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Publication Extents

Not all publications have extents, not all extents are completely accurate
Influence of anglers' specializations on catch, harvest, and bycatch of targeted taxa
Kevin L. Pope, Christopher J. Chizinski, Christopher L. Wiley, Dustin R. Martin
2016, Fisheries Research (183) 128-137
Fishery managers often use catch per unit effort (CPUE) of a given taxon derived from a group of anglers, those that sought said taxon, to evaluate fishery objectives because managers assume CPUE for this group of anglers is most sensitive to changes in fish taxon density. Further, likelihood of harvest...
Hanson Russian River Ponds floodplain restoration: Feasibility study and conceptual design; Appendix G: Physical evaluation of the restoration alternatives
Richard R. McDonald, Jonathan M. Nelson
2016, Book chapter, Hanson Russian River Ponds floodplain restoration: Feasibility study and conceptual design
Appendix G: Hanson Russian River Ponds Floodplain Restoration: Feasibility Study and Conceptual Design |G-1Appendix GPhysical Evaluation of the Restoration AlternativesRichard McDonald and Jonathan Nelson, PhDU.S. Geological Survey Geomorphology and Sediment Transport Laboratory, Golden, ColoradoIntroductionTo assess the relative and overall impacts of the scenarios proposed in Chapters 7 and 9,(Stage I-A–I-D...
Seismic imaging of the metamorphism of young sediment into new crystalline crust in the actively rifting Imperial Valley, California
Liang Han, John Hole, Joann Stock, Gary S. Fuis, Colin F. Williams, Jonathan Delph, Kathy Davenport, Amanda Livers
2016, Geochemistry, Geophysics, Geosystems (17) 4566-4584
Plate-boundary rifting between transform faults is opening the Imperial Valley of southern California and the rift is rapidly filling with sediment from the Colorado River. Three 65–90 km long seismic refraction profiles across and along the valley, acquired as part of the 2011 Salton Seismic Imaging Project, were analyzed to...
Metabarcoding of fecal samples to determine herbivore diets: A case study of the endangered Pacific pocket mouse
Deborah D. Iwanowicz, Amy G. Vandergast, Robert S. Cornman, Cynthia R. Adams, Joshua R. Kohn, Robert N. Fisher, Cheryl S. Brehme
2016, PLoS ONE (11) 1-23
Understanding the diet of an endangered species illuminates the animal’s ecology, habitat requirements, and conservation needs. However, direct observation of diet can be difficult, particularly for small, nocturnal animals such as the Pacific pocket mouse (Heteromyidae: Perognathus longimembris pacificus). Very little is known of the dietary habits of this federally endangered...
When winners become losers: Predicted nonlinear responses of arctic birds to increasing woody vegetation
Sarah J. Thompson, Colleen M. Handel, Rachel M. Richardson, Lance B. McNew
2016, PLoS ONE (11) 1-17
Climate change is facilitating rapid changes in the composition and distribution of vegetation at northern latitudes, raising questions about the responses of wildlife that rely on arctic ecosystems. One widely observed change occurring in arctic tundra ecosystems is an increasing dominance of deciduous shrub vegetation. Our goals were to examine...
Bacterial genomics reveal the complex epidemiology of an emerging pathogen in arctic and boreal ungulates
Taya L. Forde, Karin Orsel, Ruth N. Zadoks, Roman Biek, Layne G. Adams, Sylvia L. Checkley, Tracy Davison, Jeroen De Buck, Mathieu Dumond, Brett T. Elkin, Laura Finnegan, Bryan J. Macbeth, Cait Nelson, Amanda Niptanatiak, Shane Sather, Helen M. Schwantje, Frank van der Meer, Susan J. Kutz
2016, Frontiers in Microbiology (7) 1-14
Northern ecosystems are currently experiencing unprecedented ecological change, largely driven by a rapidly changing climate. Pathogen range expansion, and emergence and altered patterns of infectious disease, are increasingly reported in wildlife at high latitudes. Understanding the causes and consequences of shifting pathogen diversity and host-pathogen interactions in these ecosystems is...
Rapid fluvial incision of a late Holocene lava flow: Insights from LiDAR, alluvial stratigraphy, and numerical modeling
Kristin Sweeney, Joshua J. Roering
2016, GSA Bulletin (129) 500-512
Volcanic eruptions fundamentally alter landscapes, paving over channels, decimating biota, and emplacing fresh, unweathered material. The fluvial incision of blocky lava flows is a geomorphic puzzle. First, high surface permeability and lack of sediment should preclude geomorphically effective surface runoff and dissection. Furthermore, past work has demonstrated the importance of...
Chronic wasting disease in white-tailed deer: Infection, mortality, and implications for heterogeneous transmission
Michael D. Samuel, Daniel J. Storm
2016, Ecology (97) 3195-3205
Chronic wasting disease (CWD) is a fatal neurodegenerative disease affecting free-ranging and captive cervids that now occurs in 24 U.S. states and two Canadian provinces. Despite the potential threat of CWD to deer populations, little is known about the rates of infection and mortality caused by this disease. We used...
