A cosmopolitan late Ediacaran biotic assemblage: new fossils from Nevada and Namibia support a global biostratigraphic link
E. F. Smith, L. L. Nelson, S. M. Tweedt, H. Zeng, Jeremiah B. Workman
2017, Proceedings of the Royal Society B (284) 1-10
Owing to the lack of temporally well-constrained Ediacaran fossil localities containing overlapping biotic assemblages, it has remained uncertain if the latest Ediacaran (ca 550–541 Ma) assemblages reflect systematic biological turnover or environmental, taphonomic or biogeographic biases. Here, we report new latest Ediacaran fossil discoveries from the lower member of the Wood...
Evaluating population expansion of black bears using spatial capture-recapture
Catherine C. Sun, Angela K. Fuller, Matthew P. Hare, Jeremy E. Hurst
2017, Journal of Wildlife Management (81) 814-823
The population of American black bears (Ursus americanus) in southern New York, USA has been growing and expanding in range since the 1990s. This has motivated a need to anticipate future patterns of range expansion. We conducted a non-invasive, genetic, spatial capture-recapture (SCR) study to estimate black bear density and...
Seven recommendations to make your invasive alien species data more useful
Quentin J. Groom, Tim Adriaens, Peter Desmet, Annie Simpson, Aaike De Wever, Ioannis Bazos, Ana Cristina Cardoso, Lucinda Charles, Anastasia Christopoulou, Anna Gazda, Harry Helmisaari, Donald Hobern, Melanie Josefsson, Frances Lucy, Dragana Marisavljevic, Tomasz Oszako, Jan Pergl, Olivera Petrovic-Obradovic, Celine Prevot, Hans Peter Ravn, Gareth Richards, Alain Roques, Helen Roy, Marie-Anne A. Rozenberg, Riccardo Scalera, Elena Tricarico, Teodora Trichkova, Diemer Vercayie, Argyro Zenetos, Sonia Vanderhoeven
2017, Frontiers in Applied Mathematics and Statistics (3) 1-8
Science-based strategies to tackle biological invasions depend on recent, accurate, well-documented, standardized and openly accessible information on alien species. Currently and historically, biodiversity data are scattered in numerous disconnected data silos that lack interoperability. The situation is no different for alien species data, and this obstructs efficient retrieval, combination, and...
Evaluation of genetic population structure of smallmouth bass in the Susquehanna River basin, Pennsylvania
Megan K. Schall, Meredith L. Bartron, Timothy Wertz, Jonathan M. Niles, Cassidy H. Shaw, Tyler Wagner
2017, North American Journal of Fisheries Management (37) 850-861
The Smallmouth Bass Micropterus dolomieu was introduced into the Susquehanna River basin, Pennsylvania, nearly 150 years ago. Since introduction, it has become an economically and ecologically important species that supports popular recreational fisheries. It is also one of the most abundant top predators in the system. Currently, there is no...
Short-term ecological consequences of collaborative restoration treatments in ponderosa pine forests of Colorado
Jenny S. Briggs, Paula J. Fornwalt, Jonas A. Feinstein
2017, Forest Ecology and Management (395) 69-80
Ecological restoration treatments are being implemented at an increasing rate in ponderosa pine and other dry conifer forests across the western United States, via the USDA Forest Service’s Collaborative Forest Landscape Restoration (CFLR) program. In this program, collaborative stakeholder groups work with National Forests (NFs) to adaptively implement and monitor...
Life history migrations of adult Yellowstone Cutthroat Trout in the upper Yellowstone River
Brian D. Ertel, Thomas E. McMahon, Todd M. Koel, Robert E. Gresswell, Jason Burckhardt
2017, North American Journal of Fisheries Management (37) 743-755
Knowledge of salmonid life history types at the watershed scale is increasingly recognized as a cornerstone for effective management. In this study, we used radiotelemetry to characterize the life history movements of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in the upper Yellowstone River, an extensive tributary that composes nearly half of the...
Nitrogenase activity by biological soil crusts in cold sagebrush steppe ecosystems
Stacy G. Schwabedissen, Kathleen A. Lohse, Sasha C. Reed, Ken A. Aho, Timothy S. Magnuson
2017, Biogeochemistry (134) 57-76
In drylands worldwide, biological soil crusts (BSC) form a thin photosynthetic cover across landscapes, and provide vital benefits in terms of stabilizing soil and fixing nitrogen (N) and carbon (C). Numerous studies have examined the effects of climate and disturbance on BSC functions; however, few have characterized these responses in...
