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Guidelines for collecting and maintaining archives for genetic monitoring
Jennifer A. Jackson, Linda Laikre, C. Scott Baker, Katherine C. Kendall, The Genetic Monitoring Working Group
2012, Conservation Genetics Resources (4) 527-536
Rapid advances in molecular genetic techniques and the statistical analysis of genetic data have revolutionized the way that populations of animals, plants and microorganisms can be monitored. Genetic monitoring is the practice of using molecular genetic markers to track changes in the abundance, diversity or distribution of populations, species or...
Geologic map of the Themis Regio quadrangle (V-53), Venus
Ellen R. Stofan, Antony W. Brian
2012, Scientific Investigations Map 3165
The Themis Regio quadrangle (V-53), Venus, has been geologically mapped at 1:5,000,000 scale as part of the NASA Planetary Geologic Mapping Program. The quadrangle extends from lat 25° to 50° S. and from long 270° to 300° E. and encompasses the Themis Regio highland, the surrounding plains, and the southernmost...
A Markov chain analysis of the movements of juvenile salmonids, including sockeye salmon, in the forebay of McNary Dam, Washington and Oregon, 2006-09
Noah S. Adams, Tyson W. Hatton
2012, Open-File Report 2012-1120
Passage and survival data were collected at McNary Dam between 2006 and 2009. These data have provided critical information for resource managers to implement structural and operational changes designed to improve the survival of juvenile salmonids as they migrate past the dam. Much of the valuable information collected at McNary...
A Markov chain analysis of the movements of juvenile salmonids in the forebay of McNary Dam, Washington and Oregon, 2006-09
Noah S. Adams, Tyson W. Hatton
2012, Open-File Report 2012-1119
Passage and survival data for yearling and subyearling Chinook salmon and juvenile steelhead were collected at McNary Dam between 2006 and 2009. These data have provided critical information for resource managers to implement structural and operational changes designed to improve the survival of juvenile salmonids as they migrate past the...
Extending a prototype knowledge- and object-based image analysis model to coarser spatial resolution imagery: an example from the Missouri River
Laurence L. Strong
2012, Conference Paper, Proceedings GEOBIA 2012
A prototype knowledge- and object-based image analysis model was developed to inventory and map least tern and piping plover habitat on the Missouri River, USA. The model has been used to inventory the state of sandbars annually for 4 segments of the Missouri River since 2006 using QuickBird imagery. Interpretation...
Estimations of evapotranspiration and water balance with uncertainty over the Yukon River Basin
Wenping Yuan, Shuguang Liu, Shunlin Liang, Zhengxi Tan, Heping Liu, Claudia Young
2012, Water Resources Management (26) 2147-2157
In this study, the revised Remote Sensing-Penman Monteith model (RS-PM) was used to scale up evapotranspiration (ET) over the entire Yukon River Basin (YRB) from three eddy covariance (EC) towers covering major vegetation types. We determined model parameters and uncertainty using a Bayesian-based method in the three EC sites. The...
Reconstruction of past methane availability in an Arctic Alaska wetland indicates climate influenced methane release during the past ~12,000 years
Matthew J. Wooller, John W. Pohlman, Benjamin V. Gaglioti, Peter Langdon, Miriam Jones, Katey M. Walter Anthony, Kevin W. Becker, Kai-Uwe Hinrichs, Marcus Elvert
2012, Journal of Paleolimnology (48) 27-42
Atmospheric contributions of methane from Arctic wetlands during the Holocene are dynamic and linked to climate oscillations. However, long-term records linking climate variability to methane availability in Arctic wetlands are lacking. We present a multi-proxy ~12,000 year paleoecological reconstruction of intermittent methane availability from a radiocarbon-dated sediment core (LQ-West) taken...
Modeling radium distribution in coastal aquifers during sea level changes: The Dead Sea case
Yael Kiro, Yoseph Yechieli, Clifford I. Voss, Abraham Starinsky, Yishai Weinstein
2012, Geochimica et Cosmochimica Acta (88) 237-254
We present a new approach to studying the behavior of radium isotopes in a coastal aquifer. In order to simulate radium isotope distributions in the dynamic flow field of the Dead Sea aquifer, a multi-species density dependent flow model (SUTRA-MS) was used. Field data show that the activity of 226Ra...
