Hepeviruses of fish
William N. Batts
Frederick S. B. Kibenge, Marcos Godoy, editor(s)
2016, Book chapter, Aquaculture virology
Originally reported from California, the cutthroat trout virus (CTV) has now been isolated from eight species of salmonids in North America. Early work focused on the replication and physical characteristics of the small, round virus, but not until 20 years later was it determined to be most closely related to...
Paramyxoviruses of fish
Theodore R. Meyers, William N. Batts
Frederick S. B. Kibenge, Marcos Godoy, editor(s)
2016, Book chapter, Aquaculture virology
The first fish paramyxovirus was isolated from normal adult Chinook salmon returning to a coastal hatchery in Oregon in the fall of 1982. Subsequently, the virus was isolated from other stocks of adult Chinook salmon and one stock of adult coho salmon in California, Oregon, Washington and Alaska, leading to...
Comment on "No evidence of displacement due to wind turbines in breeding grassland songbirds"
Douglas H. Johnson
2016, The Condor (118) 674-675
A recent article published in The Condor: Ornithological Applications by Hale et al. (2014) is entitled, “No evidence of displacement due to wind turbines in breeding grassland songbirds.” The conclusion stated in that title, unfortunately, is based on inappropriate statistical analysis of data collected by the authors. In fact, their data provide evidence...
North American sturgeon otolith morphology
Marc A. Chalupnicki, Dawn E. Dittman
2016, Copeia (104) 260-266
Accurate expedient species identification of deceased sturgeon (Acipenseridae) when external physical characteristic analysis is inconclusive has become a high priority due to the endangered or threatened status of sturgeon species around the world. Examination of otoliths has provided useful information to aid in population management, age and size-class analysis, understanding...
Diel diet of fantail darter in a tributary to Lake Ontario, New York, USA
Marc A. Chalupnicki, James H. Johnson
2016, Journal of Freshwater Ecology (31) 659-664
The foraging behavior of benthic fishes in streams is seldom examined but is vital to the health of the aquatic community. We examined the feeding ecology of the fantail darter (Etheostoma flaballere) in Trout Brook, a tributary of the Salmon River in central New York, USA. Of the six...
Stratigraphy of the north polar layered deposits of Mars from high-resolution topography
Patricio Becerra, Shane Byrne, Michael M. Sori, Sarah Sutton, Kenneth E. Herkenhoff
2016, Journal of Geophysical Research E: Planets (121) 1445-1471
The stratigraphy of the layered deposits of the polar regions of Mars is theorized to contain a record of recent climate change linked to insolation changes driven by variations in the planet's orbital and rotational parameters. In order to confidently link stratigraphic signals to insolation periodicities, a description of the...
Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana
James G. Flocks, Joseph F. Terrano
2016, Open-File Report 2016-1069
Characterizing bathymetric change in coastal environments is an important component in understanding shoreline evolution, especially along barrier island platforms. Bathymetric change is a function of the regional sediment budget, long-term wave and current patterns, and episodic impact from high-energy events such as storms. Human modifications may also cause changes in...
Archive of bathymetry and backscatter data collected in 2014 nearshore Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana
Nancy T. DeWitt, Jake J. Fredericks, James G. Flocks, Jennifer L. Miselis, Stanley D. Locker, Jack L. Kindinger, Julie Bernier, Kyle W. Kelso, Billy J. Reynolds, Dana S. Wiese, Trevor Browning
2016, Data Series 1005
As part of the Barrier Island Monitoring Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off Breton and Gosier Islands, Louisiana, in July and August of 2014. To assist the United States Fish and Wildlife Service (USFWS) with restoration...
Baseline coastal oblique aerial photographs collected from Navarre Beach, Florida, to Breton Island, Louisiana, September 18–19, 2015
Karen L. M. Morgan
2016, Data Series 1008
The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project, conducts baseline and storm-response photography missions to document and understand the changes in vulnerability of the Nation's coasts to extreme storms. On September 18–19, 2015, the USGS conducted an oblique aerial photographic survey...
Future frequencies of extreme weather events in the National Wildlife Refuges of the conterminous U.S.
Sebastian Martinuzzi, Andrew J. Allstadt, Brooke L. Bateman, Patricia J. Heglund, Anna M. Pidgeon, Wayne E. Thogmartin, Stephen J. Vavrus, Volker C. Radeloff
2016, Biological Conservation (201) 327-335
Climate change is a major challenge for managers of protected areas world-wide, and managers need information about future climate conditions within protected areas. Prior studies of climate change effects in protected areas have largely focused on average climatic conditions. However, extreme weather may have stronger effects on wildlife populations and...