Gradients in Catostomid assemblages along a reservoir cascade
Leandro E. Miranda, Kevin R. Keretz, Chelsea R. Gilliland
2017, River Research and Applications (33) 983-990
Serial impoundment of major rivers leads to alterations of natural flow dynamics and disrupts longitudinal connectivity. Catostomid fishes (suckers, family Catostomidae) are typically found in riverine or backwater habitats yet are able to persist in impounded river systems. To the detriment of conservation, there is limited information about distribution of...
Species’ traits help predict small mammal responses to habitat homogenization by an invasive grass
Joseph P. Ceradini, Anna D. Chalfoun
2017, Ecological Applications (27) 1451-1465
Invasive plants can negatively affect native species, however, the strength, direction, and shape of responses may vary depending on the type of habitat alteration and the natural history of native species. To prioritize conservation of vulnerable species, it is therefore critical to effectively predict species’ responses to invasive plants, which...
Mapping informal small-scale mining features in a data-sparse tropical environment with a small UAS
Peter G. Chirico, Jessica D. Dewitt
2017, Journal of Unmanned Vehicle Systems (5) 69-91
This study evaluates the use of a small unmanned aerial system (UAS) to collect imagery over artisanal mining sites in West Africa. The purpose of this study is to consider how very high-resolution imagery and digital surface models (DSMs) derived from structure-from-motion (SfM) photogrammetric techniques from a small UAS can...
Estimating ages of Utah chubs by use of pectoral fin rays, otoliths, and scales
Kayla M Griffin, Zachary S. Beard, John M. Flinders, Michael C. Quist
2017, Western North American Naturalist (77) 189-194
Utah chub Gila atraria is native to the Upper Snake River system in Wyoming and Idaho and to the Lake Bonneville Basin in Utah and southeastern Idaho. However, the Utah chub has been introduced into many other waterbodies in the western United States, where it competes with ecologically and economically important species....
Decadal declines in avian herbivore reproduction: density-dependent nutrition and phenological mismatch in the Arctic
Megan V. Ross, Ray T. Alisaukas, David C. Douglas, Dana K. Kellett
2017, Ecology (98) 1869-1883
A full understanding of population dynamics depends not only on estimation of mechanistic contributions of recruitment and survival, but also knowledge about the ecological processes that drive each of these vital rates. The process of recruitment in particular may be protracted over several years, and can depend on numerous ecological...
Novel, continuous monitoring of fine‐scale movement using fixed‐position radiotelemetry arrays and random forest location fingerprinting
Andrew B. Harbicht, Theodore R. Castro-Santos, William R. Ardren, Dimitry Gorsky, Dylan Fraser
2017, Methods in Ecology and Evolution (8) 850-859
Radio‐tag signals from fixed‐position antennas are most often used to indicate presence or absence of individuals, or to estimate individual activity levels from signal strength variation within an antenna's detection zone. The potential of such systems to provide more precise information on tag location and movement has not been...
Population characteristics and the influence of discharge on Bluehead Sucker and Flannelmouth Sucker
Zachary B. Klein, Matthew J. Breen, Michael C. Quist
2017, Copeia (105) 375-388
Rivers are among some of the most complex and important ecosystems in the world. Unfortunately, many fishes endemic to rivers have suffered declines in abundance and distribution suggesting that alterations to lotic environments have negatively influenced native fish populations. Of the 35 fishes native to the Colorado River basin (CRB),...
Subsurface geometry of the San Andreas fault in southern California: Results from the Salton Seismic Imaging Project (SSIP) and strong ground motion expectations
Gary S. Fuis, Klaus Bauer, Mark R. Goldman, Trond Ryberg, Victoria E. Langenheim, Daniel S. Scheirer, Michael J. Rymer, Joann M. Stock, John A. Hole, Rufus D. Catchings, Robert Graves, Brad T. Aagaard
2017, Bulletin of the Seismological Society of America (107) 1642-1662
The San Andreas fault (SAF) is one of the most studied strike‐slip faults in the world; yet its subsurface geometry is still uncertain in most locations. The Salton Seismic Imaging Project (SSIP) was undertaken to image the structure surrounding the SAF and also its subsurface geometry. We present SSIP studies...
Physical response of a back-barrier estuary to a post-tropical cyclone
Alexis Beudin, Neil Kamal Ganju, Zafer Defne, Alfredo Aretxabaleta
2017, Journal of Geophysical Research C: Oceans (122) 5888-5904
This paper presents a modeling investigation of the hydrodynamic and sediment transport response of Chincoteague Bay (VA/MD, USA) to Hurricane Sandy using the Coupled Ocean-Atmosphere-Wave-Sediment-Transport (COAWST) modeling system. Several simulation scenarios with different combinations of remote and local forces were conducted to identify the dominant physical processes. While 80% of...
