Advanced hierarchical distance sampling
J. Andrew Royle
2016, Book chapter
In this chapter, we cover a number of important extensions of the basic hierarchical distance-sampling (HDS) framework from Chapter 8. First, we discuss the inclusion of “individual covariates,” such as group size, in the HDS model. This is important in many surveys where animals form natural groups that are the...
Status of pelagic prey fishes in Lake Michigan, 2015
David M. Warner, Randall M. Claramunt, Steven A. Farha, Dale Hanson, Timothy J. Desorcie, Timothy P. O’Brien
2016, Report, Compiled reports to the Great Lake Fishery Commission of the annual bottom trawl and acoustics surveys, 2015
Acoustic surveys were conducted in late summer/early fall during the years 1992-1996 and 2001-2015 to estimate pelagic prey fish biomass in Lake Michigan. Midwater trawling during the surveys as well as target strength provided a measure of species and size composition of the fish community for use in scaling acoustic...
Measuring the impact of invasive species on popular culture: a case study based on toy turtles from Japan
Jeffrey E. Lovich, Katsuya Yamamoto
2016, Humans and Nature (27) 1-11
The red-eared slider turtle (Trachemys scripta elegans) is native to portions of the United States of America (USA) and adjacent northeastern Mexico. The bright and colorful hatchlings have long been popular as pets globally but numerous individuals have been released into the wild establishing populations in areas well outside their...
Modeling abundance using multinomial N-mixture models
J. Andrew Royle
2016, Book chapter
Multinomial N-mixture models are a generalization of the binomial N-mixture models described in Chapter 6 to allow for more complex and informative sampling protocols beyond simple counts. Many commonly used protocols such as multiple observer sampling, removal sampling, and capture-recapture produce a multivariate count frequency that has a multinomial distribution...
A tube seepage meter for in situ measurement of seepage rate and groundwater sampling
John E. Solder, Troy E. Gilmore, David P. Genereux, D. Kip Solomon
2016, Groundwater (54) 588-595
We designed and evaluated a “tube seepage meter” for point measurements of vertical seepage rates (q), collecting groundwater samples, and estimating vertical hydraulic conductivity (K) in streambeds. Laboratory testing in artificial streambeds show that seepage rates from the tube seepage meter agreed well with expected values. Results of field testing...
Origin and identity of Fejervarya (Anura: Dicroglossidae) on Guam
Elijah Wostl, Eric N. Smith, Robert Reed
2016, Pacific Science (70) 233-241
We used morphological and molecular data to infer the identity and origin of frogs in the genus Fejervarya that have been introduced to the island of Guam. Mensural and meristic data were collected from 96 specimens from throughout their range on the island and a principal component analysis was used...
Terrestrial cosmogenic surface exposure dating of glacial and associated landforms in the Ruby Mountains-East Humboldt Range of central Nevada and along the northeastern flank of the Sierra Nevada
Steven G. Wesnousky, Richard W. Briggs, Marc W. Caffee, Rick J. Ryerson, Robert C. Finkel, Lewis A. Owen
2016, Geomorphology (268) 72-81
Deposits near Lamoille in the Ruby Mountains-East Humboldt Range of central Nevada and at Woodfords on the eastern edge of the Sierra Nevada each record two distinct glacial advances. We compare independent assessments of terrestrial cosmogenic nuclide (TCN) surface exposure ages for glacial deposits that we have determined to those...
The Bear River's history and diversion: Constraints, unsolved problems, and implications for the Lake Bonneville record: Chapter 2
Joel L. Pederson, Susanne U. Janecke, Marith C. Reheis, Darrell S. Kaufmann, Robert Q. Oaks Jr.
2016, Book chapter, Developments in earth surface processes
The shifting course of the Bear River has influenced the hydrologic balance of the Bonneville basin through time, including the magnitude of Lake Bonneville. This was first recognized by G.K. Gilbert and addressed in the early work of Robert Bright, who focused on the southeastern Idaho region of Gem...
Local environmental context conditions the impact of Russian olive in a heterogeneous riparian ecosystem
Graham M. Tuttle, Gabrielle L. Katz, Jonathan M. Friedman, Andrew P. Norton
2016, Invasive Plant Science and Management (9) 272-289
Local abiotic and biotic conditions can alter the strength of exotic species impacts. To better understand the effects of exotic species on invaded ecosystems and to prioritize management efforts, it is important that exotic species impacts are put in local environmental context. We studied how differences in plant community composition,...
