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Not all publications have extents, not all extents are completely accurate
Porphyry copper assessment of the Tethys region of western and southern Asia: Chapter V in Global mineral resource assessment
Lukas Zürcher, Arthur A. Bookstrom, Jane M. Hammarstrom, John C. Mars, Stephen Ludington, Michael L. Zientek, Pamela Dunlap, John C. Wallis, Lawrence J. Drew, David M. Sutphin, Byron R. Berger, Richard J. Herrington, Mario Billa, Ilkay Kuscu, Charles J. Moon, Jeremy P. Richards
Michael L. Zientek, Jane M. Hammarstrom, Kathleen M. Johnson, editor(s)
2015, Scientific Investigations Report 2010-5090-V
A probabilistic mineral resource assessment of undiscovered resources in porphyry copper deposits in the Tethys region of western and southern Asia was carried out as part of a global mineral resource assessment led by the U.S. Geological Survey (USGS). The purpose of the study was to delineate geographic areas as...
Fat, weather, and date affect migratory songbirds’ departure decisions, routes, and time it takes to cross the Gulf of Mexico
Jill L. Deppe, Michael P. Ward, Rachel T. Bolus, Robert H. Diehl, A. Celis-Murillo, Theodore J. Zenzal, Frank R. Moore, Thomas J. Benson, Jaclyn A. Smolinsky, Lynn N. Schofield, David A. Enstrom, Eben H. Paxton, Gil Bohrer, Tara A. Beveroth, Arlo Raim, Renee L. Obringer, David Delaney, William W. Cochran
2015, Proceedings of the National Academy of Sciences (112) E6331-E6338
Approximately two thirds of migratory songbirds in eastern North America negotiate the Gulf of Mexico (GOM), where inclement weather coupled with no refueling or resting opportunities can be lethal. However, decisions made when navigating such features and their consequences remain largely unknown due to technological limitations of tracking small animals...
Simulating range-wide population and breeding habitat dynamics for an endangered woodland warbler in the face of uncertainty
Adam Duarte, Jeffrey Hatfield, Todd M. Swannack, Michael R. J. Forstner, M. Clay Green, Floyd W. Weckerly
2015, Ecological Modelling (320) 52-61
Population viability analyses provide a quantitative approach that seeks to predict the possible future status of a species of interest under different scenarios and, therefore, can be important components of large-scale species’ conservation programs. We created a model and simulated range-wide population and breeding habitat dynamics for an endangered woodland...
Genetic variation underlying resistance to infectious hematopoietic necrosis virus in a steelhead trout (Oncorhynchus mykiss) population
Marine S. O. Brieuc, Maureen K. Purcell, Alexander D. Palmer, Kerry A. Naish
2015, Diseases of Aquatic Organisms (117) 77-83
Understanding the mechanisms of host resistance to pathogens will allow insights into the response of wild populations to the emergence of new pathogens. Infectious hematopoietic necrosis virus (IHNV) is endemic to the Pacific Northwest and infectious to Pacific salmon and trout (Oncorhynchus spp.). Emergence of the M genogroup of IHNV in...
Web based visualization of large climate data sets
Jay R. Alder, Steven W. Hostetler
2015, Environmental Modelling and Software (68) 175-180
We have implemented the USGS National Climate Change Viewer (NCCV), which is an easy-to-use web application that displays future projections from global climate models over the United States at the state, county and watershed scales. We incorporate the NASA NEX-DCP30 statistically downscaled temperature and precipitation for 30 global climate models...
Ecotoxicoparasitology: Understanding mercury concentrations in gut contents, intestinal helminths and host tissues of Alaskan gray wolves (Canis lupus)
Ashley K. McGrew, Todd M. O'Hara, Craig A. Stricker, Margaret Castellini, Kimberlee B. Beckmen, Mo D. Salman, Lora R. Ballweber
2015, Science of the Total Environment (536) 866-871
Some gastrointestinal helminths acquire nutrients from the lumen contents in which they live; thus, they may be exposed to non-essential elements, such as mercury (Hg), during feeding. The objectives of this study were: 1) determine the total mercury concentrations ([THg]) in Gray wolves (Canis lupus) and their parasites, and 2)...
Dynamic response of desert wetlands to abrupt climate change
Kathleen B. Springer, Craig R. Manker, Jeffrey S. Pigati
2015, PNAS (112) 14522-14526
Desert wetlands are keystone ecosystems in arid environments and are preserved in the geologic record as groundwater discharge (GWD) deposits. GWD deposits are inherently discontinuous and stratigraphically complex, which has limited our understanding of how desert wetlands responded to past episodes of rapid climate change. Previous studies have shown that...
Anaerobic chemolithotrophic growth of the haloalkaliphilic bacterium strain MLMS‑1 by disproportionation of monothioarsenate
B. Planer-Friedrich, C. Hartig, R. Lohmayer, E. Suess, Shelley McCann, Ronald S. Oremland
2015, Environmental Science & Technology (49) 6554-6563
A novel chemolithotrophic metabolism based on a mixed arsenic−sulfur species has been discovered for the anaerobic deltaproteobacterium, strain MLMS-1, a haloalkaliphile isolated from Mono Lake, California, U.S. Strain MLMS‑1 is the first reported obligate arsenate-respiring chemoautotroph which grows by coupling arsenate reduction to arsenite with the oxidation of sulfide to...