Microbial transformations of arsenic: Mobilization from glauconitic sediments to water
Adam C. Mumford, Julia L. Barringer, William Benzel, Pamela A. Reilly, L.Y. Young
2012, Water Research (46) 2859-2868
In the Inner Coastal Plain of New Jersey, arsenic (As) is released from glauconitic sediment to carbon- and nutrient-rich shallow groundwater. This As-rich groundwater discharges to a major area stream. We hypothesize that microbes play an active role in the mobilization of As from glauconitic subsurface sediments into groundwater in...
Mercury and other element exposure in tree swallows nesting at low pH and neutral pH lakes in northern Wisconsin USA
Thomas W. Custer, Christine M. Custer, Wayne E. Thogmartin, Paul M. Dummer, Ronald Rossmann, Kevin P. Kenow, Michael W. Meyer
2012, Environmental Pollution (163) 68-76
The primary objective of this study was to determine whether tree swallows (Tachycineta bicolor) demonstrate similar responses to lake pH and mercury (Hg) contamination in northern Wisconsin as do common loons (Gavia immer). Similar to common loons, Hg concentrations in the blood of tree swallow nestlings were higher, Hg concentrations...
Use of real-time PCR to detect canine parvovirus in feces of free-ranging wolves
L. David Mech, Emily S. Almberg, Douglas Smith, Sagar Goyal, Randall S. Singer
2012, Journal of Wildlife Diseases (48) 473-476
Using real-time PCR, we tested 15 wolf (Canis lupus) feces from the Superior National Forest (SNF), Minnesota, USA, and 191 from Yellowstone National Park (YNP), USA, collected during summer and 13 during winter for canine parvovirus (CPV)-2 DNA. We also tested 20 dog feces for CPV-2 DNA. The PCR assay...
Mapping socio-environmentally vulnerable populations access and exposure to ecosystem services at the U.S.-Mexico borderlands
Laura M. Norman, Miguel L. Villarreal, Francisco Lara-Valencia, Yongping Yuan, Wenming Nie, Sylvia Wilson, Gladys Amaya, Rachel Sleeter
2012, Applied Geography (34) 413-424
Socio-environmental vulnerable populations are often unrepresented in land-use planning yet have great potential for loss when exposed to changes in ecosystem services. Administrative boundaries, cultural differences, and language barriers increase the disassociation between land-use management and marginalized populations living in the U.S.–Mexico borderlands. This paper describes the development of a...
Preferential flow occurs in unsaturated conditions
John R. Nimmo
2012, Hydrological Processes (26) 786-789
Because it commonly generates high-speed, high-volume flow with minimal exposure to solid earth materials, preferential flow in the unsaturated zone is a dominant influence in many problems of infiltration, recharge, contaminant transport, and ecohydrology. By definition, preferential flow occurs in a portion of a medium – that is, a preferred...
Development and evaluation of a boat-mounted RFID antenna for monitoring freshwater mussels
Jesse R. Fischer, Travis E. Neebling, Michael C. Quist
2012, Freshwater Science (31) 148-153
Development of radio frequency identification (RFID) technology and passive integrated transponder (PIT) tags has substantially increased the ability of researchers and managers to monitor populations of aquatic organisms. However, use of transportable RFID antenna systems (i.e., backpack-mounted) is currently limited to wadeable aquatic environments (<1.4 m water depth). We describe...
Introduction to geospatial semantics and technology workshop handbook
Dalia E. Varanka
2012, Open-File Report 2012-1109
The workshop is a tutorial on introductory geospatial semantics with hands-on exercises using standard Web browsers. The workshop is divided into two sections, general semantics on the Web and specific examples of geospatial semantics using data from The National Map of the U.S. Geological Survey and the Open Ontology Repository....
Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011
Wesley T. Tibbits, Kyle D. Martens, Patrick J. Connolly
2012, Open-File Report 2012-1108
Introduction The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program...
