern Fulmars (Fulmarus glacialis rodgersii) each year, making fulmars the most frequently caught seabird in federally...
Fishway Entrance Palisade
Kevin Mulligan, Richard Palmer, Brett Towler, Alexander Haro, Bjorn Lake, Marcia Rojas, Elizabeth Lotter
2022, Report
This technical report summarizes the work that was conducted by the University of Massachusetts Amherst and the United States Geological Survey (USGS), along with other project partners, on the Fishway Entrance Palisade (EP), a projected funded through the Department of Energy’s (DOE) funding opportunity titled ‘Innovative Solutions for Fish Passage...
A statistical framework for integrating nonparametric proxy distributions into geological reconstructions of relative sea level
Erica L. Ashe, Nicole S. Khan, Lauren Toth, Andrea Dutton, Robert E. Kopp
2022, Advances in Statistical Climatology, Meteorology and Oceanography (8) 1-29
Robust, proxy-based reconstructions of relative sea-level (RSL) change are critical to distinguishing the processes that drive spatial and temporal sea-level variability. The relationships between individual proxies and RSL can be complex and are often poorly represented by traditional methods that assume Gaussian likelihood distributions. We develop a new statistical framework...
Three Mw ≥ 4.7 earthquakes within the Changning (China) shale gas field ruptured shallow faults intersecting with hydraulic fracturing wells
Shuai Wang, Guoyan Jiang, Xinglin Lei, Andrew J. Barbour, Xibin Tan, Caijun Xu, Xiwei Xu
2022, Journal of Geophysical Research B: Solid Earth (127)
From 2017 to 2019, three destructive earthquakes (27 January 2017 Mw 4.7, 16 December 2018 Mw 5.2, and 3 January 2019 Mw 4.8) occurred in the Changning shale gas field in the southwest Sichuan Basin, China. Previous seismological studies attributed these events to hydraulic fracturing (HF), but were unable to...
Fast rupture of the 2009 Mw 6.9 Canal de Ballenas earthquake in the Gulf of California dynamically triggers seismicity in California
Wenyuan Fan, Ryo Okuwaki, Andrew J. Barbour, Yihe Huang, Guoqing Lin, Elizabeth S. Cochran
2022, Geophysical Journal International (230) 528-541
In the Gulf of California, Mexico, the relative motion across the North America-Pacific boundary is accommodated by a series of marine transform faults and spreading centers. About 40 M>6 earthquakes have occurred in the region since 1960. On 3 August 2009, an Mw 6.9 earthquake occurred near Canal de Ballenas...
Experimental evaluation of predator exclosures on nest, chick, and adult survival of piping plovers
Michael J. Anteau, Rose J. Swift, Mark H. Sherfy, David N. Koons, Kristen S. Ellis, Terry L. Shaffer, Dustin L. Toy, Megan M. Ring
2022, Journal of Wildlife Management (86) 1-21
Species of conservation concern often receive intensive management to improve vital rates and facilitate recovery. Piping plovers (Charadrius melodus) are federally listed in the United States and concerns over nest depredation have prompted widespread use of plover-permeable predator exclosures placed around nests (0.5–2-m radius). While effectiveness of exclosures for improving...
NWTOPT — A hyperparameter optimization approach for selection of environmental model solver settings
Max William Newcomer, Randall J. Hunt
2022, Environmental Modelling and Software (147) 1-7
Hyperparameter optimization approaches were applied to improve performance and accuracy of groundwater flow models. Freely available new software, NWTOPT, is described that uses Tree of Parzen Estimators (TPE) and Random Search algorithms to optimize MODFLOW-NWTs solver settings. We ran 3500 trials on a steady-state and transient model. To quantify the...
Light and flow regimes regulate the metabolism of rivers
Emily. S Bernhardt, Philip Savoy, Michael J Vlah, Alison Paige Appling, Lauren E Koenig, Robert O Hall Jr., Maite Arroita, Joanna Blaszczak, Alice M. Carter, Matthew J. Cohen, Judson Harvey, James B. Heffernan, Ashley M. Helton, J.D. Hosen, Lily Kirk, William H. McDowell, Emily H. Stanley, Charles Yackulic, Nancy B. Grimm
2022, Proceedings of the National Academy of Sciences (119)
Mean annual temperature and mean annual precipitation drive much of the variation in productivity across Earth's terrestrial ecosystems but do not explain variation in gross primary productivity (GPP) or ecosystem respiration (ER) in flowing waters. We document substantial variation in the magnitude and seasonality of GPP and ER across 222...
