Identifying reliable indicators of fitness in polar bears
Karyn D. Rode, Todd C. Atwood, Gregory Thiemann, Michelle St. Martin, Ryan H. Wilson, George M. Durner, Eric V. Regehr, Sandra L. Talbot, Kevin Sage, Anthony M. Pagano, Kristin S. Simac
2020, PLoS ONE (15)
Animal structural body size and condition are often measured to evaluate individual health, identify responses to environmental change and food availability, and relate food availability to effects on reproduction and survival. A variety of condition metrics have been developed but relationships between these metrics and vital rates are...
Spatial grain of adaptation is much finer than ecoregional-scale common gardens reveal
Bill Davidson, Matthew J. Germino
2020, Ecology and Evolution (10) 9920-9931
Adaptive variation among plant populations must be known for effective conservation and restoration of imperiled species and predicting their responses to a changing climate. Common‐garden experiments, in which plants sourced from geographically distant populations are grown together such that genetic differences may be expressed, have provided...
Using density surface models to estimate spatio-temporal changes in population densities and trend
Richard J. Camp, David L Miller, Len Thomas, Steve T. Buckland, Steve J. Kendall
2020, Ecography (43) 1079-1089
Precise measures of population abundance and trend are needed for species conservation; these are most difficult to obtain for rare and rapidly changing populations. We compare uncertainty in densities estimated from spatio–temporal models with that from standard design‐based methods. Spatio–temporal models allow us to target priority areas where, and at...
Management of remnant tallgrass prairie by grazing or fire: Effects on plant communities and soil properties
Diane L. Larson, Daniel L. Hernández, Jennifer L. Larson, Julia B. Leone, Nora P. Pennarola
2020, Ecosphere (11)
Tallgrass prairie is a disturbance‐dependent ecosystem that has suffered steep declines in the midwestern United States. The necessity of disturbance, typically fire or grazing, presents challenges to managers who must apply them on increasingly small and fragmented parcels. The goal of this study was to compare...
Passive acoustic monitoring effectively detects Northern Spotted Owls and Barred Owls over a range of forest conditions
Leila S. Duchac, Damon B. Lesmeister, Katie M. Dugger, Zachary J. Ruff, Raymond J. Davis
2020, Condor (122)
Passive acoustic monitoring using autonomous recording units (ARUs) is a fast-growing area of wildlife research especially for rare, cryptic species that vocalize. Northern Spotted Owl (Strix occidentalis caurina) populations have been monitored since the mid-1980s using mark–recapture methods. To evaluate an alternative survey method, we used ARUs to detect calls...
Low oxygen: A (tough) way of life for Okavango fishes
Thea M. Edwards, Ineelo J. Mosie, Brandon C. Moore, Guy Lobjoit, Kelsie Schiavone, Robert E. Bachman, Mike Murray-Hudson
2020, PLoS ONE (15)
Botswana’s Okavango Delta is a World Heritage Site and biodiverse wilderness. In 2016–2018, following arrival of the annual flood of rainwater from Angola’s highlands, and using continuous oxygen logging, we documented profound aquatic hypoxia that persisted for 3.5 to 5 months in the river channel. Within these periods, dissolved oxygen...
The role of phosphorus and nitrogen on chlorophyll a: Evidence from hundreds of lakes
Zhongyao Liang, Patricia A. Soranno, Tyler Wagner
2020, Water Research (185)
The effect of nutrients on phytoplankton biomass in lakes continues to be a subject of debate by aquatic scientists. However, determining whether or not chlorophyll a (CHL) is limited by phosphorus (P) and/or nitrogen (N) is rarely considered using a probabilistic method in studies of hundreds of lakes across broad spatial extents....
