Standardized IMGT nomenclature of salmonidae IGH genes, the paradigm of Atlantic salmon and rainbow trout: From genomics to repertoires
Susana Magadan, Aleksei Krasnov, Saida Hadi-Saljoki, Sergey Afanasyev, Stanislas Mondot, Rosario Castro, Irene Salinas, Oriol Sunyer, John D. Hansen, Ben F Koop, Marie-Paule Lefranc, Pierre Boudinot
2019, Frontiers in Immunology (10)
In teleost fish as in mammals, humoral adaptive immunity is based on B lymphocytes expressing highly diverse immunoglobulins (IG). During B cell differentiation, IG loci are subjected to genomic rearrangements of V, D, and J genes, producing a unique antigen receptor expressed on the surface of each lymphocyte. During the...
The importance of natural versus human factors for ecological conditions of streams and rivers
Tao Tang, R. Jan Stevenson, James Grace
2019, Science of the Total Environment (704)
Streams are influenced by watershed-scale factors, such as climate, geology, topography, hydrology, and soils, which mostly vary naturally among sites, as well as human factors, agriculture and urban development. Thus, natural factors could complicate assessment of human disturbance. In the present study, we use structural equation modeling and data from...
Seasonal epilimnetic temperature patterns and trends in a suite of lakes from Wisconsin (USA), Germany and Finland
Richard C. Lathrop, Peter Kasprzak, Marjo Tarvainen, Anne-Mari Ventela, Tapio Keskinen, Rainer Koschel, Dale M. Robertson
2019, Inland Waters (9) 471-488
Epilimnetic temperatures from the early 1980s through 2017 were analyzed for 12 Wisconsin, German and Finnish lakes. Seasonal temperature metrics exhibited large interannual variability with trends differing among regions. In the Wisconsin lakes, only late summer and fall temperatures increased significantly. In the northeastern Germany lakes, temperatures increased in all...
Spatio-temporal variability of human-fire interactions on the Navajo Nation
Christopher H. Guiterman, Ellis Q. Margolis, Christopher H. Baisan, Donald A. Falk, Craig D. Allen, Thomas W. Swetnam
2019, Ecosphere (10)
Unraveling the effects of climate and land-use on historical fire regimes provides important insights into broader human-fire-climate dynamics, which are necessary for ecologically-based forest management. We developed a spatial human land-use model for Navajo Nation forests across which we sampled a network of tree-ring fire history sites to reflect contrasting...
A statistical forecasting approach to metapopulation viability analysis
Paige E. Howell, Blake R. Hossack, Erin L. Muths, Brent Sigafus, A Chenevert-Steffler, Richard B. Chandler
2019, Ecological Applications (30)
Conservation of at‐risk species is aided by reliable forecasts of the consequences of environmental change and management actions on population viability. Forecasts from conventional population viability analysis (PVA) are made using a two‐step procedure in which parameters are estimated, or elicited from expert opinion, and then...
The complexity of mudstone diagenesis - some insight from the Tøyen Formation, Lower to Middle Ordovician, southern Sweden
Sven Egenhoff, Neil Fishman, Heather A. Lowers, Per Ahlberg
2019, GFF (141) 54-67
The Lower to Middle Ordovician Tøyen Shale in southern Sweden, a biostratigraphically well-dated siliciclastic mudstone unit, shows 18 distinct authigenic cements that include sulfides, carbonates, silicates, clays, and phosphates. Marcasite, sphalerite, galena, and six texturally distinct types of pyrite characterize the sulfides whereas only one type of...
Temporal variation in genetic structure within the threatened spectacled eider
Sarah A. Sonsthagen, Christy Haughey, Matthew G. Sexson, Diana V Solovyeva, Margaret R. Petersen, Abby Powell
2019, Conservation Genetics (21) 175-179
We examined the genetic structure of the threatened spectacled eider 14–18 years after the initial assessment to evaluate the influence of population recovery on diversity. Concordant with the initial assessment, spectacled eiders were highly structured at mitochondrial (mt) DNA and lacked differentiation at microsatellite loci. The degree and...
Within-group relatedness and patterns of reproductive sharing and cooperation in the tropical chestnut-crested yuhina
Sara A. Kaiser, Thomas E. Martin, Juan C. Oteyza, Julie E. Danner, Connor E. Armstad, Robert C. Fleischer
2019, Animal Behaviour (158) 89-99
In cooperatively breeding animals, genetic relatedness among group members often determines the extent of reproductive sharing, cooperation and competition within a group. Studies of species for which cooperative behaviour is not entirely based on kinship are key for understanding the benefits...