Storage in California’s reservoirs and snowpack in this time of drought
Michael D. Dettinger, Michael L. Anderson
2015, San Francisco Estuary and Watershed Science (13)
The San Francisco Bay and Sacramento–San Joaquin Delta (Delta) are the recipients of inflows from a watershed that spans much of California and that has ties to nearly the entire state. Historically, California has buffered its water supplies and flood risks both within—and beyond—the Delta’s catchment by developing many reservoirs, large and small, high and low. Most...
Karst mapping in the United States: Past, present and future
David J. Weary, Daniel H. Doctor
2015, GSA Special Papers (516) 177-211
The earliest known comprehensive karst map of the entire USA was published by Stringfield and LeGrand (1969), based on compilations of William E. Davies of the U.S. Geological Survey (USGS). Various versions of essentially the same map have been published since. The USGS recently published new digital maps and databases...
Determinants of public support for threatened and endangered species management: A case study of Cape Lookout National Seashore
Lena Le, Kenneth J. Bagstad, Philip S. Cook, Kirsten M. Leong, Eva DiDonato
2015, Journal of Park and Recreation Administration (33) 16-31
Gaining public support for management actions is important to the success of public land management agencies' efforts to protect threatened and endangered species. This is especially relevant at national parks, where managers balance two aspects of their conservation mission: to protect resources and to provide for public enjoyment. This study...
Experimental infection of snakes with Ophidiomyces ophiodiicola causes pathological changes that typify snake fungal disease
Jeffrey M. Lorch, Julia S. Lankton, Katrien Werner, Elizabeth A. Falendysz, Kevin McCurley, David S. Blehert
2015, mBio (6)
Snake fungal disease (SFD) is an emerging skin infection of wild snakes in eastern North America. The fungus Ophidiomyces ophiodiicola is frequently associated with the skin lesions that are characteristic of SFD, but a causal relationship between the fungus and the disease has not been established. We experimentally infected captive-bred corn...
California State Waters map series — Offshore of Scott Creek, California
Guy R. Cochrane, Peter Dartnell, Samuel Y. Johnson, H. Gary Greene, Mercedes D. Erdey, Bryan E. Dieter, Nadine E. Golden, Charles A. Endris, Stephen R. Hartwell, Rikk G. Kvitek, Clifton W. Davenport, Janet Watt, Lisa M. Krigsman, Andrew C. Ritchie, Ray W. Sliter, David P. Finlayson, Katherine L. Maier
Guy R. Cochrane, Susan A. Cochran, editor(s)
2015, Open-File Report 2015-1191
Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration,...
Application of a microfluidic quantitative polymerase chain reaction technique to monitor bacterial pathogens in beach water and complex environmental matrices
Muruleedhara Byappanahalli, Meredith Nevers, Richard L. Whitman, Satoshi Ishii
2015, Environmental Science and Technology Letters (2) 347-351
Microfluidic quantitative polymerase chain reaction (MFQPCR) and conventional quantitative polymerase chain reaction methods were compared side by side in detecting and quantifying 19 genetic markers associated with Escherichia coli and select bacterial pathogens in algae, beach sand, and water from Lake Michigan. Enteropathogenic E. coli (EPEC), Shiga toxin-producing E. coli, Salmonella spp., Campylobacter jejuni, and Clostridium perfringens were among the...
Marshes to mudflats—Effects of sea-level rise on tidal marshes along a latitudinal gradient in the Pacific Northwest
Karen M. Thorne, Bruce D. Dugger, Kevin J. Buffington, Chase M. Freeman, Christopher N. Janousek, Katherine W. Powelson, Glenn R. Gutenspergen, John Y. Takekawa
2015, Open-File Report 2015-1204
Summary In the Pacific Northwest, coastal wetlands support a wealth of ecosystem services including habitat provision for wildlife and fisheries and flood protection. The tidal marshes, mudflats, and shallow bays of coastal estuaries link marine, freshwater, and terrestrial habitats, and provide economic and recreational benefits to local communities. Climate change effects...
Case Study, California Black Rail (Laterallus jamaicensis corturniculus): Science Foundation Chapter 5, Appendix 5.1 in The Baylands and climate change: What can we do?
Jules G. Evens, Karen M. Thorne
2015, Report, The Baylands and climate change: What can we do? Baylands Ecosystem Habitat Goals science update 2015
The Black Rail is the smallest member of the avian family Rallidae and has a wide-ranging but highly scattered distribution throughout the New World. Of five subspecies, two occur in North America—the Eastern Black Rail (L.j. jamaicensis) and the California Black Rail (L.j. coturniculus). Throughout its range, the Black Rail...
