Flexible characterization of animal movement pattern using net squared displacement and a latent state model
Guillaume Bastille-Rousseau, Jonathan Potts, Charles B. Yackulic, Jacqueline L. Frair, Hance Ellington, Stephen Blake
2016, Movement Ecology (4)
Background Characterizing the movement patterns of animals is an important step in understanding their ecology. Various methods have been developed for classifying animal movement at both coarse (e.g., migratory vs. sedentary behavior) and fine (e.g., resting vs. foraging) scales. A popular approach for classifying movements at...
A new panel of SNP markers for the individual identification of North American pumas
Robert R. Fitak, Ashwin Naidu, Ron W. Thompson, Melanie Culver
2016, Journal of Fish and Wildlife Management (7) 13-27
Pumas Puma concolor are one of the most studied terrestrial carnivores because of their widespread distribution, substantial ecological impacts, and conflicts with humans. Over the past decade, managing pumas has involved extensive efforts including the use of genetic methods. Microsatellites have been the most commonly used genetic markers; however, technical...
Geologic map of the Vancouver and Orchards quadrangles and parts of the Portland and Mount Tabor quadrangles, Clark County, Washington, and Multnomah County, Oregon
Jim E. O'Connor, Charles M. Cannon, Joseph F. Mangano, Russell C. Evarts
2016, Scientific Investigations Map 3357
IntroductionThis is a 1:24,000-scale geologic map of the Vancouver and Orchards quadrangles and parts of the Portland and Mount Tabor quadrangles in the States of Washington and Oregon. The map area is within the Portland Basin and includes most of the city of Vancouver, Washington; parts of Clark County, Washington;...
The Elizabeth Lake paleoseismic site: Rupture pattern constraints for the past ~800 years for the Mojave section of the south-central San Andreas Fault
Sean Bemis, Katherine M. Scharer, James F. Dolan, Ed Rhodes
2016, Conference Paper, Proceeding of the 7th PATA days, 2016
The southern San Andreas Fault in California has hosted two historic surface-rupturing earthquakes, the ~M7 1812 Wrightwood earthquake and the ~M7.9 1857 Fort Tejon earthquake (e.g., Sieh, 1978; Jacoby et al., 1988). Numerous paleoseismic studies have established chronologies of historic and prehistoric earthquakes at sites along the full length of...
Combined use of isotopic and hydrometric data to conceptualize ecohydrological processes in a high-elevation tropical ecosystem
Giovanny M Mosquera, Rolando Celleri, Patricio X Lazo, Kellie B Vache, Steven S. Perakis, Patricio Crespo
2016, Hydrological Processes (30) 2930-2947
Few high-elevation tropical catchments worldwide are gauged and even fewer are studied using combined hydrometric and isotopic data. Consequently, we lack information needed to understand processes governing rainfall-runoff dynamics and to predict their influence on downstream ecosystem functioning. To address this need, we present a combination of hydrometric and water...
Integrating biology, field logistics, and simulations to optimize parameter estimation for imperiled species
Wendy E. Lanier, Larissa L. Bailey, Erin L. Muths
2016, Ecological Modelling (335) 16-23
Conservation of imperiled species often requires knowledge of vital rates and population dynamics. However, these can be difficult to estimate for rare species and small populations. This problem is further exacerbated when individuals are not available for detection during some surveys due to limited access, delaying surveys and creating mismatches...
Geologic framework for the national assessment of carbon dioxide storage resources—Southern Rocky Mountain Basins: Chapter M in Geologic framework for the national assessment of carbon dioxide storage resources
Matthew D. Merrill, Ronald M. Drake II, Marc L. Buursink, William H. Craddock, Joseph A. East, Ernie R. Slucher, Peter D. Warwick, Sean T. Brennan, Madalyn S. Blondes, Philip A. Freeman, Steven M. Cahan, Christina A. DeVera, Celeste D. Lohr
Peter D. Warwick, M.D. Corum, editor(s)
2016, Open-File Report 2012-1024-M
The U.S. Geological Survey has completed an assessment of the potential geologic carbon dioxide storage resources in the onshore areas of the United States. To provide geological context and input data sources for the resources numbers, framework documents are being prepared for all areas that were investigated as part of...
