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Publication Extents

Not all publications have extents, not all extents are completely accurate
Elucidation of taste- and odor-producing bacteria and toxigenic cyanobacteria in a Midwestern drinking water supply reservoir by shotgun metagenomics analysis
Timothy Otten, Jennifer L. Graham, Theodore D. Harris, Theo Dreher
2016, Applied and Environmental Microbiology (82) 5410-5420
While commonplace in clinical settings, DNA-based assays for identification or enumeration of drinking water pathogens and other biological contaminants remain widely unadopted by the monitoring community. In this study, shotgun metagenomics was used to identify taste-and-odor producers and toxin-producing cyanobacteria over a 2-year period in a drinking water reservoir. The...
Relation between Enterococcus concentrations and turbidity in fresh and saline recreational waters, coastal Horry County, South Carolina, 2003–04
James Landmeyer, Thomas J. Garigen
2016, Open-File Report 2016-1015
Bacteria related to the intestinal tract of humans and other warm-blooded animals have been detected in fresh and saline surface waters used for recreational purposes in coastal areas of Horry County, South Carolina, since the early 2000s. Specifically, concentrations of the facultative anaerobic organism, Enterococcus, have been observed to exceed...
Spatial variations in fault friction related to lithology from rupture and afterslip of the 2014 South Napa, California, earthquake
Michael Floyd, Richard Walters, John Elliot, Gareth J. Funning, Jerry L. Svarc, Jessica R. Murray, Andy Hooper, Yngvar Larsen, Petar Marinkovic, Roland Bürgmann, Ingrid A. Johanson, Tim Wright
2016, Geophysical Research Letters (43) 6808-6816
Following earthquakes, faults are often observed to continue slipping aseismically. It has been proposed that this afterslip occurs on parts of the fault with rate-strengthening friction that are stressed by the mainshock, but our understanding has been limited by a lack of immediate, high-resolution observations. Here we show that the...
Microbial antimony biogeochemistry: Enzymes, regulation, and related metabolic pathways
Jingxin Li, Qian Wang, Ronald S. Oremland, Thomas R. Kulp, Christopher Rensing, Gejiao Wang
2016, Applied and Environmental Microbiology (82) 5482-5495
Antimony (Sb) is a toxic metalloid that occurs widely at trace concentrations in soil, aquatic systems, and the atmosphere. Nowadays, with the development of its new industrial applications and the corresponding expansion of antimony mining activities, the phenomenon of antimony pollution has become an increasingly serious concern. In recent years,...
Elemental analysis using a handheld X-Ray fluorescence spectrometer
Krishangi D. Groover, John A. Izbicki
2016, Fact Sheet 2016-3043
The U.S. Geological Survey is collecting geologic samples from local stream channels, aquifer materials, and rock outcrops for studies of trace elements in the Mojave Desert, southern California. These samples are collected because geologic materials can release a variety of elements to the environment when exposed to water. The...
Assessing wildlife benefits and carbon storage from restored and natural coastal marshes in the Nisqually River Delta: Determining marsh net ecosystem carbon balance
Frank Anderson, Brian A. Bergamaschi, Lisamarie Windham-Myers, Isa Woo, Susan De La Cruz, Judith Z. Drexler, Kristin Byrd, Karen M. Thorne
2016, Fact Sheet 2016-3042
Working in partnership since 1996, the U.S. Fish and Wildlife Service and the Nisqually Indian Tribe have restored 902 acres of tidally influenced coastal marsh in the Nisqually River Delta (NRD), making it the largest estuary-restoration project in the Pacific Northwest to date. Marsh restoration increases the capacity of the...
Estimation of upstream water use with Ohio’s StreamStats application
G. F. Koltun, Mark R. Nardi, Kimberly H. Shaffer
2016, Scientific Investigations Report 2016-5077
This report describes the analytical methods and results of a pilot study to enhance the Ohio StreamStats application by adding the ability to obtain water-use information for selected areas in the northeast quadrant of Ohio. Water-use estimates are determined in StreamStats through a simple multistep process.  Water-use data used to develop...
Changes in habitat use and distribution of mouflon in the Kahuku Unit of Hawai‘i Volcanoes National Park
Bronson Palupe, Christina R. Leopold, Steven C. Hess, Jonathan K. Faford, Dexter Pacheco, Seth W. Judge
2016, Pacific Conservation Biology (22) 308-311
European mouflon sheep (Ovis gmelini musimon) were introduced to Kahuku Ranch on Hawai‘i Island in 1968 and 1974 for trophy hunting and have been detrimental to the native ecosystem by trampling, bark stripping, and browsing vegetation. In 2003, Hawai‘i Volcanoes National Park acquired Kahuku Ranch and managers began removing mouflon....