Behavior, passage, and downstream migration of juvenile Chinook salmon from Detroit Reservoir to Portland, Oregon, 2014–15
Tobias J. Kock, John W. Beeman, Amy C. Hansen, Hal C. Hansel, Gabriel S. Hansen, Tyson W. Hatton, Eric E. Kofoot, Matthew D. Sholtis, Jamie M. Sprando
2015, Open-File Report 2015-1220
An evaluation was conducted to estimate dam passage survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) at Detroit Dam during a period of spill. To estimate dam passage survival, we used a paired-release recapture study design and released groups of tagged fish upstream (997 fish) and downstream (625 fish) of Detroit...
Hydrothermal response to a volcano-tectonic earthquake swarm, Lassen, California
Steven E. Ingebritsen, David R. Shelly, Paul A. Hsieh, Laura Clor, P.H. Seward, William C. Evans
2015, Geophysical Research Letters (42) 9223-9230
The increasing capability of seismic, geodetic, and hydrothermal observation networks allows recognition of volcanic unrest that could previously have gone undetected, creating an imperative to diagnose and interpret unrest episodes. A November 2014 earthquake swarm near Lassen Volcanic National Park, California, which included the largest earthquake in the area in...
Rates and patterns of surface deformation from laser scanning following the South Napa earthquake, California
Stephen B. DeLong, James J. Lienkaemper, Alexandra J. Pickering, Nikita N. Avdievitch
2015, Geosphere (11) 2015-2030
The A.D. 2014 M6.0 South Napa earthquake, despite its moderate magnitude, caused significant damage to the Napa Valley in northern California (USA). Surface rupture occurred along several mapped and unmapped faults. Field observations following the earthquake indicated that the magnitude of postseismic surface slip was likely to approach or exceed...
Strategic Grassland Bird Conservation throughout the annual cycle: Linking policy alternatives, landowner decisions, and biological population outcomes
Ryan G. Drum, Christine Ribic, Katie Koch, Eric V. Lonsdorf, Edward C. Grant, Marissa Ahlering, Laurel M. Barnhill, Thomas Dailey, Socheata Lor, Connie Mueller, D.C. Pavlacky Jr., Catherine Rideout, David W. Sample
2015, PLoS ONE (10)
Grassland bird habitat has declined substantially in the United States. Remaining grasslands are increasingly fragmented, mostly privately owned, and vary greatly in terms of habitat quality and protection status. A coordinated strategic response for grassland bird conservation is difficult, largely due to the scope and complexity of the problem, further...
Time-lapse electrical geophysical monitoring of amendment-based biostimulation
Timothy C. Johnson, Roelof J. Versteeg, Frederick D. Day-Lewis, William Major, John W. Lane Jr.
2015, Ground Water (53) 920-932
Biostimulation is increasingly used to accelerate microbial remediation of recalcitrant groundwater contaminants. Effective application of biostimulation requires successful emplacement of amendment in the contaminant target zone. Verification of remediation performance requires postemplacement assessment and contaminant monitoring. Sampling-based approaches are expensive and provide low-density spatial and temporal information. Time-lapse electrical resistivity...
Comment on "Donders, T.H. 2014. Middle Holocene humidity increase in Florida: climate or sea-level? Quaternary Science Reviews 103:170-174."
Paul H. Glaser, Barbara CS Hansen, Joseph J. Donovan, Thomas J. Givnish, Craig A. Stricker, John C. Volin
2015, Quaternary Science Reviews (128) 138-141
Donders (2014) has recently proposed that the climate of Florida became progressively wetter over the past 5000 years in response to a marked strengthening of the El Niño regime. This reconstruction is largely based on a re-analysis of pollen records from regions north of Lake Okeechobee (<span...
Abundance, stable isotopic composition, and export fluxes of DOC, POC, and DIC from the Lower Mississippi River during 2006–2008
Yihua Cai, Laodong Guo, Xuri Wang, George R. Aiken
2015, Journal of Geophysical Research: Biogeosciences (120) 2273-2288
Sources, abundance, isotopic compositions, and export fluxes of dissolved inorganic carbon (DIC), dissolved and colloidal organic carbon (DOC and COC), and particulate organic carbon (POC), and their response to hydrologic regimes were examined through monthly sampling from the Lower Mississippi River during 2006–2008. DIC was the most abundant carbon species,...
The relationship between the ratio of strontium to calcium and sea-surface temperature in a modern Porites astreoides coral: Implications for using P. astreoides as a paleoclimate archive
Tess E. Busch, Jennifer A. Flannery, Julie N. Richey, Anastasios Stathakopoulos
2015, Open-File Report 2015-1182
An inverse relationship has been demonstrated between water temperature and the ratio of strontium to calcium (Sr/Ca) in coral aragonite for a number of Pacific species of the genus Porites. This empirically determined relationship has been used to reconstruct past sea-surface temperature (SST) from modern and Holocene age coral archives....
Probing the carbonyl functionality of a petroleum resin and asphaltene through oximation and schiff base formation in conjunction with N-15 NMR
Kevin A. Thorn, Larry G. Cox
2015, PLoS ONE (10)
Despite recent advances in spectroscopic techniques, there is uncertainty regarding the nature of the carbonyl groups in the asphaltene and resin fractions of crude oil, information necessary for an understanding of the physical properties and environmental fate of these materials. Carbonyl and hydroxyl group functionalities are not observed in natural...