Incorporating citizen science data in spatially explicit integrated population models
Catherine C. Sun, Andy Royle, Angela K. Fuller
2019, Ecology (100)
Information about population abundance, distribution, and demographic rates is critical for understanding a species’ ecology and for effective conservation and management. To collect data over large spatial and temporal extents for such inferences, especially for species with low densities or wide distributions, citizen science can be...
Water Resources of West Carroll Parish, Louisiana
Vincent E. White
2019, Fact Sheet 2018-3069
Information concerning the availability, use, and quality of water in West Carroll Parish, Louisiana, is critical for proper water-supply management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. In 2014, 21.27...
Water resources of Morehouse Parish, Louisiana
Vincent E. White
2019, Fact Sheet 2018-3068
Information concerning the availability, use, and quality of water in Morehouse Parish, Louisiana, is critical for proper water-supply management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. In 2014, 109.84 million...
Potential for improving among-reader precision and accuracy of Walleye age estimates with minimal training
Daniel J. Dembkowski, Daniel A. Isermann, Ryan P. Koenigs
2019, North American Journal of Fisheries Management (39) 625-636
Within most resource management agencies, fish ages assigned by multiple readers are used to estimate age-based population metrics and to develop state or regional growth standards under the assumption that among-reader precision and accuracy are high. A cursory evaluation suggested that precision of age estimates among...
Nonlinearities in transmission dynamics and efficient management of vector-borne pathogens
Howard S. Ginsberg, Jannelle Couret
2019, Ecological Applications (29) 1-14
Integrated Pest Management (IPM) is an approach to minimizing economic and environmental harm caused by pests, and Integrated Vector Management (IVM) uses similar methods to minimize pathogen transmission by vectors. The risk of acquiring a vector-borne infection is often quantified using the density of infected vectors. The relationship between...
Genetic tagging in the Anthropocene: Scaling ecology from alleles to ecosystems
Clayton T. Lamb, Adam T Ford, Michael Proctor, Andy Royle, Garth Mowat
2019, Ecological Applications (29) 1-17
The Anthropocene is an era of marked human impact on the world. Quantifying these impacts 51 has become central to understanding the dynamics of coupled human-natural systems, resource52 dependent livelihoods, and biodiversity conservation. Ecologists are facing growing pressure to 53 quantify the size, distribution, and trajectory of wild populations in...
Effect of amphibian chytrid fungus (Batrachochytrium dendrobatidis) on apparent survival of frogs and toads in the western USA
Robin E. Russell, Brian J. Halstead, Brittany Mosher, Erin L. Muths, Michael J. Adams, Evan H. Campbell Grant, Robert N. Fisher, Patrick M. Kleeman, Adam R. Backlin, Christopher Pearl, R. Ken Honeycutt, Blake R. Hossack
2019, Biological Conservation (236) 296-304
Despite increasing interest in determining the population-level effects of emerging infectious diseases on wildlife, estimating effects of disease on survival rates remains difficult. Even for a well-studied disease such as amphibian chytridiomycosis (caused by the fungus Batrachochytrium dendrobatidis [Bd]), there are few estimates...
Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate
Mozes P.K. Blom, Nicholas J Matzke, Jason G Bragg, Evy Arida, Christopher C. Austin, Adam R. Backlin, Miguel A Carretero, Robert N. Fisher, Frank Glaw, Stacie A. Hathaway, Djoko T Iskandar, Jimmy A. McGuire, Benjamin R. Karin, Sean B Reilly, Eric N Rittmeyer, Sara Rocha, Mickael Sanchez, Alexander L. Stubbs, Miguel Vences, Craig Moritz
2019, Proceedings of the Royal Society B: Biological Sciences (286)
The importance of long-distance dispersal (LDD) in shaping geographical distributions has been debated since the nineteenth century. In terrestrial vertebrates, LDD events across large water bodies are considered highly improbable, but organismal traits affecting dispersal capacity are generally not taken into account. Here, we focus on a recent lizard radiation...
Evaluation of land subsidence and ground failures at Bicycle Basin, Fort Irwin National Training Center, California, 1992–2017
Jill N. Densmore, Kevin M. Ellett, Michelle Sneed, Justin T. Brandt, James F. Howle, Andrew Y. Morita, Rodrigo Borela, Antonio Bobet, Drew C. Thayer
2019, Scientific Investigations Report 2019-5015
Groundwater has been pumped in the Bicycle Basin at Fort Irwin National Training Center since the 1960s, and the amount pumped has generally increased since the 1990s. After a large crack (approximately 0.5-kilometer long) formed at the surface of Bicycle Lake playa during 2005–06 in the area used as an aircraft runway, a monitoring study...