The use of amino acid indices for assessing organic matter quality and microbial abundance in deep-sea Antarctic sediments of IODP Expedition 318
Stephanie A Carr, Christopher T. Mills, Kevin W Mandernack
2016, Marine Chemistry (186) 72-82
The Adélie Basin, located offshore of the Wilkes Land margin, experiences unusually high sedimentation rates (~ 2 cm yr− 1) for the Antarctic coast. This study sought to compare depthwise changes in organic matter (OM) quantity and quality with changes in microbial biomass with depth at this high-deposition site and an offshore continental margin...
Positive biodiversity-productivity relationship predominant in global forests
Jingjing Liang, Thomas W. Crowther, Nicolas Picard, Susan Wiser, Mo Zhou, Giorgio Alberti, Ernst-Detlef Schulze, Anthony D. McGuire, et al.
2016, Science (354)
The relationship between biodiversity and ecosystem productivity has been explored in detail in herbaceous vegetation, but patterns in forests are far less well understood. Liang et al. have amassed a global forest data set from >770,000 sample plots in 44 countries. A positive and consistent relationship can be discerned between...
Using thermal limits to assess establishment of fish dispersing to high-latitude and high-elevation watersheds
Karen M. Dunmall, Neil J. Mochnacz, Christian E. Zimmerman, Charles Lean, James D. Reist
2016, Canadian Journal of Fisheries and Aquatic Sciences (73) 1750-1758
Distributional shifts of biota to higher latitudes and elevations are presumably influenced by species-specific physiological tolerances related to warming temperatures. However, it is establishment rather than dispersal that may be limiting colonizations in these cold frontier areas. In freshwater ecosystems, perennial groundwater springs provide critical winter thermal refugia in these...
Western Lake Erie Basin: Soft-data-constrained, NHDPlus resolution watershed modeling and exploration of applicable conservation scenarios
Haw Yen, Michael J. White, Jeffrey G. Arnold, S. Conor Keitzer, Mari-Vaughn V. Johnson, Jay D. Atwood, Prasad Daggupati, Matthew E. Herbert, Scott P. Sowa, Stuart A. Ludsin, Dale M. Robertson, Raghavan Srinivasan, Charles A. Rewa
2016, Science of the Total Environment (569-570) 1265-1281
Complex watershed simulation models are powerful tools that can help scientists and policy-makers address challenging topics, such as land use management and water security. In the Western Lake Erie Basin (WLEB), complex hydrological models have been applied at various scales to help describe relationships between land use and water, nutrient,...
Shrinking windows of opportunity for oak seedling establishment in southern California mountains
Frank W. Davis, Lynn C. Sweet, Josep M. Serra-Diaz, Janet Franklin, Ian M. McCullough, Alan L. Flint, Lorraine E. Flint, John Dingman, Helen M. Regan, Alexandra D. Syphard, Lee Hannah, Kelly Redmond, Max A. Moritz
2016, Ecosphere (7) 1-18
Seedling establishment is a critical step that may ultimately govern tree species’ distribution shifts under environmental change. Annual variation in the location of seed rain and microclimates results in transient “windows of opportunity” for tree seedling establishment across the landscape. These establishment windows vary at fine spatiotemporal scales that are...
Biodynamics of copper oxide nanoparticles and copper ions in an oligochaete - Part II: Subcellular distribution following sediment exposure
Amalie Thit, Tina Ramskov, Marie Noele Croteau, Henriette Selck
2016, Aquatic Toxicology (180) 25-35
The use and likely incidental release of metal nanoparticles (NPs) is steadily increasing. Despite the increasing amount of published literature on metal NP toxicity in the aquatic environment, very little is known about the biological fate of NPs after sediment exposures. Here, we compare the bioavailability and subcellular distribution of...
Response of imperiled Okaloosa darters to stream restoration
David B. Reeves, William B. Tate, Howard L. Jelks, Frank Jordan
2016, North American Journal of Fisheries Management (36) 1375-1385
The Okaloosa Darter Etheostoma okaloosae is a small percid endemic to six stream drainages in northwestern Florida. The U.S. Fish and Wildlife Service listed Okaloosa Darters as endangered in 1973 and downlisted them to threatened in 2011 because of habitat improvements and increasing abundance across much of their geographic range....
Three whole-wood isotopic reference materials, USGS54, USGS55, and USGS56, for δ2H, δ13C, δ15N, and δ18O measurements
Haiping Qi, Tyler B. Coplen, James A. Jordan
2016, Chemical Geology (442) 47-53
Comparative measurements of stable hydrogen and oxygen isotopes in wood are hampered by the lack of proper reference materials (RMs). The U.S. Geological Survey (USGS) has prepared three powdered, whole-wood RMs, USGS54 (Pinus contorta, Canadian lodgepole pine), USGS55 (Cordia cf. dodecandra, Mexican ziricote), and USGS56 (Berchemia cf. zeyheri, South...