Simple metrics predict salt-marsh sediment fluxes
Daniel J. Nowacki, Neil K. Ganju
2019, Geophysical Research Letters (46) 12250-12257
The growth (or decay) of salt marshes depends on suspended-sediment flux into and out of the marsh. Suspended-sediment concentration (SSC) is a key element of the flux, and SSC-based metrics reflect the long-term sediment-flux trajectories of a variety of salt marshes. One metric, the flood–ebb SSC differential, correlates with area-normalized...
Estimating the value of mangrove leaf litter in sesarmid crab diets: The importance of fractionation factors
R.A. MacKenzie, N. Cormier, Amanda Demopoulos
2019, Bulletin of Marine Science (96) 501-520
Sesarmid crabs play an important role in organic matter and carbon cycling of mangrove forests. Visual observations and gut content studies have verified that sesarmid crabs are feeding on mangrove leaves, yet stable isotopes of carbon and nitrogen (13C and 15N) have indicated that leaf litter is not assimilated as a...
Variable normal-fault rupture behavior, northern Lost River fault zone, Idaho, USA
Christopher DuRoss, Michael P. Bunds, Ryan D. Gold, Richard W. Briggs, Nadine G. Reitman, Stephen Personius, Nathan A. Toke
2019, Geosphere (15) 1869-1892
The 1983 Mw 6.9 Borah Peak earthquake generated ∼36 km of surface rupture along the Thousand Springs and Warm Springs sections of the Lost River fault zone (LRFZ, Idaho, USA). Although the rupture is a well-studied example of multisegment surface faulting, ambiguity remains regarding the degree to which a bedrock...
Naturally occurring uranium in groundwater in northeastern Washington State
Sue C. Kahle
2019, Fact Sheet 2019-3069
Uranium is a radioactive element (radionuclide) that occurs naturally in rock, soil, and water, usually in low concentrations. Radionuclides are unstable atoms with excess energy and as radionuclides decay, they emit radiation. The uranium decay sequence also includes other radionuclides of concern such as radium and radon. This fact sheet...
Weed-suppressive bacteria fail to control bromus tectorum under field conditions
Kurt O Reinhart, Chris H Carlson, Kevin P Feris, Matthew Germino, Clancy J Jandreau, Brynne E. Lazarus, Jane M. Mangold, Dave W Pellatz, Philip Ramsey, Matthew J. Rinella, Morgan Valliant
2019, Rangeland Ecology & Management (73) 760-765
The exotic winter annual grass Bromus tectorum L. (downy brome or cheatgrass) infests millions of hectares of western rangelands. Weed-suppressive bacteria (ACK55 and D7 strains of Pseudomonas fluorescens Migula 1895) have been shown to reduce B. tectorum populations in eastern Washington. Unfortunately, outside of Washington, little is known about the efficacy of these or other weed-suppressive bacteria....
Geology and assessment of undiscovered oil and gas resources of the Lomonosov-Makarov Province, 2008
Thomas E. Moore, Kenneth J. Bird, Janet K. Pitman
Thomas E. Moore, Donald L. Gautier, editor(s)
2019, Professional Paper 1824-CC
The Lomonosov-Makarov Province lies in the central Arctic Ocean and encompasses the northern part of the oceanic Amerasia Basin (Makarov and Podvodnikov Basins) and the adjoining Lomonosov Ridge and Siberian continental margins. The Amerasia Basin is thought to have been created in the Jurassic and Early Cretaceous by rotational rifting...
Process-guided deep learning predictions of lake water temperature
Jordan S. Read, Xiaowei Jia, Jared Willard, Alison P. Appling, Jacob Aaron Zwart, Samantha K. Oliver, Anuj Karpatne, Gretchen J. A. Hansen, Paul C. Hanson, William Watkins, Michael Steinbach, Vipin Kumar
2019, Water Resources Research (55) 9173-9190
The rapid growth of data in water resources has created new opportunities to accelerate knowledge discovery with the use of advanced deep learning tools. Hybrid models that integrate theory with state‐of‐the art empirical techniques have the potential to improve predictions while remaining true to physical laws. This paper evaluates the...
Full Equations Model Graphical Data Inspector (FEQ–GDI) user guide
Jessica L. Ern, Terry Ortel, Audrey L. Ishii, Maitreyee Bera
2019, Open-File Report 2019-1113
The Full Equations Model Graphical Data Inspector (FEQ–GDI) is a menu-driven utility program that enables users to visualize and check the geometric and hydraulic properties of channel cross sections, selected control structures, and stream profiles in the input files for the Full Equations (FEQ) Model and the Full Equations Utilities...
