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Population size and stopover duration estimation using mark–resight data and Bayesian analysis of a superpopulation model
James E. Lyons, William L. Kendall, J. Andrew Royle, Sarah J. Converse, Brad A. Andres, Joseph B. Buchanan
2016, Biometrics (72) 262-271
We present a novel formulation of a mark–recapture–resight model that allows estimation of population size, stopover duration, and arrival and departure schedules at migration areas. Estimation is based on encounter histories of uniquely marked individuals and relative counts of marked and unmarked animals. We use a Bayesian analysis of a...
DNA and dispersal models highlight constrained connectivity in a migratory marine megavertebrate
Eugenia Naro-Maciel, Kristen M. Hart, Rossana Cruciata, Nathan Freeman Putman
2016, Ecography (40) 586-597
Population structure and spatial distribution are fundamentally important fields within ecology, evolution, and conservation biology. To investigate pan-Atlantic connectivity of globally endangered green turtles (Chelonia mydas) from two National Parks in Florida, USA, we applied a multidisciplinary approach comparing genetic analysis and ocean circulation modeling. The Everglades (EP) is a...
Simulation of groundwater storage changes in the eastern Pasco Basin, Washington
Charles E. Heywood, Sue C. Kahle, Theresa D. Olsen, James D. Patterson, Erick Burns
2016, Scientific Investigations Report 2016-5026
The Miocene Columbia River Basalt Group and younger sedimentary deposits of lacustrine, fluvial, eolian, and cataclysmic-flood origins compose the aquifer system of the Pasco Basin in eastern Washington. Irrigation return flow and canal leakage from the Columbia Basin Project have caused groundwater levels to rise substantially in some areas,...
2016 one-year seismic hazard forecast for the Central and Eastern United States from induced and natural earthquakes
Mark D. Petersen, Charles S. Mueller, Morgan P. Moschetti, Susan M. Hoover, Andrea L. Llenos, William L. Ellsworth, Andrew J. Michael, Justin L. Rubinstein, Arthur F. McGarr, Kenneth S. Rukstales
2016, Open-File Report 2016-1035
The U.S. Geological Survey (USGS) has produced a 1-year seismic hazard forecast for 2016 for the Central and Eastern United States (CEUS) that includes contributions from both induced and natural earthquakes. The model assumes that earthquake rates calculated from several different time windows will remain relatively stationary and can be...
California State Waters Map Series — Offshore of Santa Cruz, California
Guy R. Cochrane, Peter Dartnell, Samuel Y. Johnson, Mercedes D. Erdey, Nadine E. Golden, H. Gary Greene, Bryan E. Dieter, Stephen R. Hartwell, Andrew C. Ritchie, David P. Finlayson, Charles A. Endris, Janet Watt, Clifton W. Davenport, Ray W. Sliter, Katherine L. Maier, Lisa M. Krigsman
Guy R. Cochrane, Susan A. Cochran, editor(s)
2016, Open-File Report 2016-1024
IntroductionIn 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation,...
California State Waters map series — Offshore of Aptos, California
Guy R. Cochrane, Samuel Y. Johnson, Peter Dartnell, H. Gary Greene, Mercedes D. Erdey, Bryan E. Dieter, Nadine E. Golden, Stephen R. Hartwell, Andrew C. Ritchie, Rikk G. Kvitek, Katherine L. Maier, Charles A. Endris, Clifton W. Davenport, Janet Watt, Ray W. Sliter, David P. Finlayson, Lisa M. Krigsman
Guy R. Cochrane, Susan A. Cochran, editor(s)
2016, Open-File Report 2016-1025
Introduction In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of...
Spatial genetic structure of Long-tailed Ducks (Clangula hyemalis) among Alaskan, Canadian, and Russian breeding populations
Robert E. Wilson, J. R. Gust, Margaret R. Petersen, Sandra L. Talbot
2016, Arctic (69) 65-78
Arctic ecosystems are changing at an unprecedented rate. How Arctic species are able to respond to such environmental change is partially dependent on the connections between local and broadly distributed populations. For species like the Long-tailed Duck (Clangula hyemalis), we have limited telemetry and band-recovery information from which to infer...
Quasi-extinction risk and population targets for the Eastern, migratory population of monarch butterflies (Danaus plexippus)
Brice X. Semmens, Darius J. Semmens, Wayne E. Thogmartin, Ruscena Wiederholt, Laura Lopez-Hoffman, James E. Diffendorfer, John M. Pleasants, Karen S. Oberhauser, Orley R. Taylor
2016, Scientific Reports (6)
The Eastern, migratory population of monarch butterflies (Danaus plexippus), an iconic North American insect, has declined by ~80% over the last decade. The monarch’s multi-generational migration between overwintering grounds in central Mexico and the summer breeding grounds in the northern U.S. and southern Canada is celebrated in all three countries...