Generation and migration of Bitumen and oil from the oil shale interval of the Eocene Green River formation, Uinta Basin, Utah
Ronald C. Johnson, Justin E. Birdwell, Tracey J. Mercier
2016, Book chapter, Hydrocarbon source rocks in unconventional plays
The results from the recent U.S. Geological Survey assessment of in-place oil shale resources of the Eocene Green River Formation, based primarily on the Fischer assay method, are applied herein to define areas where the oil shale interval is depleted of some of its petroleum-generating potential along the deep structural...
Nutrient delivery to Lake Winnipeg from the Red-Assiniboine River Basin – A binational application of the SPARROW model
Glenn A. Benoy, R. Wayne Jenkinson, Dale M. Robertson, David A. Saad
2016, Canadian Water Resources Journal (41) 429-447
Excessive phosphorus (TP) and nitrogen (TN) inputs from the Red–Assiniboine River Basin (RARB) have been linked to eutrophication of Lake Winnipeg; therefore, it is important for the management of water resources to understand where and from what sources these nutrients originate. The RARB straddles the Canada–United States border and includes...
Spatial modeling of wild bird risk factors to investigate highly pathogenic A(H5N1) avian influenza virus transmission
Diann J. Prosser, Laura L. Hungerford, R. Michael Erwin, Mary Ann Ottinger, John Y. Takekawa, Scott H. Newman, Xianming Xiao, Erie C. Ellis
2016, Avian Diseases (60) 329-336
One of the longest-persisting avian influenza viruses in history, highly pathogenic avian influenza virus (HPAIV) A(H5N1), continues to evolve after 18 years, advancing the threat of a global pandemic. Wild waterfowl (family Anatidae), are reported as secondary transmitters of HPAIV, and primary reservoirs for low-pathogenic avian influenza viruses, yet spatial...
The potential uses of operational earthquake forecasting
Edward H. Field, Thomas Jordan, Lucille M. Jones, Andrew Michael, Michael L. Blanpied
2016, Seismological Research Letters (87) 313-322
This article reports on a workshop held to explore the potential uses of operational earthquake forecasting (OEF). We discuss the current status of OEF in the United States and elsewhere, the types of products that could be generated, the various potential users and uses of OEF, and the need for...
Environment, host, and fungal traits predict continental-scale white-nose syndrome in bats
David T.S. Hayman, Juliet R.C. Pulliam, Jonathan C. Marshall, Paul M. Cryan, Colleen T. Webb
2016, Science Advances (2)
White-nose syndrome is a fungal disease killing bats in eastern North America, but disease is not seen in European bats and is less severe in some North American species. We show that how bats use energy during hibernation and fungal growth rates under different environmental conditions can explain how some...
Waterbird nest-site selection is influenced by neighboring nests and island topography
C. Alex Hartman, Joshua T. Ackerman, John Y. Takekawa, Mark P. Herzog
2016, Journal of Wildlife Management (80) 1267-1279
Avian nest-site selection is influenced by factors operating across multiple spatial scales. Identifying preferred physical characteristics (e.g., topography, vegetation structure) can inform managers to improve nesting habitat suitability. However, social factors (e.g., attraction, territoriality, competition) can complicate understanding physical characteristics preferred by nesting birds. We simultaneously evaluated the physical characteristics...
Evaluating the potential effects of hurricanes on long-term sediment accumulation in two micro-tidal sub-estuaries: Barnegat Bay and Little Egg Harbor, New Jersey, U.S.A.
Marci E. Marot, Christopher G. Smith, Alisha M. Ellis, Cathryn J. Wheaton
2016, Data Series 993
Barnegat Bay, located along the eastern shore of New Jersey, was significantly impacted by Hurricane Sandy in October 2012. Scientists from the U.S. Geological Survey (USGS) developed a multidisciplinary study of sediment transport and hydrodynamics to understand the mechanisms that govern estuarine and wetland responses to storm forcing. This report...
Occurrence and concentrations of selected trace elements and halogenated organic compounds in stream sediments and potential sources of polychlorinated biphenyls, Leon Creek, San Antonio, Texas, 2012–14
Jennifer T. Wilson
2016, Scientific Investigations Report 2016-5039
The Texas Department of State Health Services issued fish consumption advisories in 2003 and 2010 for Leon Creek in San Antonio, Texas, based on elevated concentrations of polychlorinated biphenyls (PCBs) in fish tissues. The U.S. Geological Survey (USGS) measured elevated PCB concentrations in stream-sediment samples collected during 2007–9 from Leon...
Book review: Large carnivore conservation: Integrating science and policy in the North American West
A. J. Albertsen, M. M. Cox, E. E. Ernst, H. J. Haley, Robert W. Klaver, D. A. Loney, M. M. Mackert, A. L. McCombs, F. Piatscheck, V. M. Pocius, D. S. Stein
2016, Journal of Mammalogy (20) 1-3
Dr. Klaver reviewed Large Carnivore Conservation as part of a graduate seminar and seminar participants represented the full range of readers who might be interested in the book: natural resource managers, citizen advocates, researchers, and students. Although we encountered a variety of opinions based on our different backgrounds and orientations,...
