Microbial community composition and endolith colonization at an Arctic thermal spring are driven by calcite precipitation
Verena Starke, Julie Kirshtein, Marilyn L. Fogel, Andrew Steele
2013, Environmental Microbiology Reports (5) 648-659
Environmental conditions shape community composition. Arctic thermal springs provide an opportunity to study how environmental gradients can impose strong selective pressures on microbial communities and provide a continuum of niche opportunities. We use microscopic and molecular methods to conduct a survey of microbial community composition at Troll Springs on Svalbard,...
The occurrence of the rat lungworm, Angiostrongylus cantonensis, in nonindigenous snails in the Gulf of Mexico region of the United States
John L. Teem, Yvonne Qvarnstrom, Henry S. Bishop, Alexandre J. da Silva, Jacoby Carter, Jodi White-McLean, Trevor Smith
2013, Hawai'i Journal of Medicine & Public Health (72) 11-14
Nonindigenous apple snails, Pomacea maculata (formerly Pomacea insularum), are currently spreading rapidly through the southeastern United States. This mollusk serves as an intermediate host of the rat lungworm parasite (Angiostrongylus cantonensis), which can cause eosinophilic meningitis in humans who consume infected mollusks. A PCR-based detection assay was used to test...
How runoff begins (and ends): characterizing hydrologic response at the catchment scale
Benjamin B. Mirus, Keith Loague
2013, Water Resources Research (49) 2987-3006
Improved understanding of the complex dynamics associated with spatially and temporally variable runoff response is needed to better understand the hydrology component of interdisciplinary problems. The objective of this study was to quantitatively characterize the environmental controls on runoff generation for the range of different streamflow-generation mechanisms illustrated in the...
Characterisation of the Permafrost Carbon Pool
P. Kuhry, G. Grosse, J.W. Harden, G. Hugelius, C.D. Koven, C.-L. Ping, L. Schirrmeister, C. Tarnocai
2013, Permafrost and Periglacial Processes (24) 146-155
The current estimate of the soil organic carbon (SOC) pool in the northern permafrost region of 1672 Petagrams (Pg) C is much larger than previously reported and needs to be incorporated in global soil carbon (C) inventories. The Northern Circumpolar Soil Carbon Database (NCSCD), extended to include the range 0–300 cm,...
Linking anti-predator behaviour to prey demography reveals limited risk effects of an actively hunting large carnivore
Arthur D. Middleton, Matthew J. Kauffman, Douglas E. McWhirter, Michael D. Jimenez, Rachel C. Cook, John G. Cook, Shannon E. Albeke, Hall Sawyer, P.J. White
2013, Ecology Letters (16) 1023-1030
Ecological theory predicts that the diffuse risk cues generated by wide-ranging, active predators should induce prey behavioural responses but not major, population- or community-level consequences. We evaluated the non-consumptive effects (NCEs) of an active predator, the grey wolf (Canis lupus), by simultaneously tracking wolves and the behaviour, body fat, and...
Circulation exchange patterns in Sinclair Inlet, Washington
Marlene A. Noble, Kurt J. Rosenberger, Anthony J. Paulson, Anne L. Gartner
2013, Open-File Report 2013-1117
In 1994, the U.S. Geological Survey (USGS), in cooperation with the U.S. Navy, deployed three sets of moorings in Sinclair Inlet, which is a relatively small embayment on the western side of Puget Sound (fig. 1). This inlet is home to the Puget Sound Naval Shipyard. One purpose of the...
Tracking sedimentation from the historic A.D. 2011 Mississippi River flood in the deltaic wetlands of Louisiana, USA
Nicole S. Khan, Benjamin P. Horton, Karen L. McKee, Douglas Jerolmack, Federico Falcini, Mihaela D. Enache, Christopher H. Vane
2013, Geology (41) 391-394
Management and restoration of the Mississippi River deltaic plain (southern United States) and associated wetlands require a quantitative understanding of sediment delivery during large flood events, past and present. Here, we investigate the sedimentary fingerprint of the 2011 Mississippi River flood across the Louisiana coast (Atchafalaya Delta, Terrebonne, Barataria, and...
