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Everglades Depth Estimation Network (EDEN)—A decade of serving hydrologic information to scientists and resource managers
Eduardo Patino, Paul Conrads, Eric D. Swain, James M. Beerens
2018, Fact Sheet 2017-3069
IntroductionThe Everglades Depth Estimation Network (EDEN) provides scientists and resource managers with regional maps of daily water levels and depths in the freshwater part of the Greater Everglades landscape. The EDEN domain includes all or parts of five Water Conservation Areas, Big Cypress National Preserve, Pennsuco Wetlands, and Everglades National...
Landscape-scale processes influence riparian plant composition along a regulated river
Emily C. Palmquist, Barbara Ralston, David M. Merritt, Patrick B. Shafroth
2018, Journal of Arid Environments (148) 54-64
Hierarchical frameworks are useful constructs when exploring landscape- and local-scale factors affecting patterns of vegetation in riparian areas. In drylands, which have steep environmental gradients and high habitat heterogeneity, landscape-scale variables, such as climate, can change rapidly along a river's course, affecting the relative influence of environmental variables at different...
A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing
Thierry A. Chambert, J. Hardin Waddle, David A.W. Miller, Susan C. Walls, James D. Nichols
2018, Methods in Ecology and Evolution (9) 560-570
The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing...
Pneumonia in bighorn sheep: Risk and resilience
E. Frances Cassirer, Kezia R. Manlove, Emily S. Almberg, Pauline Kamath, Mike Cox, Peregrine L. Wolff, Annette Roug, Justin M. Shannon, Rusty Robinson, Richard B. Harris, Ben J. Gonzales, Raina K. Plowright, Peter J. Hudson, Paul C. Cross, Andrew Dobson, Thomas E. Besser
2018, Journal of Wildlife Management (82) 32-45
Infectious disease was an important driver of historic declines and extirpations of bighorn sheep (Ovis canadensis) in North America and continues to impede population restoration and management. Domestic sheep have long been linked to pneumonia outbreaks in bighorn sheep and this association has now been confirmed in 13 captive...
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan McIlroy, DeWayne R. Derryberry
2018, Ecological Indicators (84) 793-802
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature...
Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor
Steven T. Kessel, Darryl W. Hondorp, Christopher Holbrook, James C. Boase, Justin A. Chiotti, Michael V. Thomas, Todd C. Wills, Edward F. Roseman, Richard Drouin, Charles C. Krueger
2018, Journal of Animal Ecology (87) 259-273
Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or temporally-distributed...
At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)
Paul M. Oliver, Scott L Travers, Jonathan Q. Richmond, Patrick Pikacha, Robert N. Fisher
2018, Zoological Journal of the Linnean Society (182) 681-694
The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos (Cyrtodactylus) occur in...
Novel application of explicit dynamics occupancy models to ongoing aquatic invasions
Adam Sepulveda
2018, Journal of Applied Ecology (55) 917-925
Identification of suitable habitats, where invasive species can establish, is an important step towards controlling their spread. Accurate identification is difficult for new or slow invaders because unoccupied habitats may be suitable, given enough time for dispersal, while occupied habitats may prove to be unsuitable for establishment.To identify the suitable...
Overview of a compre­hensive resource database for the assessment of recoverable hydrocarbons produced by carbon dioxide enhanced oil recovery
Marshall Carolus, Khosrow Biglarbigi, Peter D. Warwick, Emil D. Attanasi, Philip A. Freeman, Celeste D. Lohr
2018, Techniques and Methods 7-C16
A database called the “Comprehensive Resource Database” (CRD) was prepared to support U.S. Geological Survey (USGS) assessments of technically recoverable hydrocarbons that might result from the injection of miscible or immiscible carbon dioxide (CO2) for enhanced oil recovery (EOR). The CRD was designed by INTEK Inc., a consulting company under...
Research note: Mapping spatial patterns in sewer age, material, and proximity to surface waterways to infer sewer leakage hotspots
Kristina G. Hopkins, Daniel J. Bain
2018, Landscape and Urban Planning (170) 320-324
Identifying areas where deteriorating sewer infrastructure is in close proximity to surface waterways is needed to map likely connections between sewers and streams. We present a method to estimate sewer installation year and deterioration status using historical maps of the sewer network, parcel-scale property assessment data, and pipe material. Areas...
Coherence between coastal and river flooding along the California coast
Kingsley O. Odigie, Jonathan A. Warrick
2018, Journal of Coastal Research (34) 308-317
Water levels around river mouths are intrinsically determined by sea level and river discharge. If storm-associated coastal water-level anomalies coincide with extreme river discharge, landscapes near river mouths will be flooded by the hydrodynamic interactions of these two water masses. Unfortunately, the temporal relationships between ocean and river water masses...
Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America
Thomas Binder, Steve A. Farha, Henry T. Thompson, Christopher Holbrook, Roger A. Bergstedt, Stephen Riley, Charles R. Bronte, Ji He, Charles C. Krueger
2018, Ecology of Freshwater Fish (27) 594-605
Previous studies of lake trout, Salvelinus namaycush, spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry...
Groundwater development stress: Global-scale indices compared to regional modeling
William Alley, Brian R. Clark, Matt Ely, Claudia C. Faunt
2018, Groundwater (56) 266-275
The increased availability of global datasets and technologies such as global hydrologic models and the Gravity Recovery and Climate Experiment (GRACE) satellites have resulted in a growing number of global-scale assessments of water availability using simple indices of water stress. Developed initially for surface water, such indices are increasingly used...
Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones
Alexander Y. Karatayev, Lyubov E. Burlakova, Knut Mehler, Serghei A. Bocaniov, Paris D. Collingsworth, Glenn Warren, Richard T. Kraus, Elizabeth K. Hinchey
2018, Journal of Great Lakes Research (44) 639-649
Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management...
Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter
Jennifer W. Harden, Gustaf Hugelius, Anders Ahlstrom, Joseph C. Blankinship, Ben Bond-Lamberty, Corey Lawrence, Julie Loisel, Avni Malhotra, Robert B. Jackson, Stephen M. Ogle, Claire Phillips, Rebecca Ryals, Katherine Todd-Brown, Rodrigo Vargas, Sintana E. Vergara, M. Francesca Cotrufo, Marco Keiluweit, Katherine Heckman, Susan E. Crow, Whendee L. Silver, Marcia DeLonge, Lucas E. Nave
2018, Global Change Biology (24) e705-e718
Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have...
Tagging effects of passive integrated transponder and visual implant elastomer on the small-bodied white sands pupfish (Cyprinodon tularosa)
Damon Peterson, Randi B. Trantham, Tulley G. Trantham, Colleen A. Caldwell
2018, Fisheries Research (198) 203-208
One of the greatest limiting factors of studies designed to obtain growth, movement, and survival in small-bodied fishes is the selection of a viable tag. The tag must be relatively small with respect to body size as to impart minimal sub-lethal effects on growth and mobility, as well as be...
Identifying species conservation strategies to reduce disease-associated declines
Brian D. Gerber, Sarah J. Converse, Erin L. Muths, Harry J. Crockett, Brittany A. Mosher, Larissa L. Bailey
2018, Conservation Letters (11) 1-10
Emerging infectious diseases (EIDs) are a salient threat to many animal taxa, causing local and global extinctions, altering communities and ecosystem function. The EID chytridiomycosis is a prominent driver of amphibian declines, which is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). To guide conservation policy, we developed a predictive decision-analytic model...
Long-term persistence and fire resilience of oak shrubfields in dry conifer forests of northern New Mexico
Christopher H. Guiterman, Ellis Margolis, Craig D. Allen, Donald A. Falk, Thomas W. Swetnam
2018, Ecosystems (21) 943-959
Extensive high-severity fires are creating large shrubfields in many dry conifer forests of the interior western USA, raising concerns about forest-to-shrub conversion. This study evaluates the role of disturbance in shrubfield formation, maintenance and succession in the Jemez Mountains, New Mexico. We compared the environmental conditions of extant Gambel oak...
Regeneration and invasion of cottonwood riparian forest following wildfire
Carissa L. Wonkka, Dirac Twidwell, Christine H. Bielski, Craig R. Allen, Michael C. Stambaugh
2018, Restoration Ecology (26) 456-465
Populus deltoides is considered to be a weak resprouter and highly susceptible to wildfire, but few post-wildfire studies have tracked P. deltoides response and resprouting within the Great Plains of North America. Following a wildfire in southwestern Kansas, U.S.A., we surveyed burned and unburned areas of a cottonwood riparian forest along the Cimarron...
The effects of snow and salt on ice table stability in University Valley, Antarctica
Kaj E. Williams, Jennifer L. Heldmann, Christopher P. McKay, Michael T. Mellon
2018, Antarctic Science (30) 67-78
The Antarctic Dry Valleys represent a unique environment where it is possible to study dry permafrost overlaying an ice-rich permafrost. In this paper, two opposing mechanisms for ice table stability in University Valley are addressed: i) diffusive recharge via thin seasonal snow deposits and ii) desiccation via salt deposits in...
Meteorological and environmental variables affect flight behaviour and decision-making of an obligate soaring bird, the California Condor Gymnogyps californianus
Sharon A. Poessel, Joseph Brandt, Tricia A. Miller, Todd E. Katzner
2018, Ibis (160) 36-53
The movements of animals are limited by evolutionary constraints and ecological processes and are strongly influenced by the medium through which they travel. For flying animals, variation in atmospheric conditions is critically influential in movement. Obligate soaring birds depend on external sources of updraft more than do other flying species,...
A sequential selective dissolution method to quantify storage and stability of organic carbon associated with Al and Fe hydroxide phases
Katherine Heckman, Corey R. Lawrence, Jennifer W. Harden
2018, Geoderma (312) 24-35
Stabilization of SOM (soil organic matter) is regulated in part by sorption and desorption reactions happening at mineral surfaces, as well as precipitation and dissolution of organo-metal complexes. Fe and Al hydroxides play a particularly significant role in SOM stabilization in soils due to their ubiquitous distribution and their highly reactive surface...
Variation in fish mercury concentrations in streams of the Adirondack region, New York: A simplified screening approach using chemical metrics
Douglas A. Burns, Karen Riva-Murray
2018, Ecological Indicators (84) 648-661
Simple screening approaches for the neurotoxicant methylmercury (MeHg) in aquatic ecosystems may be helpful in risk assessments of natural resources. We explored the development of such an approach in the Adirondack Mountains of New York, USA, a region with high levels of MeHg bioaccumulation. Thirty-six perennial streams broadly representative of...
Estimating carbon and showing impacts of drought using satellite data in regression-tree models
Stephen P. Boyte, Bruce K. Wylie, Danny Howard, Devendra Dahal, Tagir G. Gilmanov
2018, International Journal of Remote Sensing (39) 374-398
Integrating spatially explicit biogeophysical and remotely sensed data into regression-tree models enables the spatial extrapolation of training data over large geographic spaces, allowing a better understanding of broad-scale ecosystem processes. The current study presents annual gross primary production (GPP) and annual ecosystem respiration (RE) for 2000–2013 in several short-statured vegetation...