Report A: Fish and habitat assessment in Rock Creek, Klickitat County, Washington, June 2013-December 2015
Jill M. Hardiman, Elaine Harvey
2016, Report, Rock Creek Fish and Habitat Assessment for Prioritization of Restoration and Protection Actions
The U.S. Geological Survey (USGS) and the Yakama Nation have collaborated in the Rock Creek subbasin, southeastern, Washington since 2009 to assess steelhead (Oncorynchus mykiss) populations and habitat conditions. Rock Creek, flows south to the Columbia River at river kilometer (rkm) 368. During 2015, a habitat survey was conducted, and...
Groundwater hydrology and estimation of horizontal groundwater flux from the Rio Grande at selected locations in Albuquerque, New Mexico, 2009–10
Dale R. Rankin, Gretchen P. Oelsner, Kurt J. McCoy, Goeff J.M. Moret, Jeffery A. Worthington, Kimberly M. Bandy-Baldwin
2016, Scientific Investigations Report 2016-5021
The Albuquerque area of New Mexico has two principal sources of water: (1) groundwater from the Santa Fe Group aquifer system, and (2) surface water from the Rio Grande. From 1960 to 2002, pumping from the Santa Fe Group aquifer system caused groundwater levels to decline more than 120 feet...
Non-invasive genetic sampling of Southern Mule Deer (Odocoileus hemionus fuliginatus) reveals limited movement across California State Route 67 in San Diego County
Anna Mitelberg, Amy G. Vandergast
2016, Western Wildlife (3) 8-18
—The Southern Mule Deer is a mobile but non-migratory large mammal found throughout southern California and is a covered species in the San Diego Multi-Species Conservation Plan. We assessed deer movement and population connectivity across California State Route 67 and two smaller roads in eastern San Diego County using non-invasive...
Estimating flood magnitude and frequency at gaged and ungaged sites on streams in Alaska and conterminous basins in Canada, based on data through water year 2012
Janet H. Curran, Nancy A. Barth, Andrea G. Veilleux, Robert T. Ourso
2016, Scientific Investigations Report 2016-5024
Estimates of the magnitude and frequency of floods are needed across Alaska for engineering design of transportation and water-conveyance structures, flood-insurance studies, flood-plain management, and other water-resource purposes. This report updates methods for estimating flood magnitude and frequency in Alaska and conterminous basins in Canada. Annual peak-flow data through water...
The Pliocene Model Intercomparison Project (PlioMIP) Phase 2: Scientific objectives and experimental design
Alan M. Haywood, Harry J. Dowsett, Aisling M. Dolan, David Rowley, Ayako Abe-Ouchi, Bette Otto-Bliesner, Mark A. Chandler, Stephen J. Hunter, Daniel J. Lunt, Matthew Pound, Ulrich Salzmann
2016, Climate of the Past (12) 663-675
The Pliocene Model Intercomparison Project (PlioMIP) is a co-ordinated international climate modelling initiative to study and understand climate and environments of the Late Pliocene, as well as their potential relevance in the context of future climate change. PlioMIP examines the consistency of model predictions in simulating Pliocene climate...
Potential effects of alterations to the hydrologic system on the distribution of salinity in the Biscayne aquifer in Broward County, Florida
Joseph D. Hughes, Dorothy F. Sifuentes, Jeremy T. White
2016, Scientific Investigations Report 2016-5022
To address concerns about the effects of water-resource management practices and rising sea level on saltwater intrusion, the U.S. Geological Survey in cooperation with the Broward County Environmental Planning and Community Resilience Division, initiated a study to examine causes of saltwater intrusion and predict the effects of future alterations to...
Hydrologic data and groundwater-flow simulations in the Brown Ditch Watershed, Indiana Dunes National Lakeshore, near Beverly Shores and Town of Pines, Indiana
David C. Lampe
2016, Scientific Investigations Report 2015-5141
The U.S. Geological Survey (USGS) collected data and simulated groundwater flow to increase understanding of the hydrology and the effects of drainage alterations on the water table in the vicinity of Great Marsh, near Beverly Shores and Town of Pines, Indiana. Prior land-management practices have modified drainage and caused changes...
Geologic assessment of undiscovered oil and gas resources in the Albian Clastic and Updip Albian Clastic Assessment Units, U.S. Gulf Coast Region
Matthew D. Merrill
2016, Open-File Report 2016-1026
U.S. Geological Survey National Oil and Gas Assessments (NOGA) of Albian aged clastic reservoirs in the U.S. Gulf Coast region indicate a relatively low prospectivity for undiscovered hydrocarbon resources due to high levels of past production and exploration. Evaluation of two assessment units (AUs), (1) the Albian Clastic AU 50490125,...