Fidelity and persistence of Ring-billed (Larus delawarensis) and Herring (Larus argentatus) gulls to wintering sites
Daniel E. Clark, Kiana K. G. Koenen, Jillian J. Whitney, Kenneth G. MacKenzie, Stephen DeStefano
2016, Waterbirds (39) 220-234
While the breeding ecology of gulls (Laridae) has been well studied, their movements and spatial organization during the non-breeding season is poorly understood. The seasonal movements, winter-site fidelity, and site persistence of Ring-billed (Larus delawarensis) and Herring (L. argentatus) gulls to wintering areas were studied from 2008–2012. Satellite transmitters were...
An evaluation of behavior inferences from Bayesian state-space models: A case study with the Pacific walrus
William S. Beatty, Chadwick V. Jay, Anthony S. Fischbach
2016, Marine Mammal Science (32) 1299-1318
State-space models offer researchers an objective approach to modeling complex animal location data sets, and state-space model behavior classifications are often assumed to have a link to animal behavior. In this study, we evaluated the behavioral classification accuracy of a Bayesian state-space model in Pacific walruses using Argos satellite tags...
Golden-winged Warbler nest-site habitat selection: Chapter 7
Theron M. Terhune II, Kyle R. Aldinger, David A. Buehler, David J. Flaspohler, Jeffrey L. Larkin, John P. Loegering, Katie L. Percy, Amber M. Roth, Curtis G. Smalling, Petra Wood
2016, Book chapter, Golden-winged Warbler ecology, conservation, and habitat management (Studies in Avian Biology, volume 49)
Avian habitat selection occurs at multiple spatial scales to incorporate life history requirements. Breeding habitat of Golden-winged Warblers (Vermivora chrysoptera) is characterized by largely forested landscapes containing natural or anthropogenic disturbance elements that maintain forest patches in early stages of succession. Breeding habitat occurs in a variety of settings, including...
Pinedale glacial history of the upper Arkansas River valley: New moraine chronologies, modeling results, and geologic mapping
Avriel D. Schweinsberg, Jason P. Briner, Ralph R. Shroba, Joseph M. Licciardi, Eric M. Leonard, Keith A. Brugger, Charles M. Russell
2016, Book chapter, Unfolding the Geology of the West
This field-trip guide outlines the glacial history of the upper Arkansas River valley, Colorado, and builds on a previous GSA field trip to the area in 2010. The following will be presented: (1) new cosmogenic 10Be exposure ages of moraine boulders from the Pinedale and Bull Lake glaciations (Marine Isotope...
Relationship between porphyry systems, crustal preservation levels, and amount of exploration in magmatic belts of the Central Tethys Region
Lukas Zürcher, Jane M. Hammarstrom, John C. Mars, Stephen Ludington, Michael L. Zientek
2016, Book chapter, Tectonics and metallogeny of the Tethyan Orogenic Belt
Tectonic, geologic, geochemical, geochronologic, and ore deposit data from the U.S. Geological Survey-led assessment of 26 porphyry belts identified in the central Tethys region of Turkey, the Caucasus, Iran, western Pakistan, and southern Afghanistan relate porphyry mineralization to the...
Geomorphic evolution of the San Luis Basin and Rio Grande in southern Colorado and northern New Mexico
Chester A. Ruleman, Michael Machette, Ren A. Thompson, Dan M Miggins, Brent M Goehring, James B. Paces
2016, GSA Field Guides (44) 291-333
The San Luis Basin encompasses the largest structural and hydrologic basin of the Rio Grande rift. On this field trip, we will examine the timing of transition of the San Luis Basin from hydrologically closed, aggrading subbasins to a continuous fluvial system that eroded the basin, formed the Rio Grande...
Late quaternary changes in lakes, vegetation, and climate in the Bonneville Basin reconstructed from sediment cores from Great Salt Lake: Chapter 11
Robert S. Thompson, Charles G. Oviatt, Jeffrey S. Honke, John McGeehin
2016, Book chapter, Developments in earth surface processes: Lake Bonneville — A scientific update
Sediment cores from Great Salt Lake (GSL) provide the basis for reconstructing changes in lakes, vegetation, and climate for the last ~ 40 cal ka. Initially, the coring site was covered by a shallow saline lake and surrounded by Artemisia steppe or steppe-tundra under a cold and dry climate. As Lake Bonneville...
Awell-preserved conodont fauna from the Pennsylvanian Excello Shale of Iowa, U. S. A.