The international river interface cooperative: Public domain flow and morphodynamics software for education and applications
Jonathan M. Nelson, Yasuyuki Shimizu, Takaaki Abe, Kazutake Asahi, Mineyuki Gamou, Takuya Inoue, Toshiki Iwasaki, Takaharu Kakinuma, Satomi Kawamura, Ichiro Kimura, Tomoko Kyuka, Richard R. McDonald, Mohamed Nabi, Makoto Nakatsugawa, Francisco J. Simoes, Hiroshi Takebayashi, Yasunori Watanabe
2016, Advances in Water Resources (93) 62-74
This paper describes a new, public-domain interface for modeling flow, sediment transport and morphodynamics in rivers and other geophysical flows. The interface is named after the International River Interface Cooperative (iRIC), the group that constructed the interface and many of the current solvers included in iRIC. The interface is entirely...
Landscape effects of wildfire on permafrost distribution in interior Alaska derived from remote sensing
Dana R. N. Brown, M. Torre Jorgenson, Knut Kielland, David L. Verbyla, Anupma Prakash, Joshua C. Koch
2016, Remote Sensing (8) 1-22
Climate change coupled with an intensifying wildfire regime is becoming an important driver of permafrost loss and ecosystem change in the northern boreal forest. There is a growing need to understand the effects of fire on the spatial distribution of permafrost and its associated ecological consequences. We focus on the...
Carbon and energy fluxes in cropland ecosystems: a model-data comparison
E. Lokupitiya, A. Scott Denning, K. Schaefer, D. Ricciuto, R. Anderson, M. A. Arain, I. Baker, A. G. Barr, G. Chen, J.M. Chen, P. Ciais, D.R. Cook, M.C. Dietze, M. El Maayar, M. Fischer, R. Grant, D. Hollinger, C. Izaurralde, A. Jain, C.J. Kucharik, Z. Li, S. Liu, L. Li, R. Matamala, P. Peylin, D. Price, S. W. Running, A. Sahoo, M. Sprintsin, A.E. Suyker, H. Tian, Christina Tonitto, M.S. Torn, Hans Verbeeck, S.B. Verma, Y. Xue
2016, Biogeochemistry (128) 53-76
Croplands are highly productive ecosystems that contribute to land–atmosphere exchange of carbon, energy, and water during their short growing seasons. We evaluated and compared net ecosystem exchange (NEE), latent heat flux (LE), and sensible heat flux (H) simulated by a suite of ecosystem models at five agricultural eddy covariance flux...
Using the North American Breeding Bird Survey to assess broad-scale response of the continent's most imperiled avian community, grassland birds, to weather variability
Jessica Gorzo, Anna M. Pidgeon, Wayne E. Thogmartin, Andrew J. Allstadt, Volker C. Radeloff, Patricia J. Heglund, Stephen J. Vavrus
2016, The Condor (118) 502-512
Avian populations can respond dramatically to extreme weather such as droughts and heat waves, yet patterns of response to weather at broad scales remain largely unknown. Our goal was to evaluate annual variation in abundance of 14 grassland bird species breeding in the northern mixed-grass prairie in relation to annual...
Teleconnected ocean forcing of Western North American droughts and pluvials during the last millennium
Cody C. Routson, Connie A. Woodhouse, Jonathan T. Overpeck, Julio L. Betancourt, Nicholas P. McKay
2016, Quaternary Science Reviews (146) 238-250
Western North America (WNA) is rich in hydroclimate reconstructions, yet questions remain about the causes of decadal-to-multidecadal hydroclimate variability. Teleconnection patterns preserved in annually-resolved tree-ring reconstructed drought maps, and anomalies in a global network of proxy sea surface temperature (SST) reconstructions, were used to reassess the evidence linking ocean forcing...
Smokey comes of age: Unmanned aerial systems for fire management
Dirac Twidwell, Craig R. Allen, Carrick Detweiler, James Higgins, Christian Laney, Sebastian Elbaum
2016, Frontiers in Ecology and the Environment (14) 333-339
During the past century, fire management has focused on techniques both to protect human communities from catastrophic wildfire and to maintain fire-dependent ecological systems. However, despite a large and increasing allocation of resources and personnel to achieve these goals, fire management objectives at regional to global scales are not being...
The influence of vegetation cover on debris-flow density during an extreme rainfall in the northern Colorado Front Range
Francis K. Rengers, Luke McGuire, Jeffrey A. Coe, Jason W. Kean, Rex L. Baum, Dennis M. Staley, Jonathan W. Godt
2016, Geology (44) 823-826
We explored regional influences on debris-flow initiation throughout the Colorado Front Range (Colorado, USA) by exploiting a unique data set of more than 1100 debris flows that initiated during a 5 day rainstorm in 2013. Using geospatial data, we examined the influence of rain, hillslope angle, hillslope aspect, and vegetation...
