Applications of genetic data to improve management and conservation of river fishes and their habitats
Kim T. Scribner, Winsor H. Lowe, Erin L. Landguth, Gordon Luikart, Dana M. Infante, Gary Whelan, Clint C. Muhlfeld
2015, Fisheries (41) 174-188
Environmental variation and landscape features affect ecological processes in fluvial systems; however, assessing effects at management-relevant temporal and spatial scales is challenging. Genetic data can be used with landscape models and traditional ecological assessment data to identify biodiversity hotspots, predict ecosystem responses to anthropogenic effects, and detect impairments to...
Using hierarchical Bayesian multi-species mixture models to estimate tandem hoop-net based habitat associations and detection probabilities of fishes in reservoirs
David R. Stewart, James M. Long
2015, Transactions of the American Fisheries Society (145) 450-461
Species distribution models are useful tools to evaluate habitat relationships of fishes. We used hierarchical Bayesian multispecies mixture models to evaluate the relationships of both detection and abundance with habitat of reservoir fishes caught using tandem hoop nets. A total of 7,212 fish from 12 species were captured, and the...
Spatial-temporal variation of low-frequency earthquake bursts near Parkfield, California
Chunquan Wu, Robert Guyer, David R. Shelly, D. Trugman, William Frank, Joan S. Gomberg, P. Johnson
2015, Geophysical Journal International (202) 914-919
Tectonic tremor (TT) and low-frequency earthquakes (LFEs) have been found in the deeper crust of various tectonic environments globally in the last decade. The spatial-temporal behaviour of LFEs provides insight into deep fault zone processes. In this study, we examine recurrence times from a 12-yr catalogue of 88 LFE families...
Hydroxide stabilization as a new tool for ballast disinfection: Efficacy of treatment on zooplankton
Christine M. Moffitt, Barnaby J. Watten, Amber Barenburg, Jeffrey W. Henquinet
2015, Management of Biological Invasions (6) 263-275
Effective and economical tools are needed for treating ship ballast to meet new regulatory requirements designed to reduce the introduction of invasive aquatic species from ship traffic. We tested the efficacy of hydroxide stabilization as a ballast disinfection tool in replicated, sequential field trials on board the M/V Ranger III...
The relationship between vessel traffic and noise levels received by killer whales (Orcinus orca)
Juliana Houghton, Marla M. Holt, Deborah A. Giles, M. Bradley Hanson, Candice K. Emmons, Jeffrey T. Hogan, Trevor A. Branch, Glenn R. VanBlaricom
2015, PLoS ONE (10) 1-20
Whale watching has become increasingly popular as an ecotourism activity around the globe and is beneficial for environmental education and local economies. Southern Resident killer whales (Orcinus orca) comprise an endangered population that is frequently observed by a large whale watching fleet in the inland waters of Washington state and...
Effectiveness of backpack electrofishing for removal of non-native fishes from a small warm-water stream
David L. Ward, Matthew W. O’neill, Cassie Ka’apu-Lyons
2015, Journal of the Arizona-Nevada Academy of Science (46) 37-41
Electrofishing is commonly used when renovating small streams to remove nuisance fishes but the likelihood of complete eradication of unwanted species, particularly warm-water fishes, is unknown. In October of 2008, we electrofished Bonita Creek, a small stream with base flows (<0.56 m3/s) in southern Arizona, and then treated the stream...
Predictive modelling of habitat use by marine predators with respect to the abundance and depth distribution of pelagic prey
Charlotte Boyd, Ramiro Castillo, George L. Hunt Jr., Andre E. Punt, Glenn R. VanBlaricom, Henri Weimerskirch, Sophie Bertrand
2015, Journal of Animal Ecology (85) 1575-1588
Understanding the ecological processes that underpin species distribution patterns is a fundamental goal in spatial ecology. However, developing predictive models of habitat use is challenging for species that forage in marine environments, as both predators and prey are often highly mobile and difficult to monitor. Consequently, few...
Flood-inundation maps for the Schoharie Creek at Prattsville, New York, 2014
Elizabeth A. Nystrom
2015, Scientific Investigations Report 2015-5190
Digital flood-inundation maps for a 2.6-mile reach of the Schoharie Creek at Prattsville, New York, were created by the U.S. Geological Survey (USGS) in cooperation with the New York State Department of Environmental Conservation. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site...
Trade-offs in osmoregulation and parallel shifts in molecular function follow ecological transitions to freshwater in the Alewife
Jonathan P. Velotta, Stephen D. McCormick, Eric T. Schultz
2015, Evolution (69) 2676-2688
Adaptation to freshwater may be expected to reduce performance in seawater because these environments represent opposing selective regimes. We tested for such a trade-off in populations of the Alewife (Alosa pseudoharengus). Alewives are ancestrally anadromous, and multiple populations have been independently restricted to freshwater (landlocked). We conducted salinity challenge experiments,...