Representation of regional urban development conditions using a watershed-based gradient study design
Silvia Terziotti, Gerard McMahon, Amanda H. Bell
2012, Scientific Investigations Report 2012-5070
As part of the U.S. Geological Survey National Water-Quality Assessment Program, the effects of urbanization on stream ecosystems (EUSE) have been intensively investigated in nine metropolitan areas in the United States, including Boston, Massachusetts; Atlanta, Georgia; Birmingham, Alabama; Raleigh, North Carolina; Salt Lake City, Utah; Denver, Colorado; Dallas–Fort Worth, Texas;...
Sound data management as a foundation for natural resources management and science
Thomas E. Burley
2012, Fact Sheet 2011-3038
Effective decision making is closely related to the quality and completeness of available data and information. Data management helps to ensure data quality in any discipline and supports decision making. Managing data as a long-term scientific asset helps to ensure that data will be usable beyond the original intended application....
Biological assessment of environmental flows for Oklahoma
William L. Fisher, Titus S. Seilheimer, Jason M. Taylor
2012, Open-File Report 2012-1114
Large-scale patterns in fish assemblage structure and functional groups are influenced by alterations in streamflow regime. In this study, we defined an objective threshold for alteration for Oklahoma streams using a combination of the expected range of 27 flow indices and a discriminant analysis to predict flow regime group. We...
Invertebrate response to changes in streamflow hydraulics in two urban areas in the United States
Rodney R. Knight, Thomas F. Cuffney
2012, Scientific Investigations Report 2012-5035
Stream hydrology is foundational to aquatic ecosystems and has been shown to be a structuring element for fish and invertebrates. The relations among urbanization, hydraulics, and invertebrate communities were investigated by the U.S. Geological Survey, National Water-Quality Assessment Program by using measures of stream hydraulics in two areas of the...
Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007-09
Sara L. Caldwell Eldridge, Tamara M. Wood, Kathy R. Echols
2012, Scientific Investigations Report 2012-5069
Phytoplankton blooms dominated by cyanobacteria that occur annually in hypereutrophic Upper Klamath Lake, Oregon, produce microcystins at concentrations that may contribute to the decline in populations of endangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers. During 2007–09, water samples were collected from Upper Klamath Lake to determine the...
Dissolved oxygen analysis, TMDL model comparison, and particulate matter shunting—Preliminary results from three model scenarios for the Klamath River upstream of Keno Dam, Oregon
Annett B. Sullivan, Stewart A. Rounds, Michael L. Deas, I. Ertugrul Sogutlugil
2012, Open-File Report 2012-1101
Efforts are underway to identify actions that would improve water quality in the Link River to Keno Dam reach of the Upper Klamath River in south-central Oregon. To provide further insight into water-quality improvement options, three scenarios were developed, run, and analyzed using previously calibrated CE-QUAL-W2 hydrodynamic and water-quality models....
Aquatic organism passage at road-stream crossings—synthesis and guidelines for effectiveness monitoring
Robert L. Hoffman, Jason B. Dunham, Bruce P. Hansen
2012, Open-File Report 2012-1090
Restoration and maintenance of passage for aquatic organisms at road-stream crossings represents a major management priority, involving an investment of hundreds of millions of dollars (for example, U.S. Government Accounting Office, 2001). In recent years, passage at hundreds of crossings has been restored, primarily by replacing barrier road culverts with...
Deposition and accumulation of airborne organic contaminants in Yosemite National Park, Calfornia
Alisa M. Mast, David A. Alvarez, Steven D. Zaugg
2012, Environmental Toxicology and Chemistry (31) 524-533
Deposition and accumulation of airborne organic contaminants in Yosemite National Park were examined by sampling atmospheric deposition, lichen, zooplankton, and lake sediment at different elevations. Passive samplers were deployed in high‐elevation lakes to estimate surface‐water concentrations. Detected compounds included current‐use pesticides chlorpyrifos, dacthal, and endosulfans and legacy compounds chlordane, dichlorodiphenyltrichloroethane‐related...