Extraordinary sediment delivery and rapid geomorphic response following the 2008–2009 eruption of Chaitén Volcano, Chile
Jon J. Major, Daniel Bertin, Thomas C. Pierson, Alvaro Amigo, Andres Iroume, Hector Ulloa, Jonathan M. Castro
2016, Water Resources Research (52) 5075-5094
The 10 day explosive phase of the 2008–2009 eruption of Chaitén volcano, Chile, draped adjacent watersheds with a few cm to >1 m of tephra. Subsequent lava-dome collapses generated pyroclastic flows that delivered additional sediment. During the waning phase of explosive activity, modest rainfall triggered an extraordinary sediment flush which...
A framework for effective use of hydroclimate models in climate-change adaptation planning for managed habitats with limited hydrologic response data
Rachel A. Esralew, Lorraine E. Flint, James H. Thorne, Ryan Boynton, Alan L. Flint
2016, Environmental Management (58) 60-75
Climate-change adaptation planning for managed wetlands is challenging under uncertain futures when the impact of historic climate variability on wetland response is unquantified. We assessed vulnerability of Modoc National Wildlife Refuge (MNWR) through use of the Basin Characterization Model (BCM) landscape hydrology model, and six global climate models, representing projected...
Hepatic insulin-like growth-factor binding protein (igfbp) responses tofood restriction in Atlantic salmon smolts
Jason P. Breves, Silas K. Phipps-Costin, Chelsea K. Fujimoto, Ingibjorg E. Einarsdottir, Amy M. Regish, Björn Thrandur Björnsson, Stephen D. McCormick
2016, General and Comparative Endocrinology (233) 79-87
The growth hormone (Gh)/insulin-like growth-factor (Igf) system plays a central role in the regulation of growth in fishes. However, the roles of Igf binding proteins (Igfbps) in coordinating responses to food availability are unresolved, especially in anadromous fishes preparing for seaward migration. We assayed plasma Gh, Igf1, thyroid hormones and...
Anadromous salmonids in the Delta: New science 2006–2016
Russell W. Perry, Rebecca A. Buchanan, Patricia L. Brandes, Jon R. Burau, Joshua A Israel
2016, San Francisco Estuary and Watershed Science (14)
As juvenile salmon enter the Sacramento–SanJoaquin River Delta (“the Delta”) they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades...
Assessing landslide potential on coastal bluffs near Mukilteo, Washington—Geologic site characterization for hydrologic monitoring
Benjamin B. Mirus, Joel B. Smith, Benjamin Stark, York Lewis, Abigail Michel, Rex L. Baum
2016, Open-File Report 2016-1082
During the summer 2015, the U.S. Geological Survey collected geologic and geotechnical data for two sites on coastal bluffs along the eastern shore of Puget Sound, Washington. The U.S. Geological Survey also installed hydrologic instrumentation at the sites and collected specimens for laboratory testing. The two sites are located on...
Tick-, mosquito-, and rodent-borne parasite sampling designs for the National Ecological Observatory Network
Yuri P. Springer, David Hoekman, Pieter T. J. Johnson, Paul A. Duffy, Rebecca A. Hufft, David T. Barnett, Brian F. Allan, Brian R. Amman, Christopher M. Barker, Roberto Barrera, Charles B. Beard, Lorenza Beati, Mike Begon, Mark S. Blackmore, William E. Bradshaw, Dustin Brisson, Charles H. Calisher, James E. Childs, Maria A. Diuk-Wasser, Richard J. Douglass, Rebecca J. Eisen, Desmond H. Foley, Janet E. Foley, Holly D. Gaff, Scott L. Gardner, Howard S. Ginsberg, Gregory E. Glass, Sarah A. Hamer, Mary H. Hayden, Brian Hjelle, Christina M. Holzapfel, Steven A. Juliano, Laura D. Kramer, Amy J. Kuenzi, Shannon L. LaDeau, Todd P. Livdahl, James N. Mills, Chester G. Moore, Serge Morand, Roger S. Nasci, Nicholas H. Ogden, Richard S. Ostfeld, Robert R. Parmenter, Joseph Piesman, William K. Reisen, Harry M. Savage, Daniel E. Sonenshine, Andrea Swei, Michael J. Yabsley
2016, Ecosphere (7)
Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data...