Detailed Lithologic Logs from Auger Holes in southern Charleston County, southwestern Dorchester County, and eastern Colleton County, South Carolina
Robert E. Weems, William C. Lewis
2019, Open-File Report 2019-1119
The lithologic logs described in this open-file report are from holes augered in the South Carolina Low Country in parts of Charleston, Dorchester, and Colleton Counties from 1998 through 2010. Lithologic units described here include not only surficial Pleistocene units but also subsurface stratigraphic units ranging as far back in...
Nutritional status of honey bee (Apis mellifera L.) workers across an agricultural land-use gradient
Matthew Smart, Clint Otto, Jonathan G. Lundgren
2019, Scientific Reports (9)
Land use and habitat quality have emerged as critical factors influencing the health, productivity, and survival of honey bee colonies. However, characterization of the mechanistic relationship between differential land-use conditions and ultimate outcomes for honey bee colonies has been elusive. We assessed the physiological health of individual worker honey...
Soil aggregates as a source of dissolved organic carbon to streams: An experimental study on the effect of solution chemistry on water extractable carbon
Malayika M. Cincotta, Julia N. Perdrial, Aaron Shavitz, Arianna Libenson, Maxwell Landsman, Nicolas Perdrial, Jesse Armfield, Thomas Adler, James B. Shanley
2019, Frontiers in Environmental Science (7)
Over the past two decades, headwater streams of the northern hemisphere have shown increased amounts of dissolved organic carbon (DOC), coinciding with decreased acid deposition. The exact nature of the mechanistic link between precipitation composition and stream water DOC is still widely debated in the literature. We hypothesize that...
300,000 yr history of water-table fluctuations at Wind Cave, South Dakota, USA—Scale, timing, and groundwater mixing in the Madison Aquifer
James B. Paces, Margaret V. Palmer, Arthur N. Palmer, Andrew J. Long, Matthew P. Emmons
2019, GSA Bulletin (132) 1447-1468
Deposits of calcite coating the lower passages of Wind Cave in the southern Black Hills of South Dakota were precipitated under phreatic conditions. Data from samples associated with a new cave survey and hydrologic studies indicate that past water tables within Wind Cave reached a maximum height of 45 m...
Protracted multipulse emplacement of a post-resurgent pluton: The case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)
Filip Tomek, Amy K. Gilmer, M. S. Petronis, Peter W. Lipman, M. S. Foucher
2019, Geochemistry, Geophysics, Geosystems (20) 5225-5250
Many eroded calderas expose associated postcollapse plutons, but detailed fieldwork‐supported studies have rarely focused on the internal structure that can contribute to understanding of emplacement dynamics. The Alamosa River monzonite pluton is a postcollapse intrusion at the Platoro caldera complex that erupted six large ignimbrites between 30.2 and 28.8 Ma in...
Phytoplankton community and algal toxicity at a recurring bloom in Sullivan Bay, Kabetogama Lake, Minnesota, USA
Victoria Christensen, Ryan P. Maki, Erin A. Stelzer, Jack E. Norland, Eakalak Khan
2019, Scientific Reports (9)
Kabetogama Lake in Voyageurs National Park, Minnesota, USA suffers from recurring late summer algal blooms that often contain toxin-producing cyanobacteria. Previous research identified the toxin microcystin in blooms, but we wanted to better understand how the algal and cyanobacterial community changed throughout an open water season and how changes in...
Updates to the Madison Lake (Minnesota) CE–QUAL–W2 water-quality model for assessing algal community dynamics
Erik A. Smith, Richard L. Kiesling
2019, Scientific Investigations Report 2019-5124
A previously developed CE–QUAL–W2 model for Madison Lake, Minnesota, simulated the algal community dynamics, water quality, and fish habitat suitability of Madison Lake under recent (2014) meteorological conditions. Additionally, this previously developed model simulated the complex interplay between external nutrient loading, internal nutrient loading from sediment release of phosphorus, and...
The lava flow that came to Hilo—The 1880–81 eruption of Mauna Loa volcano, Island of Hawai‘i
James P. Kauahikaua, Ben Gaddis, Ku`ulei Kanahele, Ken Hon, Valerie Wasser
2019, Scientific Investigations Report 2019-5129
The Mauna Loa eruption sequence of 1880–81 consists of two eruptions. The May 1880 eruption in Mokuʻāweoweo at the summit of Mauna Loa lasted just a few days and was followed 6 months later by three lava flows that issued from vents along the Northeast Rift Zone. The November 1880...
Assessment of the impacts of image signal-to-noise ratios in impervious surface mapping
George Z. Xian, Hua Shi, Cody Anderson, Zhuoting Wu
2019, Remote Sensing (11)
Medium spatial resolution satellite images are frequently used to characterize thematic land cover and a continuous field at both regional and global scales. However, high spatial resolution remote sensing data can provide details in landscape structures, especially in the urban environment. With upgrades to spatial resolution and spectral coverage for...