The development and delivery of species distribution models to inform decision-making
Helen Sofaer, Catherine S. Jarnevich, Ian S. Pearse, Regan L Smyth, Stephanie Auer, Cook Gericke L, Thomas C. Edwards Jr., Gerald F. Guala, Timothy G Howard, Jeffrey T. Morisette, Healy Hamilton
2019, BioScience (69) 544-557
Information on where species occur is central to conservation and management decisions, but knowledge of distributions can be coarse or incomplete. Species distribution models provide a tool for mapping suitable habitat, and can produce credible, defensible, and repeatable predictive information with which to inform decisions. However, these models are sensitive...
The risk reduction benefits of the Mesoamerican Reef in Mexico
Borja G. Reguero, Fernando Secaira, Alexandra Toimil, Mireille Escudero, Pedro Diaz-Simal, Michael W. Beck, Rodolfo Silva, Curt D. Storlazzi, Inigo Losada
2019, Frontiers in Earth Science (7)
Coastal development and climate change are dramatically increasing the risks of flooding, erosion, and extreme weather events. Coral reefs and other coastal ecosystems act as natural defenses against coastal hazards, but their degradation increases risk to people and property. Environmental degradation, however, has rarely been quantified as a driver of...
Gap Analysis Project (GAP) Terrestrial Vertebrate Species Richness Maps for the Conterminous U.S.
Kevin J. Gergely, Kenneth G. Boykin, Alexa McKerrow, Matthew J. Rubino, Nathan M. Tarr, Steven G. Williams
2019, Scientific Investigations Report 2019-5034
The mission of the Gap Analysis Project (GAP) is to support national and regional assessments of the conservation status of vertebrate species and plant communities. This report explains conterminous United States species richness maps created by the U.S. Geological Survey for four major classes in the phylum Chordata: mammals, birds,...
Integrating structure from motion, numerical modelling and field measurements to understand carbonate sediment transport in coral reef canopies
Andrew Pomeroy, Curt D. Storlazzi, Kurt J. Rosenberger, Gerry Hatcher, Jonathan A. Warrick
2019, Conference Paper, Coastal Sediments 2019 Proceedings
Reef canopies are complex and extremely variable across a range of spatial scales. This variability affects the velocity above as well as within the canopy, and directly impacts the transport of sediment along the bed as well as suspended in the water column. How a canopy affects the transport of...
The influence of sea level on incident and infragravity wave-driven sediment dynamics across a fringing coral reef
Curt D. Storlazzi, Olivia Cheriton, Kurt J. Rosenberger, Andrew Pomeroy, Ryan J. Lowe
2019, Conference Paper, Coastal Sediments 2019 Proceedings
Coral reefs generate significant volumes of carbonate sediment that becomes the primary source of beach material along many low-latitude shorelines that protect hundreds of millions of people globally. Despite this fact, there is little understanding of the specific processes that transport the carbonate sediment produced on the outer portions of...
Measuring settling velocity in a strongly tidal estuary
Rachel Allen, Jessica R. Lacy, Evan A Variano
2019, Conference Paper, Coastal Sediments 2019, Proceedings of the 9th International Conference
Predicting sediment transport in estuarine systems requires understanding sediment settling velocity, its range of fluctuations, and the shortcomings of the tools to measure it. Previous studies have used Laser In-Situ Scattering and Transmissometry (LISST) instruments to measure particle size and Acoustic Doppler Velocimeters (ADV) to return estimates of settling velocity....
Controls on sediment transport over coral reefs off southwest Puerto Rico: Seasonal patterns and Hurricane Maria
Olivia Cheriton, Curt D. Storlazzi, Kurt J. Rosenberger, Clark Sherman
2019, Conference Paper, Coastal Sediments 2019 Proceedings
Guánica Bay in southwest Puerto Rico is highly turbid and has some of the highest PCB concentrations in the USA. To investigate how and to what extent the bay waters influence coral reef ecosystem health along the coastline, 6 months of hydrodynamic data were collected at 8 sites on the...
