Labeling poststorm coastal imagery for machine learning: Measurement of interrater agreement
Evan B. Goldstein, Daniel D. Buscombe, Eli D. Lazarus, Somya Mohanty, Shah N. Rafique, K A Anarde, Andrew D Ashton, Tomas Beuzen, Katherine A. Castagno, Nicholas Cohn, Matthew P. Conlin, Ashley Ellenson, Megan Gillen, Paige A. Hovenga, Jin-Si R. Over, Rose V. Palermo, Katherine Ratlif, Ian R Reeves, Lily H. Sanborn, Jessamin A. Straub, Luke A. Taylor, Elizabeth J. Wallace, Jonathan A. Warrick, Phillipe Alan Wernette, Hannah E Williams
2021, Earth and Space Science (8)
Classifying images using supervised machine learning (ML) relies on labeled training data—classes or text descriptions, for example, associated with each image. Data-driven models are only as good as the data used for training, and this points to the importance of high-quality labeled data for developing a ML...
Non-native poeciliids in hot water: The role of thermal springs in facilitating invasion of tropical species
Quenton M. Tuckett, Katelyn M. Lawson, Taylor N. Lipscomb, Jeffrey E. Hill, Wesley M. Daniel, Zachary A. Siders
2021, Hydrobiologia (848) 4731-4745
Livebearers in the family Poeciliidae are some of the most widely introduced fishes. Native poeciliid translocations within the U.S. are mostly due to deliberate stocking for mosquito control. Introductions of exotic poeciliids, those not native to the U.S., are more likely to be due to release...
Historical changes in plant water use and need in the continental United States
Michael T Terck, David Thoma, John E. Gross, Kirk R. Sherrill, Stefanie Kagone, Gabriel B. Senay
2021, PLoS ONE (16)
A robust method for characterizing the biophysical environment of terrestrial vegetation uses the relationship between Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD). These variables are usually estimated from a water balance model rather than measured directly and are often more representative of ecologically-significant changes than...
Precipitation-runoff processes in the Merced River Basin, Central California, with prospects for streamflow predictability, water years 1952–2013
Kathryn M. Koczot, John C. Risley, JoAnn M. Gronberg, John M. Donovan, Kelly R. McPherson
2021, Scientific Investigations Report 2020-5150
The U.S. Geological Survey, in cooperation with the California Department of Water Resources (DWR), has constructed a new spatially detailed Precipitation-Runoff Modeling System (PRMS) model for the Merced River Basin, California, which is a tributary of the San Joaquin River in California. Operated through an Object User Interface (OUI) with...
Incorporating uncertainty into groundwater salinity mapping using AEM data
Lyndsay B. Ball, Burke J. Minsley
2021, Conference Paper, First international meeting for applied geoscience & energy expanded abstracts
Airborne electromagnetic surveys provide spatially extensive resistivity information that can be useful for groundwater salinity mapping; however, the transformation from geophysical data to salinity interpretations carries uncertainty. We compare two quantitative approaches to salinity mapping recently applied to address water resource management objectives: the location of the depth to the...
LakeEnsemblR: An R package that facilitates ensemble modelling of lakes
Tadhg N. Moore, Jorrit P. Mesman, Robert Ladwig, Johannes Feldbauer, Freya Olsson, Rachel M. Pilla, Tom Shatwell, Jason J. Venkiteswaran, Austin D. Delany, Hilary Dugan, Kevin C. Rose, Jordan Read
2021, Environmental Modelling & Software (143)
Model ensembles have several benefits compared to single-model applications but are not frequently used within the lake modelling community. Setting up and running multiple lake models can be challenging and time consuming, despite the many similarities between the existing models (forcing data, hypsograph, etc.). Here we present an R package,...
Aquatic-terrestrial linkages control metabolism and carbon dynamics in a mid-sized, urban stream influenced by snowmelt
Ariel P. Reed, Edward G. Stets, Sheila F. Murphy, Emily Mullins
2021, Journal of Geophysical Research Biogeosciences (126)
Freshwater streams can exchange nutrients and carbon with the surrounding terrestrial environment through various mechanisms including physical erosion, flooding, leaf drop, and snowmelt. These aquatic-terrestrial interactions are crucial in carbon mobilization, transformation, ecosystem productivity, and have important implications for the role of freshwater ecosystems in the global carbon budget. We...
Seasonal and age-related variation in daily travel distances of California Condors
Jonathan C. Hall, Insu Hong, Sharon A. Poessel, Melissa A. Braham, Joseph Brandt, Joseph Burnett, Todd E. Katzner
2021, Journal of Raptor Research (55) 388-398
Despite a dramatic recovery from the brink of extinction, California Condors (Gymnogyps californianus) still face significant anthropogenic threats. Although condor movement patterns across large temporal scales are understood, less is known about their movements on a fine temporal scale. We used a trajectory-based analysis of GPS telemetry data gathered from...