Direct estimation of diffuse gaseous emissions from coal fires: current methods and future directions
Mark A. Engle, Ricardo A. Olea, Jennifer M. K. O’Keefe, James C. Hower, Nicholas J. Geboy
2013, International Journal of Coal Geology (112) 164-172
Coal fires occur in nature spontaneously, contribute to increases in greenhouse gases, and emit atmospheric toxicants. Increasing interest in quantifying coal fire emissions has resulted in the adaptation and development of specialized approaches and adoption of numerical modeling techniques. Overview of these methods for direct estimation of diffuse gas emissions...
Rediscovering traditional vegetation management in preserves: trading experiences between cultures and continents
Beth A. Middleton
2013, Biological Conservation (158) 271-279
Land managers are grappling with massive changes in vegetation structure, particularly in protected areas formerly subjected to fire and grazing. The objective of this review was to compare notes on the historical and current management of ecosystems around the world (especially in wet to dry grasslands in the Americas, Australia,...
Catching air - those magnificent jumping Suwannee sturgeons
K. J. Sulak
2013, American Currents (38) 23-25
Disproportionation and thermochemical sulfate reduction reactions in S-H20-Ch4 and S-D2O-CH4 systems from 200 to 340 °C at elevated pressures
Shunda Yuan, I-Ming Chou, Robert A. Burruss
2013, Geochimica et Cosmochimica Acta (118) 263-275
Elemental sulfur, as a transient intermediate compound, by-product, or catalyst, plays significant roles in thermochemical sulfate reduction (TSR) reactions. However, the mechanisms of the reactions in S-H2O-hydrocarbons systems are not clear. To improve our understanding of reaction mechanisms, we conducted a series of experiments between 200 and 340 °C for...
Phast4Windows: A 3D graphical user interface for the reactive-transport simulator PHAST
Scott R. Charlton, David L. Parkhurst
2013, Groundwater (51) 623-628
Phast4Windows is a Windows® program for developing and running groundwater-flow and reactive-transport models with the PHAST simulator. This graphical user interface allows definition of grid-independent spatial distributions of model properties—the porous media properties, the initial head and chemistry conditions, boundary conditions, and locations of wells, rivers, drains, and accounting zones—and...
Defining groundwater age
T. Torgersen, R. Purtschert, F. M. Phillips, Niel Plummer, W. E. Sanford, A. Suckow
2013, Book chapter, Isotope Methods for Dating Old Groundwater
This book investigates applications of selected chemical and isotopic substances that can be used to recognize and interpret age information pertaining to ‘old’ groundwater (defined as water that was recharged on a timescale from approximately 1000 to more than 1 000 000 a). However, as discussed below, only estimates of...
Numerical flow models and their calibration using tracer based ages
W. Sanford
2013, Book chapter, Isotope Methods for Dating Old Groundwater
Any estimate of ‘age’ of a groundwater sample based on environmental tracers requires some form of geochemical model to interpret the tracer chemistry (chapter 3) and is, therefore, referred to in this chapter as a tracer model age. the tracer model age of a groundwater sample can be useful for...
Regional maps of subsurface geopressure gradients of the onshore and offshore Gulf of Mexico basin
Lauri A. Burke, Scott A. Kinney, Russell F. Dubiel, Janet K. Pitman
2013, Open-File Report 2013-1058
The U.S. Geological Survey created a comprehensive geopressure-gradient model of the regional pressure system spanning the onshore and offshore Gulf of Mexico basin, USA. This model was used to generate ten maps that included (1) five contour maps characterizing the depth to the surface defined by the first occurrence of...
Characterization and conceptualization of groundwater flow systems
Niel Plummer, W. E. Sanford, P. D. Glynn
2013, Book chapter, Isotope Methods for Dating Old Groundwater
This chapter discusses some of the fundamental concepts, data needs and approaches that aid in developing a general understanding of a groundwater system. Principles of the hydrological cycle are reviewed; the processes of recharge and discharge in aquifer systems; types of geological, hydrological and hydraulic data needed to describe the...
Radiocarbon dating in groundwater systems
Niel Plummer, P. D. Glynn
2013, Book chapter, Isotope Methods for Dating Old Groundwater
The radioactive isotope of carbon, radiocarbon (14C), was first produced artificially in 1940 by Martin Kamen and Sam Ruben, who bombarded graphite in a cyclotron at the Radiation Laboratory at Berkeley, CA, in an attempt to produce a radioactive isotope of carbon that could be used as a tracer in...