Numerical simulations of sand production in interbedded hydrate-bearing sediments during depressurization
Shun Uchida, Jeen-Shang Lin, Evgeniy Myshakin, Yongkoo Seol, Timothy S. Collett, Ray Boswell
2017, Conference Paper, Proceeding of the 9th International Conference on Gas Hydrates
Geomechanical behavior of hydrate-bearing sediments during gas production is complex, involving changes in hydrate-dependent mechanical properties. When interbedded clay layers are present, the complexity is more pronounced because hydrate dissociation tends to occur preferentially in the sediments adjacent to the clay layers due to clay layers acting as a heat...
Integration of vegetation community spatial data into a prescribed fire planning process at Shenandoah National Park, Virginia (USA)
John A. Young, Carolyn G. Mahan, Melissa Forder
2017, Natural Areas Journal (37) 394-405
Many eastern forest communities depend on fire for regeneration or are enhanced by fire as a restoration practice. However, the use of prescribed fire in the mesic forested environments and the densely populated regions of the eastern United States has been limited. The objective of our research was to develop...
Challenges to oil spill assessment for seabirds in the deep ocean
J. Christopher Haney, Patrick G.R. Jodice, William Montevecchi, David C. Evers
2017, Archives of Environmental Contamination and Toxicology (73) 33-39
We synthesize impediments for evaluating effects to seabirds from open ocean hydrocarbon releases. Effects on seabirds from ship discharges, spills, and well blowouts often are poorly detected and monitored far from land. Regulatory regimes for ocean spills can result in monitoring efforts that are not entirely transparent. We illustrate how...
A proposal for amending administrative law to facilitate adaptive management
Robin K. Craig, J.B. Ruhl, Ellie Brown, Byron K. Williams
2017, Environmental Research Letters (12) 1-17
In this article we examine how federal agencies use adaptive management. In order for federal agencies to implement adaptive management more successfully, administrative law must adapt to adaptive management, and we propose changes in administrative law that will help to steer the current process out of a dead end. Adaptive...
Puffins reveal contrasting relationships between forage fish and ocean climate in the North Pacific
William J. Sydeman, John F. Piatt, Sarah Ann Thompson, Marisol Garcia-Reyes, Scott A. Hatch, Mayumi L. Arimitsu, Leslie Slater, Jeffrey C. Williams, Nora A. Rojek, Stephani G. Zador, Heather M. Renner
2017, Fisheries Oceanography (26) 379-395
Long-term studies of predator food habits (i.e., ‘predator-based sampling’) are useful for identifying patterns of spatial and temporal variability of forage nekton in marine ecosystems. We investigated temporal changes in forage fish availability and relationships to ocean climate by analyzing diet composition of three puffin species (horned puffin Fratercula corniculata, tufted...
Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins
Koenraad Van Doorslaer, Valeria Ruoppolo, Annie Schmidt, Amelie Lescroel, Dennis Jongsomjit, Megan Elrod, Simona Kraberger, Daisy Stainton, Katie M. Dugger, Grant Ballard, David G. Ainley, Arvind Varsani
2017, Virus Evolution (3)
The family Papillomaviridae contains more than 320 papillomavirus types, with most having been identified as infecting skin and mucosal epithelium in mammalian hosts. To date, only nine non-mammalian papillomaviruses have been described from birds (n = 5), a fish (n = 1), a snake (n = 1), and turtles (n = 2). The identification of papillomaviruses in sauropsids and a...
How can climate change and engineered water conveyance affect sediment dynamics in the San Francisco Bay-Delta system?
Fernanda Achete, Mick Van der Wegen, Jan Adriaan Roelvink, Bruce E. Jaffe
2017, Climatic Change (142) 375-389
Suspended sediment concentration is an important estuarine health indicator. Estuarine ecosystems rely on the maintenance of habitat conditions, which are changing due to direct human impact and climate change. This study aims to evaluate the impact of climate change relative to engineering measures on estuarine fine sediment dynamics and sediment...
Land before water: The relative temporal sequence of human alteration of freshwater ecosystems in the conterminous United States
Ellen Wohl, Katherine B. Lininger, Jill Baron
2017, Anthropocene (18) 27-46
Human alteration of ecosystems prior to Euro-American contact in the area that became the conterminous United States disproportionately affected terrestrial systems compared to freshwater ecosystems, primarily through the use of fire and agriculture in some regions of the United States. After circa 1600 AD, trapping of beaver, along with intensive modification of rivers and...
Estimating incision healing rate for surgically implanted acoustic transmitters from recaptured fish
Abby Schoonyan, Richard T. Kraus, Matthew D. Faust, Christopher Vandergoot, Steven J. Cooke, H. Andrew Cook, Todd A. Hayden, Charles C. Krueger
2017, Animal Biotelemetry (5)
Background Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye (Sander vitreus) are a valuable, highly exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture...