Developing bare-earth digital elevation models from structure-from-motion data on barrier islands
Nicholas Enwright, Christine J. Kranenburg, Brett Patton, P. Soupy Dalyander, Jenna A. Brown, Sarai Piazza, Wyatt C Cheney
2021, ISPRS Journal of Photogrammetry and Remote Sensing (180) 269-282
Unoccupied aerial systems can collect aerial imagery that can be used to develop structure-from-motion products with a temporal resolution well-suited to monitoring dynamic barrier island environments. However, topographic data created using photogrammetric techniques such as structure-from-motion represent the surface elevation including the vegetation canopy. Additional processing is required for estimating bare-earth elevation, which...
Breeding waterbird populations have declined in south San Francisco Bay: An assessment over two decades
C. Alex Hartman, Joshua T. Ackerman, Carley Rose Schacter, Mark P. Herzog, Max Tarjan, Yiwei Wang, Cheryl Strong, Rachel Tertes, Nils Warnock
2021, San Francisco Estuary and Watershed Science (19)
In south San Francisco Bay, former salt ponds now managed as wildlife habitat support large populations of breeding waterbirds. In 2006, the South Bay Salt Pond Restoration Project began the process of converting 50% to 90% of these managed pond habitats into tidal marsh. We compared American Avocet (Recurvirostra americana)...
Hydrological control shift from river level to rainfall in the reactivated Guobu slope besides the Laxiwa hydropower station in China
Xuguo Shi, Xie Hu, Nicholas Sitar, Robert Kayen, Shengwen Qi, Houjun Jiang, Xudong Wang
2021, Remote Sensing of Environment (265)
Landslides are common geohazards associated with natural drivers such as precipitation, land degradation, toe erosion by rivers and wave attack, and ground shaking. On the other hand, human alterations such as inundation by water impoundment or rapid drawdown may also destabilize the surrounding slopes....
Using regional watershed data to assess water-quality impairment in the Pacific Drainages of the United States
Daniel R. Wise
2021, Scientific Investigations Report 2021-5087
Two datasets containing the first complete estimates of reach-scale nutrient, water use, dissolved oxygen, and pH conditions for the Pacific drainages of the United States were created to help inform water-quality management decisions in that region. The datasets were developed using easily obtainable watershed data, most of which have...
Semi-centennial of Landsat observations and pending Landsat 9 launch
Samuel N. Goward, Jeffery G. Masek, Thomas Loveland, John L. Dwyer, Darrel L. Williams, Terry Arvidson, Laura E.P. Rocchio, James R. Irons
2021, Photogrammetric Engineering and Remote Sensing (PE&RS) (87) 533-538
The first Landsat was placed in orbit on 23 July 1972, followed by a series of missions that have provided nearly continuous, two-satellite 8-day repeat image coverage of the Earth’s land areas for the last half-century. These observations have substantially enhanced our understanding of the Earth’s terrestrial dynamics, both as...
Demography of the Appalachian Spotted Skunk (Spilogale putorius putorius)
Andrew R. Butler, Andrew J. Edelman, Robin Y. Y. Eng, Stephen N. Harris, Colleen Olfenbuttel, Emily D. Thorne, W. Mark Ford, David S. Jachowski
Erin Hewett Ragheb, editor(s)
2021, Southeastern Naturalist (20) 95-109
Spilogale putorius (Eastern Spotted Skunk) is a small, secretive carnivore that has substantially declined throughout the eastern United States since the mid-1900s. To better understand the current status of Eastern Spotted Skunks, we studied survival and reproduction of the S. p. putorius (Appalachian Spotted Skunk) subspecies across 4 states in the central and...
An updated assessment of status and trend in the distribution of the Cascades frog (Rana cascadae) in Oregon, USA
Adam Duarte, Christopher Pearl, Brome McCreary, Jennifer Rowe, Michael J. Adams
2021, Herpetological Conservation and Biology (16) 361-373
Conservation efforts need reliable information concerning the status of a species and their trends to help identify which species are in most need of assistance. We completed a comparative evaluation of the occurrence of breeding for Cascades Frog (Rana cascadae), an amphibian that is being considered for federal protection under...
Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections
Karan Kakouei, B.M. Kraemer, O. Anneville, L. Carvalho, H. Feuchtmayr, Jennifer L. Graham, S. Higgins, F. Pomati, L.G. Rudstam, J.D. Stockwell, S.J. Thackeray, M. Vanni, R. Adrian
2021, Global Change Biology (27) 6409-6422
Land use and climate change are anticipated to affect phytoplankton of lakes worldwide. The effects will depend on the magnitude of projected land use and climate changes and lake sensitivity to these factors. We used random forests fit with long-term (1971–2016) phytoplankton and cyanobacteria abundance time...