Damage and recovery assessment of the Philippines' mangroves following Super Typhoon Haiyan
Jordan Long, Chandra Giri, Jurgene H. Primavera, Mandar Trivedi
2016, Marine Pollution Bulletin (109) 734-743
We quantified mangrove disturbance resulting from Super Typhoon Haiyan using a remote sensing approach. Mangrove areas were mapped prior to Haiyan using 30 m Landsat imagery and a supervised decision-tree classification. A time sequence of 250 m eMODIS data was used to monitor mangrove condition prior to, and following, Haiyan. Based on...
Insights into plant water uptake from xylem-water isotope measurements in two tropical catchments with contrasting moisture conditions
Jaivime Evaristo, Jeffrey J. McDonnell, Martha A. Scholl, L. Adrian Bruijnzeel, Kwok P. Chun
2016, Hydrological Processes (30) 3210-3227
Water transpired by trees has long been assumed to be sourced from the same subsurface water stocks that contribute to groundwater recharge and streamflow. However, recent investigations using dual water stable isotopes have shown an apparent ecohydrological separation between tree-transpired water and stream water. Here we present evidence for such...
Comparisons between vs30 and spectral response for 30 sites in Newcastle, Australia from collocated seismic cone penetrometer, active- and passive-source vs data
Theodora Volti, David Burbidge, Clive Collins, Michael W. Asten, Jackson K. Odum, William J. Stephenson, Chris Pascal, Josef Holzschuh
2016, Bulletin of the Seismological Society of America (106) 1690-1709
Although the time‐averaged shear‐wave velocity down to 30 m depth (VS30) can be a proxy for estimating earthquake ground‐motion amplification, significant controversy exists about its limitations when used as a single parameter for the prediction of amplification. To examine this question in absence of relevant strong‐motion records, we use a range...
Structured decision making for managing pneumonia epizootics in bighorn sheep
Sarah N. Sells, Michael S. Mitchell, Victoria L. Edwards, Justin A. Gude, Neil J. Anderson
2016, Journal of Wildlife Management (80) 957-969
Good decision-making is essential to conserving wildlife populations. Although there may be multiple ways to address a problem, perfect solutions rarely exist. Managers are therefore tasked with identifying decisions that will best achieve desired outcomes. Structured decision making (SDM) is a method of decision analysis used to identify the most...
Origin of the pulse-like signature of shallow long-period volcano seismicity
Bernard A. Chouet, Phillip B. Dawson
2016, Journal of Geophysical Research B: Solid Earth (121) 5931-5941
Short-duration, pulse-like long-period (LP) events are a characteristic type of seismicity accompanying eruptive activity at Mount Etna in Italy in 2004 and 2008 and at Turrialba Volcano in Costa Rica and Ubinas Volcano in Peru in 2009. We use the discrete wave number method to compute the free surface response...
Observations and modeling of fjord sedimentation during the 30 year retreat of Columbia Glacier, AK
Katherine B Love, Bernard Hallet, Thomas L. Pratt, Shad O’Neel
2016, Journal of Glaciology (62) 778-793
To explore links between glacier dynamics, sediment yields and the accumulation of glacial sediments in a temperate setting, we use extensive glaciological observations for Columbia Glacier, Alaska, and new oceanographic data from the fjord exposed during its retreat. High-resolution seismic data indicate that 3.2 × 108 m3 of...
Coseismic slip and early afterslip of the 2015 Illapel, Chile, earthquake: Implications for frictional heterogeneity and coastal uplift
William D. Barnhart, Jessica R. Murray, Richard W. Briggs, Francisco Gomez, Charles P. J. Miles, Jerry L. Svarc, Sebástian Riquelme, Bryan J. Stressler
2016, Journal of Geophysical Research B: Solid Earth (121) 6172-6191
Great subduction earthquakes are thought to rupture portions of the megathrust, where interseismic coupling is high and velocity-weakening frictional behavior is dominant, releasing elastic deformation accrued over a seismic cycle. Conversely, postseismic afterslip is assumed to occur primarily in regions of velocity-strengthening frictional characteristics that may correlate with lower interseismic...
Amplification of postwildfire peak flow by debris
Jason W. Kean, Luke McGuire, Francis K. Rengers, Joel B. Smith, Dennis M. Staley
2016, Geophysical Research Letters (43) 8545-8553
In burned steeplands, the peak depth and discharge of postwildfire runoff can substantially increase from the addition of debris. Yet methods to estimate the increase over water flow are lacking. We quantified the potential amplification of peak stage and discharge using video observations of postwildfire runoff, compiled data on postwildfire...