Large wind ripples on Mars: A record of atmospheric evolution
M. G. A. Lapotre, R. C. Ewing, M. P. Lamb, W. W. Fischer, J. P. Grotzinger, D. M. Rubin, K. W. Lewis, M. J. Ballard, Mitch D. Day, S. Gupta, S. G. Banham, N. T. Bridges, D. J. Des Marais, A. A. Fraeman, J. A. Grant, Kenneth E. Herkenhoff, D. W. Ming, M. A. Mischna, M. S. Rice, D. Y. Sumner, A. R. Vasavada, R. A. Yingst
2016, Science (353) 55-58
Wind blowing over sand on Earth produces decimeter-wavelength ripples and hundred-meter– to kilometer-wavelength dunes: bedforms of two distinct size modes. Observations from the Mars Science Laboratory Curiosity rover and the Mars Reconnaissance Orbiter reveal that Mars hosts a third stable wind-driven bedform, with meter-scale wavelengths. These bedforms are spatially uniform...
Esperance: Multiple episodes of aqueous alteration involving fracture fills and coatings at Matijevic Hill, Mars
Benton C. Clark, Richard V. Morris, Kenneth E. Herkenhoff, William H. Farrand, Ralf Gellert, Bradley L. Jolliff, Raymond E. Arvidson, Steven W. Squyres, David W. Mittelfehldt, Douglas W. Ming, Albert S. Yen
2016, American Mineralogist (101) 1515-1526
In the search for evidence of past aqueous activity by the Mars Exploration Rover Opportunity, fracture-filling veins and rock coatings are prime candidates for exploration. At one location within a segment of remaining rim material surrounding Endeavour Crater, a set of “boxwork” fractures in an outcrop called Esperance are filled...
Exploration review
David R. Wilburn, Nick Karl
2016, Mining Engineering 30-51
This summary of international mineral exploration activities for the year 2015 draws upon information from industry sources, published literature, the SNL Metals & Mining (SNL) (Charlottesville, VA) data base, and specialists in the U.S. Geological Survey (USGS) National Minerals Information Center. The summary provides data on exploration budgets by region...
A water balance model to estimate flow through the Old and Middle River corridor
Stephen W. Andrews, Edward S. Gross, Paul H. Hutton
2016, San Francisco Estuary and Watershed Science (14)
We applied a water balance model to predict tidally averaged (subtidal) flows through the Old River and Middle River corridor in the Sacramento–San Joaquin Delta. We reviewed the dynamics that govern subtidal flows and water levels and adopted a simplified representation. In this water balance approach, we estimated...
Accretionary lapilli: what’s holding them together?
Paul M. Adams, David K. Lynch, David C. Buesch
2016, Conference Paper, Going LOCO: Investigations along the Lower Colorado River: 2016 Desert Symposium Field Guide and Proceedings
Accretionary lapilli from Tagus cone, Isla Isabela, Galápagos were analyzed using scanning electron microscope (SEM) and energy-dispersive X-ray spectroscopy (EDS) techniques. Our main findings are (1) the lapilli formed and hardened in a few minutes while still aloft in the dispersing eruption column. (2) Palagonite rinds developed first on the...
Application of a hybrid model to reduce bias and improve precision in population estimates for elk (Cervus elaphus) inhabiting a cold desert ecosystem
Kathryn A. Schoenecker, Bruce C. Lubow
2016, Journal of King Saud University - Science (28) 205-215
Accurately estimating the size of wildlife populations is critical to wildlife management and conservation of species. Raw counts or “minimum counts” are still used as a basis for wildlife management decisions. Uncorrected raw counts are not only negatively biased due to failure to account for undetected animals, but also provide...