State-space modeling to support management of brucellosis in the Yellowstone bison population
N. Thompson Hobbs, Chris Geremia, John Treanor, Rick Wallen, P.J. White, Mevin Hooten, Jack C. Rhyan
2015, Ecological Monographs (85) 525-556
The bison (Bison bison) of the Yellowstone ecosystem, USA, exemplify the difficulty of conserving large mammals that migrate across the boundaries of conservation areas. Bison are infected with brucellosis (Brucella abortus) and their seasonal movements can expose livestock to infection. Yellowstone National Park has embarked on a program of adaptive...
Seasonal cues of Arctic grayling movement in a small Arctic stream: the importance of surface water connectivity
Kurt C. Heim, Mark S. Wipfli, Matthew S. Whitman, Christopher D. Arp, Jeff Adams, Jeffrey A. Falke
2015, Environmental Biology of Fishes (99) 49-65
In Arctic ecosystems, freshwater fish migrate seasonally between productive shallow water habitats that freeze in winter and deep overwinter refuge in rivers and lakes. How these movements relate to seasonal hydrology is not well understood. We used passive integrated transponder tags and stream wide antennae to track 1035 Arctic grayling...
Toward a mechanistic understanding of human-induced rapid environmental change: A case study linking energy development, avian nest predation, and predators
Matthew G. Hethcoat, Anna D. Chalfoun
2015, Journal of Applied Ecology (52) 1492-1499
Demographic consequences of human-induced rapid environmental change (HIREC) have been widely documented for many populations. The mechanisms underlying such patterns, however, are rarely investigated and yet are critical to understand for effective conservation and management. We investigated the mechanisms underlying reduced avian nest survival with intensification of natural gas...
Incorporating microbial dormancy dynamics into soil decomposition models to improve quantification of soil carbon dynamics of northern temperate forests
Yujie He, Jinyan Yang, Qianlai Zhuang, Jennifer W. Harden, A. David McGuire, Yaling Liu, Gangsheng Wang, Lianhong Gu
2015, Journal of Geophysical Research G: Biogeosciences (120) 2596-2611
Soil carbon dynamics of terrestrial ecosystems play a significant role in the global carbon cycle. Microbial-based decomposition models have seen much growth recently for quantifying this role, yet dormancy as a common strategy used by microorganisms has not usually been represented and tested in these models against field observations. Here...
Population trends and survival of nesting green sea turtles Chelonia mydas on Aves Island, Venezuela
Marco A. Garcia-Cruz, Margarita Lampo, Claudia L. Penaloza, William L. Kendall, Genaro Sole, Kathryn M. Rodriguez-Clark
2015, Endangered Species Research (29) 103-116
Long-term demographic data are valuable for assessing the effect of anthropogenic impacts on endangered species and evaluating recovery programs. Using a 2-state open robust design model, we analyzed mark-recapture data from green turtles Chelonia mydas sighted between 1979 and 2009 on Aves Island, Venezuela, a rookery heavily impacted by human activities before...
Evaluation of a waistband for attaching external radiotransmitters to anurans
Luke A. Groff, Amber L. Pitt, Robert F. Baldwin, Aram J.K. Calhoun, Cyndy Loftin
2015, Wildlife Society Bulletin (39) 610-615
Radiotelemetry provides fine-scale temporal and spatial information about an individual's movements and habitat use; however, its use for monitoring amphibians has been restricted by transmitter mass and lack of suitable attachment techniques. We describe a novel waistband for attaching external radiotransmitters to anurans and evaluate the percentages of resulting abrasions,...
Depth of artificial Burrowing Owl burrows affects thermal suitability and occupancy
Christopher P. Nadeau, Courtney J. Conway, Nathan Rathbun
2015, Journal of Field Ornithology (86) 288-297
Many organizations have installed artificial burrows to help bolster local Burrowing Owl (Athene cunicularia) populations. However, occupancy probability and reproductive success in artificial burrows varies within and among burrow installations. We evaluated the possibility that depth below ground might explain differences in occupancy probability and reproductive success by affecting the...
Effects of geoduck (Panopea generosa) aquaculture on resident and transient macrofauna communities of Puget Sound, Washington, USA
P. Sean Mcdonald, Aaron W.E. Galloway, Kathleen C. McPeek, Glenn R. VanBlaricom
2015, Journal of Shellfish Research 189-202
In Washington state, commercial culture of geoducks (Panopea generosa) involves large-scale out-planting of juveniles to intertidal habitats, and installation of PVC tubes and netting to exclude predators and increase early survival. Structures associated with this nascent aquaculture method are examined to determine whether they affect patterns of use by resident...