Distribution of adult Chinook salmon (Oncorhynchus tshawytscha) in relation to water temperatures, Lake Scanewa, Cowlitz River, Washington, 2012
Tobias J. Kock, Brian K. Ekstrom, Theresa L. Liedtke
2019, Open-File Report 2019-1055
A trap-and-haul program is operated to move anadromous Pacific salmon (Oncorhynchus spp.) around dams and reservoirs in the Cowlitz River basin, Washington. The primary release site for adult fish is in Lake Scanewa, a small reservoir created by Cowlitz Falls Dam, the uppermost dam in the basin. Releases in...
Problems of Large Spatial Databases
E. Lynn Usery
2019, Book chapter, Geographic Information Science & Technology Body of Knowledge
Large spatial databases often labeled as geospatial big data exceed the capacity of commonly used computing systems as a result of data volume, variety, velocity, and veracity. Additional problems also labeled with V’s are cited, but the four primary ones are the most problematic and focus of this chapter (Li...
Geological and geophysical data for a three-dimensional view—Inside the San Juan and Silverton Calderas, Southern Rocky Mountains Volcanic Field, Silverton, Colorado
Douglas B. Yager, Eric D. Anderson, Maria Deszcz-Pan, Brian D. Rodriguez, Bruce D. Smith
2019, Fact Sheet 2019-3026
IntroductionThe San Juan-Silverton caldera complex located near Silverton, Colorado, in the Southern Rocky Mountains volcanic field is an ideal natural laboratory for furthering the understanding of shallow-to-deep volcanic-related mineral systems. Recent advances in geophysical data processing and three-dimensional (3D) model construction will help to characterize shallow properties important for understanding...
Bringing Bayesian models to life
Mevin Hooten, Trevor J. Hefley
2019, Book
Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific...
Contemporary human impacts on alpine ecosystems: the direct and indirect effects of human-induced climate change and land use
Daniel E. Winkler
2019, Book chapter, Reference Module in Earth Systems and Environmental Sciences
Alpine ecosystems account for ca. 3 % of terrestrial habitats yet, along with adjacent mountain systems, provide water resources to nearly half of the world’s human population. Approximately 20 % of humans live in or near mountain areas, making it inherently important to understand current impacts on these systems. Here,...
Integrating amphibian movement studies across scales better informs conservation decisions
Larissa L. Bailey, Erin L. Muths
2019, Biological Conservation (236) 261-268
Numerous papers have highlighted the need to integrate amphibian research and conservation across multiple scales. Despite this, most amphibian movement studies focus on a single level of organization (e.g., local population) and a single life stage (e.g., adults) and many suggest potential conservation actions or imply that the information is...
A physical model of the high-frequency seismic signal generated by debris flows
Maxime Farin, Victor C. Tsai, Michael P. Lamb, Kate E. Allstadt
2019, Earth Surface Processes and Landforms (44) 2529-2543
We propose a physical model for the high‐frequency (>1 Hz) spectral distribution of seismic power generated by debris flows. The modeled debris flow is assumed to have four regions where the impact rate and impulses are controlled by different mechanisms: the flow body, a coarser‐grained snout, a snout lip where...
Local niche differences predict genotype associations in sister taxa of desert tortoise
Richard D. Inman, A. Stewart Fotheringham, Janet Franklin, Todd Esque, Taylor Edwards, Kenneth Nussear
2019, Diversity and Distributions (25) 1194-1209
Aims To investigate spatial congruence between ecological niches and genotype in two allopatric species of desert tortoise that are species of conservation concern. Location Mojave and Sonoran Desert ecoregions; California, Nevada, Arizona, Utah, USA. Methods We compare ecological niches of Gopherus agassizii and Gopherus morafkai using species distribution modelling (SDM)...
Is there convergence of gut microbes in blood-feeding vertebrates?
Jin Song, Jon G Sanders, Daniel T Baldassarre, Jaime A Chaves, Nicholas S. Johnson, Antoinette J. Piaggio, Matthew J Stuckey, Eva Novakova, Jessica L Metcalf, Bruno B Chomel, Alvaro Aguilar-Setien, Rob Knight, Valerie J. McKenzie
2019, Philosophical Transactions of the Royal Society B: Biological Sciences (374)
Animal microbiomes play an important role in dietary adaptation, yet the extent to which microbiome changes exhibit parallel evolution is unclear. Of particular interest is an adaptation to extreme diets, such as blood, which poses special challenges in its content of proteins and lack of essential nutrients. In this study,...