Geometric quality assessment of lidar data based on swath overlap
Aparajithan Sampath, Hans K. Heidemann, Gregory L. Stensaas
2016, Conference Paper
This paper provides guidelines on quantifying the relative horizontal and vertical errors observed between conjugate features in the overlapping regions of lidar data. The quantification of these errors is important because their presence quantifies the geometric quality of the data. A data set can be said to have good geometric...
Groundwater quality from private domestic water-supply wells in the vicinity of petroleum production in southwestern Indiana
Martin R. Risch, Cheryl A. Silcox
2016, Open-File Report 2016-1081
The U.S. Geological Survey provided technical support to the Agency for Toxic Substances and Disease Registry for site selection and sample collection and analysis in a 2012 investigation of groundwater quality from 29 private domestic water-supply wells in the vicinity of petroleum production in southwestern Indiana. Petroleum hydrocarbons, oil and...
Hydrogeology and water quality of the Floridan aquifer system and effect of Lower Floridan aquifer withdrawals on the Upper Floridan aquifer at Barbour Pointe Community, Chatham County, Georgia, 2013
Gerard Gonthier, John S. Clarke
2016, Scientific Investigations Report 2016-5028
Two test wells were completed at the Barbour Pointe community in western Chatham County, near Savannah, Georgia, in 2013 to investigate the potential of using the Lower Floridan aquifer as a source of municipal water supply. One well was completed in the Lower Floridan aquifer at a depth of 1,080...
Tree Cover Mapping Tool—Documentation and user manual
Suzanne E. Cotillon, Melissa L. Mathis
2016, Open-File Report 2016-1067
The Tree Cover Mapping (TCM) tool was developed by scientists at the U.S. Geological Survey Earth Resources Observation and Science Center to allow a user to quickly map tree cover density over large areas using visual interpretation of high resolution imagery within a geographic information system interface. The TCM tool...
Field survey of earthquake effects from the magnitude 4.0 southern Maine earthquake of October 16, 2012
Amy L. Radakovich, Alex J. Fergusen, John Boatwright
2016, Open-File Report 2016-1071
The magnitude 4.0 earthquake that occurred on October 16, 2012, near Hollis Center and Waterboro in southwestern Maine surprised and startled local residents but caused only minor damage. A two-person U.S. Geological Survey (USGS) team was sent to Maine to conduct an intensity survey and document the damage. The only...
A software tool for rapid flood inundation mapping
James Verdin, Kristine Verdin, Melissa L. Mathis, Tamuka Magadzire, Eric Kabuchanga, Mark Woodbury, Hussein Gadain
2016, Open-File Report 2016-1038
The GIS Flood Tool (GFT) was developed by the U.S. Geological Survey with support from the U.S. Agency for International Development’s Office of U.S. Foreign Disaster Assistance to provide a means for production of reconnaissance-level flood inundation mapping for data-sparse and resource-limited areas of the world. The GFT has also...
Status of the California Red-legged Frog (Rana draytonii) in the State of Baja California, México
Anny Peralta-Garcia, Bradford D. Hellingsworth, Jonathan Q. Richmond, Jorge H. Valdez-Villavicencio, Gorgonio Ruiz-Campos, Robert N. Fisher, Pedro Cruz-Hernandez, Patricia Galina-Tessaro
2016, Herpetological Conservation and Biology (11) 168-180
The California Red-legged Frog (Rana draytonii) is a threatened species in the United States that has undergone population declines, especially in southern California. Due to the lack of information on the status of Mexican populations, we surveyed for the presence of R. draytonii in Baja California and assessed possible threats...
Effects of turbidity on predation vulnerability of juvenile humpback chub to rainbow and brown trout
David L. Ward, Rylan Morton-Starner, Benjamin M. Vaage
2016, Journal of Fish and Wildlife Management (7) 1-8
Predation on juvenile native fish by introduced rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta is considered a significant threat to the persistence of endangered humpback chub Gila cypha in the Colorado River in Grand Canyon. Diet studies of rainbow and brown trout in Glen and Grand canyons indicate...
Biodiversity conservation and environmental change: Using palaeoecology to manage dynamic landscapes in the Anthropocene.
Charles B. Yackulic
2016, The Quarterly Review of Biology 206-206
No abstract available....