The statistical power to detect cross-scale interactions at macroscales
Tyler Wagner, C. Emi Fergus, Craig A. Stow, Kendra S. Cheruvelil, Patricia A. Soranno
2016, Ecosphere (7)
Macroscale studies of ecological phenomena are increasingly common because stressors such as climate and land-use change operate at large spatial and temporal scales. Cross-scale interactions (CSIs), where ecological processes operating at one spatial or temporal scale interact with processes operating at another scale, have been documented in a variety of...
A large refined catalog of earthquake relocations and focal mechanisms for the Island of Hawai'i and its seismotectonic implications
Guoqing Lin, Paul G. Okubo
2016, Journal of Geophysical Research (121) 5031-5048
We present high-quality focal mechanisms based on a refined earthquake location catalog for the Island of Hawai'i, focusing on Mauna Loa and Kīlauea volcanoes. The relocation catalog is based on first-arrival times and waveform data of both compressional and shear waves for about 180,000 events on and near the Island...
Predicting arsenic in drinking water wells of the Central Valley, California
Joseph D. Ayotte, Bernard T. Nolan, JoAnn M. Gronberg
2016, Environmental Science & Technology (50) 7555-7563
Probabilities of arsenic in groundwater at depths used for domestic and public supply in the Central Valley of California are predicted using weak-learner ensemble models (boosted regression trees, BRT) and more traditional linear models (logistic regression, LR). Both methods captured major processes that affect arsenic concentrations, such as the chemical...
Community fisheries in eastern South Dakota: Angler demographics, use, and factors influencing satisfaction
Michael J. Greiner, David O. Lucchesi, Steven R. Chipps, Larry M. Gigliotti
2016, Human Dimensions of Wildlife (21) 254-263
We surveyed anglers on five community fishing lakes near Brookings, South Dakota to assess angler use and satisfaction. The community lakes attracted younger anglers when compared to statewide and national averages. Overall, satisfaction was generally high (74%) among anglers fishing community lakes. Logistic regression analysis showed that harvest rate, anglers...
Decision-making for foot-and-mouth disease control: Objectives matter
William J. M. Probert, Katriona Shea, Christopher J. Fonnesbeck, Michael C. Runge, Tim E. Carpenter, Salome Durr, M. Graeme Garner, Neil Harvey, Mark A. Stevenson, Colleen T. Webb, Marleen Werkman, Michael J. Tildesley, Matthew J. Ferrari
2016, Epidemics (15) 10-19
Formal decision-analytic methods can be used to frame disease control problems, the first step of which is to define a clear and specific objective. We demonstrate the imperative of framing clearly-defined management objectives in finding optimal control actions for control of disease outbreaks. We illustrate an analysis that can be...
Factors that affect parasitism of black-tailed prairie dogs by fleas
David A. Eads, John L. Hoogland
2016, Ecosphere (7) 1-12
Fleas (Insecta: Siphonaptera) are hematophagous ectoparasites that feed on vertebrate hosts. Fleas can reduce the fitness of hosts by interfering with immune responses, disrupting adaptive behaviors, and transmitting pathogens. The negative effects of fleas on hosts are usually most pronounced when fleas attain high densities. In lab studies, fleas desiccate...
Bayesian nitrate source apportionment to individual groundwater wells in the Central Valley by use of elemental and isotopic tracers
Katherine M Ransom, Mark N. Grote, Amanda Deinhart, Gary Eppich, Carol Kendall, Matthew E. Sanborn, A. Kate Sounders, Joshua Wimpenny, Qing-zhu Yin, Megan B. Young, Thomas Harter
2016, Water Resources Research (52) 5577-5597
Groundwater quality is a concern in alluvial aquifers that underlie agricultural areas, such as in the San Joaquin Valley of California. Shallow domestic wells (less than 150 m deep) in agricultural areas are often contaminated by nitrate. Agricultural and rural nitrate sources include dairy manure, synthetic fertilizers, and septic waste....
Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics
Jeffrey N. Houser
2016, Freshwater Science (35) 457-473
In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a, and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR)...