Distribution, abundance, and habitat associations of a large bivalve (Panopea generosa) in a eutrophic, fjord estuary
P. Sean Mcdonald, Timothy E. Essington, Jonathan P. Davis, Aaron W.E. Galloway, Bethany C. Stevick, Gregory C. Jensen, Glenn R. VanBlaricom, David A. Armstrong
2015, Journal of Shellfish Research (34) 137-145
Marine bivalves are important ecosystem constituents and frequently support valuable fisheries. In many nearshore areas, human disturbance—including declining habitat and water quality—can affect the distribution and abundance of bivalve populations, and complicate ecosystem and fishery management assessments. Infaunal bivalves, in particular, are frequently cryptic and difficult to detect; thus, assessing...
Large divergence of satellite and Earth system model estimates of global terrestrial CO2 fertilization
W. Kolby Smith, Sasha C. Reed, Cory C. Cleveland, Ashley P Ballantyne, William R. L. Anderegg, William R. Wieder, Yi Y Liu, Steven W. Running
2015, Nature Climate Change (6) 306-310
Atmospheric mass balance analyses suggest that terrestrial carbon (C) storage is increasing, partially abating the atmospheric [CO2] growth rate, although the continued strength of this important ecosystem service remains uncertain. Some evidence suggests that these increases will persist owing to positive responses of vegetation growth (net primary productivity; NPP) to...
Floristic similarity, diversity and endemism as indicators of refugia characteristics and needs in the West
George P. Malanson, Dale L. Zimmerman, Daniel B. Fagre
2015, Biodiversity (16) 237-246
The floras of mountain ranges, and their similarity, beta diversity and endemism, are indicative of processes of community assembly; they are also the initial conditions for coming disassembly and reassembly in response to climate change. As such, these characteristics can inform thinking on refugia. The published floras or approximations for...
Past and future warming of a deep European lake (Lake Lugano): What are the climatic drivers?
Fabio Lepori, James Roberts
2015, Journal of Great Lakes Research (41) 973-981
We used four decades (1972–2013) of temperature data from Lake Lugano, Switzerland and Italy, to address the hypotheses that: [i] the lake has been warming; [ii] part of the warming reflects global trends and is independent from climatic oscillations and [iii] the lake will continue to warm until the end...
Influence of habitat and intrinsic characteristics on survival of neonatal pronghorn
Christopher N. Jacques, Jonathan A. Jenks, Troy W. Grovenburg, Robert W. Klaver
2015, PLoS ONE (10)
Increased understanding of the influence of habitat (e.g., composition, patch size) and intrinsic (e.g., age, birth mass) factors on survival of neonatal pronghorn (Antilocapra americana) is a prerequisite to successful management programs, particularly as they relate to population dynamics and the role of population models in adaptive species management. Nevertheless,...
How big of an effect do small dams have? Using geomorphological footprints to quantify spatial impact of low-head dams and identify patterns of across-dam variation
Jane S. Fencl, Martha E. Mather, Katie H. Costigan, Melinda D. Daniels
2015, PLoS ONE (10) 1-22
Longitudinal connectivity is a fundamental characteristic of rivers that can be disrupted by natural and anthropogenic processes. Dams are significant disruptions to streams. Over 2,000,000 low-head dams (<7.6 m high) fragment United States rivers. Despite potential adverse impacts of these ubiquitous disturbances, the spatial impacts of low-head dams on geomorphology...
Evaluation of capture techniques on lesser prairie-chicken trap injury and survival
Blake A. Grisham, Clint W. Boal, Natasia R. Mitchell, Trevor S. Gicklhorn, Philip K. Borsdorf, David A. Haukos, Charles Dixon
2015, Journal of Fish and Wildlife Management (6) 318-326
Ethical treatment of research animals is required under the Animal Welfare Act. This includes trapping methodologies that reduce unnecessary pain and duress. Traps used in research should optimize animal welfare conditions within the context of the proposed research study. Several trapping techniques are used in the study of lesser prairie-chickens,...
Bioelectrical impedance analysis: A new tool for assessing fish condition
Kyle J. Hartman, F. Joseph Margraf, Andrew W. Hafs, M. Keith Cox
2015, Fisheries (40) 590-600
Bioelectrical impedance analysis (BIA) is commonly used in human health and nutrition fields but has only recently been considered as a potential tool for assessing fish condition. Once BIA is calibrated, it estimates fat/moisture levels and energy content without the need to kill fish. Despite the promise held by BIA,...