Estimation of a Trophic State Index for selected inland lakes in Michigan, 1999–2013
Lori M. Fuller, Richard S. Jodoin
2016, Scientific Investigations Report 2016-5023
A 15-year estimated Trophic State Index (eTSI) for Michigan inland lakes is available, and it spans seven datasets, each representing 1 to 3 years of data from 1999 to 2013. On average, 3,000 inland lake eTSI values are represented in each of the datasets by a process that relates field-measured...
Assessing the socioeconomic impact and value of open geospatial information
Francoise Pearlman, Jay Pearlman, Richard Bernknopf, Andrew Coote, Massimo Craglia, Lawrence Friedl, Jason Gallo, Henry Hertzfeld, Claire Jolly, Molly K. Macauley, Carl Shapiro, Alan Smart
2016, Open-File Report 2016-1036
The production and accessibility of geospatial information including Earth observation is changing greatly both technically and in terms of human participation. Advances in technology have changed the way that geospatial data are produced and accessed, resulting in more efficient processes and greater accessibility than ever before. Improved technology has also...
Effects of streamflows on stream-channel morphology in the eastern Niobrara National Scenic River, Nebraska, 1988–2010
Nathaniel J. Schaepe, Jason S. Alexander, Kiernan Folz-Donahue
2016, Scientific Investigations Report 2016-5004
The Niobrara River is an important and valuable economic and ecological resource in northern Nebraska that supports ecotourism, recreational boating, wildlife, fisheries, agriculture, and hydroelectric power. Because of its uniquely rich resources, a 122-kilometer reach of the Niobrara River was designated as a National Scenic River in 1991, which has...
The pace of past climate change vs. potential bird distributions and land use in the United States
Brooke L. Bateman, Anna M. Pidgeon, Volker C. Radeloff, Jeremy VanDerWal, Wayne E. Thogmartin, Stephen J. Vavrus, Patricia J. Heglund
2016, Global Change Biology (22) 1130-1144
Climate change may drastically alter patterns of species distributions and richness, but predicting future species patterns in occurrence is challenging. Significant shifts in distributions have already been observed, and understanding these recent changes can improve our understanding of potential future changes. We assessed how past climate change affected potential breeding...
Habitat selection by juvenile Mojave Desert tortoises
Brian D Todd, Brian J. Halstead, Lindsay P. Chiquoine, J. Mark Peaden, Kurt A. Buhlmann, Tracey D. Tuberville, Aleta Nafus
2016, Journal of Wildlife Management (80) 720-728
Growing pressure to develop public lands for renewable energy production places several protected species at increased risk of habitat loss. One example is the Mojave desert tortoise (Gopherus agassizii), a species often at the center of conflicts over public land development. For this species and others on public lands, a...
Groundwater quality, age, and susceptibility and vulnerability to nitrate contamination with linkages to land use and groundwater flow, Upper Black Squirrel Creek Basin, Colorado, 2013
Tristan P. Wellman, Michael G. Rupert
2016, Scientific Investigations Report 2016-5020
The Upper Black Squirrel Creek Basin is located about 25 kilometers east of Colorado Springs, Colorado. The primary aquifer is a productive section of unconsolidated deposits that overlies bedrock units of the Denver Basin and is a critical resource for local water needs, including irrigation, domestic, and commercial use. The...
Geologic map of the Sauvie Island quadrangle, Multnomah and Columbia Counties, Oregon, and Clark County, Washington
Russell C. Evarts, Jim O’Connor, Charles M. Cannon
2016, Scientific Investigations Map 3349
Introduction The Sauvie Island 7.5' quadrangle is situated in the Puget-Willamette Lowland northwest of downtown Portland, Oreg. This lowland, which extends from Puget Sound to west-central Oregon, is a complex structural and topographic trough between the Coast Range and the Cascade Range. Since late Eocene time, the Cascade Range has been...
First documented case of snake fungal disease in a free-ranging wild snake in Louisiana
Brad M. Glorioso, J. Hardin Waddle, David E. Green, Jeffrey M. Lorch
2016, Southeastern Naturalist (15) 4-6
Snake fungal disease (SFD) is a recently documented mycotic disease characterized by scabs or crusty scales, subcutaneous nodules, abnormal molting, cloudiness of the eyes (not associated with molting), and localized thickening or crusting of the skin. SFD has been documented in many species in the Eastern and Midwestern United States...
Play-level distributions of estimates of recovery factors for a miscible carbon dioxide enhanced oil recovery method used in oil reservoirs in the conterminous United States
Emil Attanasi, P.A. Freeman
2016, Open-File Report 2015-1239
In a U.S. Geological Survey (USGS) study, recovery-factor estimates were calculated by using a publicly available reservoir simulator (CO2 Prophet) to estimate how much oil might be recovered with the application of a miscible carbon dioxide (CO2) enhanced oil recovery (EOR) method to technically screened oil reservoirs located in onshore...