Parallelization of the TRIGRS model for rainfall-induced landslides using the message passing interface
M. Alvioli, R.L. Baum
2016, Environmental Modelling and Software (81) 122-135
We describe a parallel implementation of TRIGRS, the Transient Rainfall Infiltration and Grid-Based Regional Slope-Stability Model for the timing and distribution of rainfall-induced shallow landslides. We have parallelized the four time-demanding execution modes of TRIGRS, namely both the saturated and unsaturated model with finite and infinite soil depth options, within...
Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils
Christina Schädel, Martin K.-F. Bader, Edward A.G. Schuur, Christina Biasi, Rosvel Bracho, Petr Capek, Sarah De Baets, Katerina Diakova, Jessica Ernakovich, Cristian Estop-Aragones, David E. Graham, Iain P. Hartley, Colleen M. Iversen, Evan S. Kane, Christian Knoblauch, Massimo Lupascu, Pertti J. Martikainen, Susan M. Natali, Richard J. Norby, Jonathan A. O’Donnell, Taniya Roy Chowdhury, Hana Santruckova, Gaius Shaver, Victoria L. Sloan, Claire C. Treat, Merritt R. Turetsky, Mark P. Waldrop, Kimberly P. Wickland
2016, Nature Climate Change (6) 950-953
Increasing temperatures in northern high latitudes are causing permafrost to thaw, making large amounts of previously frozen organic matter vulnerable to microbial decomposition. Permafrost thaw also creates a fragmented landscape of drier and wetter soil conditions that determine the amount and form (carbon dioxide (CO2), or methane (CH4)) of carbon (C) released...
Variability in the sensitivity among model simulations of permafrost and carbon dynamics in the permafrost region between 1960 and 2009
A. David McGuire, Charles Koven, David M. Lawrence, Joy S. Clein, Jiangyang Xia, Christian Beer, Eleanor J. Burke, Guangsheng Chen, Xiaodong Chen, Christine Delire, Elchin Jafarov, Andrew H. MacDougall, Sergey S. Marchenko, Dmitry J. Nicolsky, Shushi Peng, Annette Rinke, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Bertrand Decharme, Altug Ekici, Isabelle Gouttevin, Tomohiro Hajima, Daniel J. Hayes, Duoying Ji, Gerhard Krinner, Dennis P. Lettenmaier, Yiqi Luo, Paul A. Miller, John C. Moore, Vladimir Romanovsky, Christina Schädel, Kevin Schaefer, Edward A.G. Schuur, Benjamin Smith, Tetsuo Sueyoshi, Qianlai Zhuang
2016, Global Biogeochemical Cycles (30) 1015-1037
A significant portion of the large amount of carbon (C) currently stored in soils of the permafrost region in the Northern Hemisphere has the potential to be emitted as the greenhouse gases CO2and CH4 under a warmer climate. In this study we evaluated the variability in the sensitivity of permafrost and...
A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.
Islam T.M. Hussein, Eric J. Ma, Brandt W. Meixell, Nichola J. Hill, Mark S. Lindberg, Randy A. Albrecht, Justin Bahl, Jonathan A. Runstadler
2016, Infection, Genetics and Evolution (41) 279-288
H9N2 influenza A viruses are on the list of potentially pandemic subtypes. Therefore, it is important to understand how genomic reassortment and genetic polymorphisms affect phenotypes of H9N2 viruses circulating in the wild bird reservoir. A comparative genetic analysis of North American H9N2 isolates of wild bird origin identified a...
Automated mapping of persistent ice and snow cover across the western U.S. with Landsat
David J. Selkowitz, Richard R. Forster
2016, ISPRS Journal of Photogrammetry and Remote Sensing (117) 126-140
We implemented an automated approach for mapping persistent ice and snow cover (PISC) across the conterminous western U.S. using all available Landsat TM and ETM+ scenes acquired during the late summer/early fall period between 2010 and 2014. Two separate validation approaches indicate this dataset provides...