Interacting coastal based ecosystem services: recreation and water quality in Puget Sound, WA
Jason Kreitler, Michael Papenfus, Kristin Byrd, William Labiosa
2013, PLoS ONE (8)
Coastal recreation and water quality are major contributors to human well-being in coastal regions. They can also interact, creating opportunities for ecosystem based management, ecological restoration, and water quality improvement that can positively affect people and the environment. Yet the effect of environmental quality on human behavior is often poorly...
Automated quantitative micro-mineralogical characterization for environmental applications
Kathleen S. Smith, K.O. Hoal, Katherine Walton-Day, J.G. Stammer, K. Pietersen
2013, Conference Paper
Characterization of ore and waste-rock material using automated quantitative micro-mineralogical techniques (e.g., QEMSCAN® and MLA) has the potential to complement traditional acid-base accounting and humidity cell techniques when predicting acid generation and metal release. These characterization techniques, which most commonly are used for metallurgical, mineral-processing, and geometallurgical applications, can be...
The role of virulence for in vivo superinfection fitness of a vertebrate RNA virus
Alison M. Kell, Andrew R. Wargo, Gael Kurath
2013, Journal of Virology (87) 8145-8157
We have developed a novel, in vivo superinfection fitness assay to examine superinfection dynamics and the role of virulence in superinfection fitness. This assay involves controlled, sequential infections of a natural, vertebrate host, Oncorhynchus mykiss (rainbow trout), with variants of a co-evolved viral pathogen, infectious hematopoietic necrosis virus (IHNV). Intervals...
Colonization of steelhead in a natal stream after barrier removal
Dana E. Weigel, Patrick J. Connolly, Kyle D. Martens, Madison S. Powell
2013, Transactions of the American Fisheries Society (142) 920-930
Colonization of vacant habitats is an important process for supporting the long-term persistence of populations and species. We used a before–after experimental design to follow the process of colonization by steelhead Oncorhynchus mykiss (anadromous Rainbow Trout) at six monitoring sites in a natal stream, Beaver Creek, after the modification or...
Uranium quantification in semen by inductively coupled plasma mass spectrometry
Todor I. Todorov, John W. Ejnik, Gustavo S. Guandalini, Hanna Xu, Dennis Hoover, Larry W. Anderson, Katherine Squibb, Melissa A. McDiarmid, Jose A. Centeno
2013, Journal of Trace Elements in Medicine and Biology (27) 2-6
In this study we report uranium analysis for human semen samples. Uranium quantification was performed by inductively coupled plasma mass spectrometry. No additives, such as chymotrypsin or bovine serum albumin, were used for semen liquefaction, as they showed significant uranium content. For method validation we spiked 2 g aliquots of pooled...
Case study Middle Rio Grande Basin, New Mexico, USA
Niel Plummer, W. Sanford
2013, Book chapter, Isotope Methods for Dating Old Groundwater
Chemical and isotopic patterns in groundwater can record characteristics of water sources, flow directions, and groundwater-age information. This hydrochemical information can be useful in refining conceptualization of groundwater flow, in calibration of numerical models of groundwater flow, and in estimation of paleo and modern recharge rates. This case...
Inferring fault rheology from low-frequency earthquakes on the San Andreas
Nicholas M. Beeler, Amanda Thomas, Roland Bürgmann, David R. Shelly
2013, Journal of Geophysical Research (118) 5976-5990
Families of recurring low-frequency earthquakes (LFEs) within nonvolcanic tremor (NVT) on the San Andreas fault in central California show strong sensitivity to shear stress induced by the daily tidal cycle. LFEs occur at all levels of the tidal shear stress and are in phase with the very small, ~400 Pa, stress...
The role of airborne mineral dusts in human disease
Suzette A. Morman, Geoffrey S. Plumlee
2013, Aeolian Research (9) 203-212
Exposure to fine particulate matter (PM) is generally acknowledged to increase risk for human morbidity and mortality. However, particulate matter (PM) research has generally examined anthropogenic (industry and combustion by-products) sources with few studies considering contributions from geogenic PM (produced from the Earth by natural processes, e.g., volcanic ash, windborne...