Watershed and estuarine controls both influence plant community and tree growth changes in tidal freshwater forested wetlands along two U.S. mid-Atlantic rivers
Gregory E. Noe, Norman A Bourg, Ken Krauss, Jamie A. Duberstein, Cliff R. Hupp
2021, Forests (9)
The tidal freshwater zone near the estuarine head-of-tide is potentially sensitive to both sea-level rise and associated salinity increases as well as changing watershed inputs of freshwater and nutrients. We evaluated the vegetation response of tidal freshwater forested wetlands (TFFW) to changes in nontidal river versus estuarine...
Interagency Ecological Program long-term monitoring element review: Pilot approach and methods development (2020)
Jereme W. Gaeta, Samuel M. Bashevkin, Frederick V. Feyrer, Brock Huntsman, Brian Mahardja, Steven D Culberson, Michael P Beakes, Stephanie Fong, Stephen Louie
2021, Report
This report describes the first-year, pilot-phase of what is intended to be a larger, multiple-year review of all IEP core long-term monitoring elements (LTMEs). Here we hope to provide evidence that the review team arrangement and communication schedule was effective at developing a framework to objectively evaluate a suite of...
Historical hydrologic and geomorphic conditions on the Black River and selected tributaries, Arkansas and Missouri
Jessica Z. LeRoy, Richard J. Huizinga, David C. Heimann, Evan M. Lindroth, Henry F. Doyle
2021, Scientific Investigations Report 2021-5067
The Black River flows through southeast Missouri and northeast Arkansas to its confluence with the White River in Arkansas. The U.S. Army Corps of Engineers operates Clearwater Dam on the Black River and a series of dams in the White River Basin primarily for flood control. In this study, the...
GeoAI in the US Geological Survey for topographic mapping
E. Lynn Usery, Samantha T. Arundel, Ethan J. Shavers, Larry Stanislawski, Philip T. Thiem, Dalia E. Varanka
2021, Transactions in GIS (26) 25-40
Geospatial artificial intelligence (GeoAI) can be defined broadly as the application of artificial intelligence methods and techniques to geospatial data, processes, models, and applications. The application of these methods to topographic data and phenomena is a focus of research in the US Geological Survey (USGS)....
Groundwater, biodiversity, and the role of flow system scale
Allison R Aldous, Marshall W. Gannett
2021, Ecohydrology (14)
Groundwater-dependent ecosystems and species (GDEs) are found throughout watersheds at locations of groundwater discharge, yet not all GDEs are the same, nor are the groundwater systems supporting them. Groundwater moves along a variety of flow paths of different lengths and with different contributing areas, ranging from...
LiDAR and paleoseismology solve earthquake mystery in the Pacific Northwest, USA
Brian L. Sherrod, Richard J. Blakely, Craig S. Weaver
2021, Geophysical Research Letters (48)
One of the largest historical earthquakes in the U.S. Pacific Northwest occurred on December 15, 1872 near the south end of Lake Chelan. Lack of recognized surface deformation suggested that the earthquake occurred on a blind, perhaps deep, fault. New LiDAR data revealed a NW-side-up scarp along the north side...
Development of demographic models to analyze populations with multi-year data—Using Agassiz’s Desert Tortoise (Gopherus agassizii) as a case study
Kristin H. Berry, Julie L. Yee
2021, Open-File Report 2018-1094
We developed a model for analyzing multi-year demographic data for long-lived animals and used data from a population of Agassiz’s desert tortoise (Gopherus agassizii) at the Desert Tortoise Research Natural Area in the western Mojave Desert of California as a case study. The study area was 7.77 square kilometers and...
Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska
Andrew M. Ramey, Raymond Bucheit, Brian D. Uher-Koch, John Reed, M. Andreina Pacheco, Ananias Escalante, Joel Schmutz
2021, International Journal for Parasitology: Parasites and Wildlife (16) 103-112
Emperor Geese (Anser canagicus) are iconic waterfowl endemic to Alaska and adjacent areas of northeastern Russia that are considered to be near threatened by the International Union for Conservation. This species has been identified as harboring diverse viruses and parasites which have, at times, been associated with disease in other avian taxa....
Estimates of water use associated with continuous oil and gas development in the Permian Basin, Texas and New Mexico, 2010–19
Joshua F. Valder, Ryan R. McShane, Joanna N. Thamke, Jeremy S. McDowell, Grady P. Ball, Natalie A. Houston, Amy E. Galanter
2021, Scientific Investigations Report 2021-5090
In 2015, the U.S. Geological Survey started a topical study to quantify water use in areas of continuous oil and gas (COG) development. The first phase of the study was completed in 2019 and analyzed the Williston Basin. The second phase of the study analyzed the Permian Basin using the...