Do the rich get richer? Varying effects of tree species identity and diversity on the richness of understory taxa
Juilette Champagne, C. E. Timothy Paine, Donald Schoolmaster, Robert Stejskal, Daniel Volarik, Jan Šebesta, Filip Trnka, Tomas Koutecky, Petr Svarc, Martin Svatek, Andy Hector, Radim Matula
2016, Ecology (97) 2364-2373
Understory herbs and soil invertebrates play key roles in soil formation and nutrient cycling in forests. Studies suggest that diversity in the canopy and in the understory are positively associated, but these studies often confound the effects of tree species diversity with those of tree species identity and abiotic conditions....
Comparing three approaches of evapotranspiration estimation in mixed urban vegetation; field-based, remote sensing-based and observational-based methods
Hamideh Nouri, Edward P. Glenn, Simon Beecham, Sattar Chavoshi Boroujeni, Paul Sutton, Sina Alaghmand, Pamela L. Nagler, Behnaz Noori
2016, Remote Sensing (8)
Despite being the driest inhabited continent, Australia has one of the highest per capita water consumptions in the world. In addition, instead of having fit-for-purpose water supplies (using different qualities of water for different applications), highly treated drinking water is used for nearly all of Australia’s urban water supply needs,...
Disease epidemics: Lessons for resilience in an increasingly connected world
Craig R. Allen, S.N. DeWitte, M.H. Kurth, I. Linkov
2016, Journal of Public Health
In public health, the term resilience often refers to the personality traits that individuals possess which help them endure and recover from stressors. However, resilience as a system characteristic, especially in regards to complex social-ecological systems, can be informative for public health at scales larger than the individual. Acute shocks...
Object-based forest classification to facilitate landscape-scale conservation in the Mississippi Alluvial Valley
Michael Mitchell, R. Randy Wilson, Daniel J. Twedt, Anne Mini, J. Dale James
2016, Remote Sensing Applications: Society and Environment (4) 55-60
The Mississippi Alluvial Valley is a floodplain along the southern extent of the Mississippi River extending from southern Missouri to the Gulf of Mexico. This area once encompassed nearly 10 million ha of floodplain forests, most of which has been converted to agriculture over the past two centuries. Conservation programs...
Genome sequence of a novel H14N7 subtype influenza A virus isolated from a blue-winged teal (Anas discors) harvested in Texas, USA
Andrew M. Ramey, Andrew B. Reeves, Rebecca L. Poulson, Deborah L. Carter, Nicholas Davis-Fields, David E. Stallknecht
2016, Genome Announcements (4)
We report here the complete genome sequence of a novel H14N7 subtype influenza A virus (IAV) isolated from a blue-winged teal (Anas discors) harvested in Texas, USA. The genomic characteristics of this IAV strain with a previously undetected subtype combination suggest recent viral evolution within the New World wild-bird IAV...
Regional effects of agricultural conservation practices on nutrient transport in the Upper Mississippi River Basin
Ana Maria Garcia, Richard B. Alexander, Jeffrey G. Arnold, Lee Norfleet, Michael J. White, Dale M. Robertson, Gregory E. Schwarz
2016, Environmental Science & Technology (50) 6991-7000
Despite progress in the implementation of conservation practices, related improvements in water quality have been challenging to measure in larger river systems. In this paper we quantify these downstream effects by applying the empirical U.S. Geological Survey water-quality model SPARROW to investigate whether spatial differences in conservation intensity were statistically...
Stock assessment in inland fisheries: a foundation for sustainable use and conservation
Kai Lorenzen, Ian G. Cowx, R. E. M. Entsua-Mensah, Nigel P. Lester, J.D. Koehn, R.G. Randall, N. So, Scott A. Bonar, David B. Bunnell, Paul A. Venturelli, Shannon D. Bower, Steven J. Cooke
2016, Reviews in Fish Biology and Fisheries (26) 405-440
Fisheries stock assessments are essential for science-based fisheries management. Inland fisheries pose challenges, but also provide opportunities for biological assessments that differ from those encountered in large marine fisheries for which many of our assessment methods have been developed. These include the number and diversity of fisheries, high levels of...
Resource waves: phenological diversity enhances foraging opportunities for mobile consumers
Jonathan B. Armstrong, Gaku Takimoto, Daniel E. Schindler, Matthew M. Hayes, Matthew Kauffman
2016, Ecology (97) 1099-1112
Time can be a limiting constraint for consumers, particularly when resource phenology mediates foraging opportunity. Though a large body of research has explored how resource phenology influences trophic interactions, this work has focused on the topics of trophic mismatch or predator swamping, which typically occur over short periods, at small...