A fault-based model for crustal deformation, fault slip-rates and off-fault strain rate in California
Yuehua Zeng, Zheng-Kang Shen
2016, Bulletin of the Seismological Society of America (106) 766-784
We invert Global Positioning System (GPS) velocity data to estimate fault slip rates in California using a fault‐based crustal deformation model with geologic constraints. The model assumes buried elastic dislocations across the region using Uniform California Earthquake Rupture Forecast Version 3 (UCERF3) fault geometries. New GPS velocity and geologic slip‐rate...
Malberg mystery solved!
Shannon Barber-Meyer
2016, International Wolf (26) 22-23
No abstract available....
Larval long-toed salamanders incur nonconsumptive effects in the presence of nonnative trout
Erin K. Kenison, Andrea R. Litt, David S. Pilliod, Thomas E. McMahon
2016, Ecosphere (7)
Predators can influence prey directly through consumption or indirectly through nonconsumptive effects (NCEs) by altering prey behavior, morphology, and life history. We investigated whether predator-avoidance behaviors by larval long-toed salamanders (Ambystoma macrodactylum) in lakes with nonnative trout result in NCEs on morphology and development. Field studies in lakes with and...
At the nexus of fire, water and society
Deborah A. Martin
2016, Philosophical Transactions of the Royal Society B: Biological Sciences (371)
The societal risks of water scarcity and water-quality impairment have received considerable attention, evidenced by recent analyses of these topics by the 2030 Water Resources Group, the United Nations and the World Economic Forum. What are the effects of fire on the predicted water scarcity and declines in water quality?...
Gene transcript profiling in sea otters post-Exxon Valdez oil spill: A tool for marine ecosystem health assessment
Lizabeth Bowen, A. Keith Miles, Brenda E. Ballachey, Shannon C. Waters-Dynes, James L. Bodkin
2016, Journal of Marine Science and Engineering (4)
Using a panel of genes stimulated by oil exposure in a laboratory study, we evaluated gene transcription in blood leukocytes sampled from sea otters captured from 2006–2012 in western Prince William Sound (WPWS), Alaska, 17–23 years after the 1989 Exxon Valdez oil spill (EVOS). We compared WPWS sea otters to reference...
Changes to extreme wave climates of islands within the Western Tropical Pacific throughout the 21st century under RCP 4.5 and RCP 8.5, with implications for island vulnerability and sustainability
James B. Shope, Curt D. Storlazzi, Li H. Erikson, Christie Hegermiller
2016, Global and Planetary Change (141) 25-38
Waves are the dominant influence on coastal morphology and ecosystem structure of tropical Pacific islands. Wave heights, periods, and directions for the 21st century were projected using near-surface wind fields from four atmosphere-ocean coupled global climate models (GCM) under representative concentration pathways (RCP) 4.5 and 8.5. GCM-derived wind fields forced...
Baseline and projected future carbon storage and greenhouse-gas fluxes in ecosystems of Alaska
Zhiliang Zhu, A. David McGuire, editor(s)
2016, Professional Paper 1826
This assessment was conducted to fulfill the requirements of section 712 of the Energy Independence and Security Act of 2007 and to contribute to knowledge of the storage, fluxes, and balance of carbon and methane gas in ecosystems of Alaska. The carbon and methane variables were examined for major terrestrial...
Can captive populations function as sources of genetic variation for reintroductions into the wild? A case study of the Arabian oryx from the Phoenix Zoo and the Shaumari Wildlife Reserve, Jordan
Alexander Ochoa, Stuart A. Wells, Gary West, Ma’en Al-Smadi, Sergio A. Redondo, Sydnee R. Sexton, Melanie Culver
2016, Conservation Genetics (17) 1145-1155
The Arabian oryx (Oryx leucoryx) historically ranged across the Arabian Peninsula and neighboring countries until its extirpation in 1972. In 1963–1964 a captive breeding program for this species was started at the Phoenix Zoo (PHX); it ultimately consisted of 11 animals that became known as the ‘World Herd’....
Morphodynamics of prograding beaches: A synthesis of seasonal- to century-scale observations of the Columbia River littoral cell
Peter Ruggiero, George Kaminsky, Guy R. Gelfenbaum, Nicholas Cohn
2016, Marine Geology (376) 51-68
Findings from nearly two decades of research focused on the Columbia River littoral cell (CRLC), a set of rapidly prograding coastal barriers and strand-plains in the U.S. Pacific Northwest, are synthesized to investigate the morphodynamics associated with prograding beaches. Due to a large sediment supply from the Columbia...