Annual elk calf survival in a multiple carnivore system
Daniel R. Eacker, Mark Hebblewhite, Kelly M. Proffitt, Benjamin S. Jimenez, Michael S. Mitchell, Hugh S. Robinson
2016, Journal of Wildlife Management (80) 1345-1359
The realized effect of multiple carnivores on juvenile ungulate recruitment may depend on the carnivore assemblage as well as compensation from forage and winter weather severity, which may mediate juvenile vulnerability to predation in ungulates. We used a time-to-event approach to test for the effects of risk factors on annual...
Age, distribution and style of deformation in Alaska north of 60°N: Implications for assembly of Alaska
Thomas E. Moore, Stephen E. Box
2016, Tectonophysics (691) 133-170
The structural architecture of Alaska is the product of a complex history of deformation along both the Cordilleran and Arctic margins of North America involving oceanic plates, subduction zones and strike-slip faults and with continental elements of Laurentia, Baltica, and Siberia. We use geological constraints to assign regions of deformation...
Calibrated acoustic emission system records M -3.5 to M -8 events generated on a saw-cut granite sample
Gregory C. McLaskey, David A. Lockner
2016, Rock Mechanics and Rock Engineering (49) 4527-4536
Acoustic emission (AE) analyses have been used for decades for rock mechanics testing, but because AE systems are not typically calibrated, the absolute sizes of dynamic microcrack growth and other physical processes responsible for the generation of AEs are poorly constrained. We describe a calibration technique for the AE recording...
Regional meteorological drivers and long term trends of winter-spring nitrate dynamics across watersheds in northeastern North America
Jill Crossman, M Catherine Eimers, Nora J. Casson, Douglas A. Burns, John L. Campbell, Gene E Likens, Myron J Mitchell, Sarah J. Nelson, James B. Shanley, Shaun A. Watmough, Kara L Webster
2016, Biogeochemistry (130) 247-265
This study evaluated the contribution of winter rain-on-snow (ROS) events to annual and seasonal nitrate (N-NO3) export and identified the regional meteorological drivers of inter-annual variability in ROS N-NO3 export (ROS-N) at 9 headwater streams located across Ontario, Canada and the northeastern United States. Although on average only 3.3 %...
Review of footnotes and annotations to the 1949–2013 tables of standard atomic weights and tables of isotopic compositions of the elements (IUPAC Technical Report)
Tyler B. Coplen, Norman E. Holden
2016, Pure and Applied Chemistry (88) 689-699
The Commission on Isotopic Abundances and Atomic Weights uses annotations given in footnotes that are an integral part of the Tables of Standard Atomic Weights to alert users to the possibilities of quite extraordinary occurrences, as well as sources with abnormal atomic-weight values outside an otherwise acceptable range. The basic...
A comparative examination of cortisol effects on muscle myostatin and HSP90 gene expression in salmonids
Nicholas J. Galt, Stephen D. McCormick, Jacob Michael Froehlich, Peggy R. Biga
2016, General and Comparative Endocrinology (237) 19-26
Cortisol, the primary corticosteroid in teleost fishes, is released in response to stressors to elicit local functions, however little is understood regarding muscle-specific responses to cortisol in these fishes. In mammals, glucocorticoids strongly regulate the muscle growth inhibitor, myostatin, via glucocorticoid response elements (GREs) leading to muscle atrophy. Bioinformatics methods suggest that this...
Pb-Sr isotopic and geochemical constraints on sources and processes of lead contamination in well waters and soil from former fruit orchards, Pennsylvania, USA: A legacy of anthropogenic activities
Robert A. Ayuso, Nora K. Foley
2016, Journal of Geochemical Exploration (170) 125-147
Isotopic discrimination can be an effective tool in establishing a direct link between sources of Pb contamination and the presence of anomalously high concentrations of Pb in waters, soils, and organisms. Residential wells supplying water containing up to 1600 ppb Pb to houses built on the former Mohr orchards commercial site,...
Climate-change signals in national atmospheric deposition program precipitation data
Gregory A. Wetherbee, M. Alisa Mast
2016, Climate Dynamics (47) 3141-3155
National Atmospheric Deposition Program (NADP)/National Trends Network precipitation type, snow-season duration, and annual timing of selected chemical wet-deposition maxima vary with latitude and longitude within a 35-year (1979–2013) data record for the contiguous United States and Alaska. From the NADP data collected within the region bounded by 35.6645°–48.782° north latitude...
Scale-dependent seasonal pool habitat use by sympatric Wild Brook Trout and Brown Trout populations
Lori A. Davis, Tyler Wagner
2016, Transactions of the American Fisheries Society (145) 888-902
Sympatric populations of native Brook Trout Salvelinus fontinalis and naturalized Brown Trout Salmo truttaexist throughout the eastern USA. An understanding of habitat use by sympatric populations is of importance for fisheries management agencies because of the close association between habitat and population dynamics. Moreover, habitat use by stream-dwelling salmonids may...