Smoothed Particle Hydrodynamics simulations of reef surf zone processes driven by plunging irregular waves
Ryan J. Lowe, C. Altomare, Mark L. Buckley, Renan F. da Silva, Jeff E. Hansen, Dirk P. Rijnsdorp, J.M. Dominguez, A.J.C. Crespo
2022, Ocean Modelling (171)
As waves interact with the slopes of coral reefs and other steep bathymetry profiles, plunging breaking usually occurs where the free surface overturns and violent water motion is triggered. Resolving these surf zone processes pose significant challenges for conventional mesh-based hydrodynamic models, due to the rapidly-deforming nature of...
Immunological evidence of variation in exposure and immune response to Bacillus anthracis in herbivores of Kruger and Etosha National Parks
Sunday O. Ochai, Jan E. Crafford, Ayesha Hassim, Charles Byaruhanga, Yen-Hua Huang, Axel Hartmann, Edgar H. Dekker, O. Louis van Schalkwyk, Pauline L. Kamath, Wendy Christine Turner, Henriette van Heerden
2022, Frontiers in Immunology (13)
Exposure and immunity to generalist pathogens differ among host species and vary across spatial scales. Anthrax, caused by a multi-host bacterial pathogen, Bacillus anthracis, is enzootic in Kruger National Park (KNP), South Africa and Etosha National Park (ENP), Namibia. These parks share many of the same potential host species, yet the...
Observation-constrained multicycle dynamic models of the southern San Andreas and the northern San Jacinto Faults: Addressing complexity in paleoearthquake extent and recurrence with realistic 2D fault geometry
Dunyu Liu, Benchuan Duan, Katherine M. Scharer, Doug Yule
2022, JGR Solid Earth (127)
Understanding mechanical conditions that lead to complexity in earthquakes is important to seismic hazard analysis. In this study, we simulate physics-based multicycle dynamic models of the San Andreas fault (Carrizo through San Bernardino sections) and the San Jacinto fault (Claremont and Clark strands). We focus on a complex fault geometry...
Trends in volcano seismology: 2010 to 2020 and beyond
Weston Thelen, Robin Matoza, Alicia J. Hotovec-Ellis
2022, Bulletin of Volcanology (84)
Volcano seismology has been fundamental to our current understanding of crustal magma migration and eruption. The increasing availability of portable seismic networks with the creative use of seismic sources and ambient noise has led to a better understanding of the volcanic structure of many volcanoes and is producing increasingly detailed...
Parcel-level risk affects wildfire outcomes: Insights from pre-fire rapid assessment data for homes destroyed in 2020 East Troublesome Fire
James Meldrum, Christopher M. Barth, Julia B. Goolsby, Schelly K. Olson, Adam C. Gosey, James (Brad) White, Hannah Brenkert-Smith, Patricia A. Champ, Jamie Gomez
2022, Fire (5)
Parcel-level risk (PLR) describes how wildfire risk varies from home to home based on characteristics that relate to likely fire behavior, the susceptibility of homes to fire, and the ability of firefighters to safely access properties. Here, we describe the WiRē Rapid Assessment (RA), a parcel-level rapid...
Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed)
Dong-Ha Oh, Kurt P. Kowalski, Quynh Quach, Chathura Wijesinghege, Philippa Tanford, Maheshi Dassanayake, Keith Clay
2022, Molecular Ecology (31) 1142-1159
The rapid invasion of the non-native Phragmites australis (Poaceae, subfamily Arundinoideae) is a major threat to native wetland ecosystems in North America and elsewhere. We describe the first reference genome for P. australis and compare invasive (ssp. australis) and native (ssp. americanus) genotypes collected from replicated populations across the Laurentian Great Lakes to deduce genomic bases driving...
Epidemiological differences between sexes affect management efficacy in simulated chronic wasting disease systems
William J. Rogers, Ellen E. Brandell, Paul C. Cross
Hamish McCallum, editor(s)
2022, Journal of Applied Ecology (59) 1122-1133
Sex-based differences in physiology, behaviour and demography commonly result in differences in disease prevalence. However, sex differences in prevalence may reflect exposure rather than transmission, which could affect disease control programmes. One potential example is chronic wasting disease (CWD), which has been observed at greater prevalence among male than...