Merlynd K. Nestell, Bruce R. Wardlaw, John P. Pope
2016, Micropaleontology (62) 93-114
A superbly preserved discrete element conodont fauna has been recovered from carbonate concretions from the upper Desmoinesian (Pennsylvanian) Excello Shale at two localities in south-central Iowa. The multielement apparatuses for Gondolella wardlawi (new species), Idiognathodus acutus, Idioprioniodus conjunctus, and Neognathodus roundyi are reconstructed. Rare specimens of Idiognathodus tuberis (new species)...
Stratigraphic architecture of a fluvial-lacustrine basin-fill succession at Desolation Canyon, Uinta Basin, Utah: Reference to Walthers’ Law and implications for the petroleum industry
Grace L. Ford, David R. Pyles, Marieke Dechesne
2016, Mountain Geologist (53) 5-28
A continuous window into the fluvial-lacustrine basin-fill succession of the Uinta Basin is exposed along a 48-mile (77-kilometer) transect up the modern Green River from Three Fords to Sand Wash in Desolation Canyon, Utah. In ascending order the stratigraphic units are: 1) Flagstaff Limestone, 2) lower Wasatch member of...
Montane Forests
Malcolm P. North, Brandon M. Collins, Hugh D. Safford, Nathan L. Stephenson
2016, Book chapter, Ecosystems of California
This long-anticipated reference and sourcebook for California’s remarkable ecological abundance provides an integrated assessment of each major ecosystem type—its distribution, structure, function, and management. A comprehensive synthesis of our knowledge about this biologically diverse state, Ecosystems of California covers the state from oceans to mountaintops using multiple lenses: past and...
The swing of it: Hammock camping
Jeffrey L. Marion
2016, A.T. Journeys (Spring 2016) 12-18
Hammock camping is dramatically expanding along the Appalachian Trail and raising both questions and concerns among Trail land managers, club members, and backpackers. This article examines some of the advantages and disadvantages of hammock camping, including resource and social impacts. Some Leave No Trace hammock camping practices are included for...
Natural soil reservoirs for human pathogenic and fecal indicator bacteria
Maria L Boschiroli, Joseph Falkinham, Sabine Favre-Bonte, Sylvie Nazaret, Pascal Piveteau, Michael J. Sadowsky, Muruleedhara Byappanahalli, Pascal Delaquis, Alain Hartmann
2016, Book chapter, Manual of environmental microbiology
Soils receive inputs of human pathogenic and indicator bacteria through land application of animal manures or sewage sludge, and inputs by wildlife. Soil is an extremely heterogeneous substrate and contains meso- and macrofauna that may be reservoirs for bacteria of human health concern. The ability to detect and quantify bacteria...
Small mammal communities in eastern redcedar forest
Christopher J. Reddin, David G. Krementz
2016, American Midland Naturalist (175) 113-119
Eastern redcedar (Juniperus virginiana) is a fire-intolerant tree species that has encroached into grassland ecosystems throughout central and eastern North America. Many land managers are interested in removing eastern redcedar to restore native grasslands. We surveyed small mammals using mark-recapture methods in eastern redcedar forest, warm-season grassland, and oldfield habitats...
An overview of environmental impacts and reclamation efforts at the Iron Mountain mine, Shasta County, California
James A Jacobs, Stephen M. Testa, Charles N. Alpers, D. Kirk Nordstrom
2016, Book chapter, Applied geology in California
No abstract available ...
Physiological basis of climate change impacts on North American inland fishes
James E. Whitney, Robert K. Al-Chokhachy, David B. Bunnell, Colleen A. Caldwell, Steven J. Cooke, Erika J. Eliason, Mark W. Rogers, Abigail J. Lynch, Craig P. Paukert
2016, Fisheries (41) 332-345
Global climate change is altering freshwater ecosystems and affecting fish populations and communities. Underpinning changes in fish distribution and assemblage-level responses to climate change are individual-level physiological constraints. In this review, we synthesize the mechanistic effects of climate change on neuroendocrine, cardiorespiratory, immune, osmoregulatory, and reproductive systems of freshwater and...
Ore mineralogy and textural zonation in the world-class epithermal Waihi Vein System, Hauraki Goldfield
Jeffrey L. Mauk, Erin G Skinner, Sarah J Fyfe, Andrew H Menzies, Heather A. Lowers, Alan E. Koenig
2016, Book chapter, AusIMM Monograph 31: Mineral deposits of New Zealand—Exploration and research
The Waihi district in the Hauraki Goldfield of New Zealand contains adularia-sericite epithermal gold-silver veins that have produced more than 7.7 Moz gold. The outermost veins of the district (Martha, Favona, Moonlight, and Cowshed) contain abundant colloform, cherty, and black quartz fill textures, with minor crustiform and massive quartz. The...