Population structure, intergroup interaction, and human contact govern infectious disease impacts in mountain gorilla populations
Christopher A. Whittier, Felicia B. Nutter, Philip L. F. Johnson, Paul C. Cross, James O. Lloyd-Smith, Barrett D. Slenning, Michael K. Stoskopf
2022, American Journal of Primatology (84)
Infectious zoonotic diseases are a threat to wildlife conservation and global health. They are especially a concern for wild apes, which are vulnerable to many human infectious diseases. As ecotourism, deforestation, and great ape field research increase, the threat of human-sourced infections to wild populations becomes more substantial and could...
Variation in foraging patterns as reflected by floral resources used by male vs female bees of selected species at Badlands National Park, SD
Diane L. Larson, Zachary M. Portman, Jennifer Larson, Deborah A. Buhl
2022, Arthropod-Plant Interactions (16) 145-157
Female and male bees forage for different reasons: females provision nests with pollen appropriate for larval development and consume nectar for energy while males need only fuel their own energetic requirements. The expectation, therefore, is that females should visit fewer floral resource species than males, due to females’ focus...
Impact of fluid-rock interaction on strength and hydraulic transmissivity rvolution in shear fractures under hydrothermal conditions
Tamara Nicole Jeppson, David A. Lockner
2022, Conference Paper, Proceedings, 47th workshop on geothermal reservoir engineering
Reactivated shear fractures contribute to the creation of pervasive fracture networks in geothermal systems. The creation, reactivation, and sustainability of fracture networks depend on complex coupling among thermal, hydraulic, mechanical, and chemical (THMC) processes. However, most laboratory experiments focus either solely on how fluid transport properties evolve in stationary fractures...
Stable isotopes provide insight into sources and cycling of N compounds in the Sacramento-San Joaquin Delta, California, USA
Joseph K. Fackrell, Tamara E. C. Kraus, Megan B. Young, Carol Kendall, Sara Peek
2022, Science of the Total Environment (816)
River deltas and their diverse array of aquatic environments are increasingly impacted by anthropogenic inputs of nitrogen (N). These inputs can alter the N biogeochemistry of these systems and promote undesirable phenomena including harmful algae blooms and invasive aquatic macrophytes. To examine N sources and biogeochemical processes in the...
Diverse native island flora shows rapid initial passive recovery after exotic herbivore removal on Santa Rosa Island, California
Diane M Thomson, Kathryn McEachern, Emily L Schultz, Kenneth G. Niessen, Dieter Wilken, Katherine A. Chess, Lauren F Cole, Ruth Y Oliver, Jennifer D Phillips, Acadia Tucker
2022, Biological Invasions (24) 2635-1649
Removing exotic vertebrates from islands is an increasingly common and potentially effective strategy for protecting biodiversity. Yet, surprisingly few studies evaluate large-scale effects of island removals on native plants. We surveyed 431 hectares of habitat in 7 canyons on Santa Rosa Island just after exotic herbivore...
Annotated bibliography of scientific research on pygmy rabbits published from 1990 to 2020
Nathan J. Kleist, Joshua S. Willems, Heidi L. Bencin, Alison C. Foster, Laine E. McCall, Jennifer K. Meineke, Erin E. Poor, Sarah K. Carter
2022, Open-File Report 2022-1003
Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) is creating a series of annotated bibliographies on topics...
Colorado and Landsat
U.S. Geological Survey
2022, Fact Sheet 2022-3004
Colorado’s geography seems designed to impress. Although the Rocky Mountains takes up only one-half of the State, more than 50 of its peaks rise at least 14,000 feet above sea level—far more “fourteeners” than any other State. Many of these mountains receive hundreds of inches of snow annually. The Rocky...
Report of the River Master of the Delaware River for the period December 1, 2011–November 30, 2012
Vincent J. DiFrenna, William J. Andrews, Kendra L. Russell, J. Michael Norris, Mason Jr.
2022, Open-File Report 2021-1095
A Decree of the Supreme Court of the United States, entered June 7, 1954, established the position of Delaware River Master within the U.S. Geological Survey. In addition, the Decree authorizes diversion of water from the Delaware River Basin and requires compensating releases from certain reservoirs, owned by New York...
Yucaipa valley integrated hydrological model
Ayman H. Alzraiee, John A. Engott, Geoffrey Cromwell, Linda R. Woolfenden
2022, Scientific Investigations Report 2021-5118-B
IntroductionThe hydrologic system in the Yucaipa Valley watershed (YVW) was simulated using the coupled Groundwater and Surface-water FLOW model (GSFLOW; Markstrom and others, 2008). This study uses version 2.0 of GSFLOW, which is a combination of the Precipitation-Runoff Modeling System (PRMS; Markstrom and others, 2015), and the Newton-Raphson formulation of...