Large-scale erosion driven by intertidal eelgrass loss in an estuarine environment
Ryan K. Walter, Jenifer K. O’Leary, Sean Vitousek, Mohsen Taherkhani, Carolyn Geraghty, Ann Kitajima
2020, Estuarine, Coastal and Shelf Science (243)
Seagrasses influence local hydrodynamics by inducing drag on the flow and dampening near-bed velocities and wave energy. When seagrasses are lost, near-bed currents and wave energy can increase, which enhances bottom shear stresses, destabilizes sediment, and promotes suspension and erosion. Though seagrasses are being lost rapidly globally, the magnitude of...
Influence of soil microbiota on Taxodium distichum seedling performance during extreme flooding events
Lorena Torres-Martinez, Mareli Sanchez-Julia, Elizabeth Kimbrough, Trey Hendrix, Miranda Hendrix, Richard H. Day, Ken W. Krauss, Sunshine A Van Bael
2020, Plant Ecology (221) 773-793
Plant associations with soil microbiota can modulate tree seedling growth and survival via mutualistic or antagonistic interactions. It is uncertain, however, whether soil microbiota influence seedling growth of coastal trees when exposed to extreme flooding regimes. We evaluated the role of soil microbes in promoting baldcypress (Taxodium distichum) seedling performance...
Rediscovery of the horseshoe shrimp Lightiella serendipita Jones, 1961 (Cephalocarida: Hutchinsoniellidae) in San Francisco Bay, California, USA, with a key to the worldwide species of Cephalocarida
Crystal Garcia, Isa Woo, D. Christopher Rogers, Alison M Flanagan, Susan E.W. De La Cruz
2020, Journal of Crustacean Biology (40) 600-606
Lightiella serendipitaJones, 1961 was first discovered in San Francisco Bay, California in 1953, but it had not been observed since 1988. In 2017, a total of 13 adult L. serendipita specimens were found as part of a study in central San Francisco Bay, nearly doubling the...
Breeding biology of the Mountain Wren-Babbler (Gypsophila crassus)
Morgan C. Slevin, Enroe E. Bin Soudi, Thomas E. Martin
2020, Wilson Journal of Ornithology (132) 124-133
Life history theory in ornithology has been mostly based on temperate birds in part because a relative paucity of biological data has been described for tropical species. Expanding our knowledge about life histories of tropical birds can help us to better understand global trends in...
The utility of zooarchaeological data to guide listing efforts for an imperiled mussel species (Bivalvia: Unionidae: Pleurobema riddellii)
Charles R. Randklev, Steve Wolverton, Nathan A. Johnson, Chase H. Smith, Traci DuBose, Clint Robertson, Julian Conley
2020, Conservation Science and Practice (2)
The status of species in freshwater systems shift over time due to natural and anthropogenic causes. Determining the magnitude and cause of these shifts requires a long-term perspective. This process is complicated when there are also questions about the taxonomic validity of a species. Addressing these issues is important because...
Pseudo-prospective evaluation of UCERF3-ETAS forecasts during the 2019 Ridgecrest sequence
William J. Savran, Maximillian J. Werner, W. Marzocchi, David A. Rhoades, David D. Jackson, Kevin R. Milner, Edward H. Field, Andrew J. Michael
2020, Bulletin of the Seismological Society of America (110) 1799-1817
The 2019 Ridgecrest sequence provides the first opportunity to evaluate Uniform California Earthquake Rupture Forecast v.3 with epidemic‐type aftershock sequences (UCERF3‐ETAS) in a pseudoprospective sense. For comparison, we include a version of the model without explicit faults more closely mimicking traditional ETAS models (UCERF3‐NoFaults). We evaluate the forecasts with new...
Characterization of the unconventional Tuscaloosa marine shale reservoir in southwestern Mississippi, USA: Insights from optical and SEM petrography
Celeste D. Lohr, Brett J. Valentine, Paul C. Hackley, Frank T. Dulong
2020, Marine and Petroleum Geology (121)
This study presents new optical petrography and electron microscopy data, interpreted in the context of previously published petrophysical, geochemical, and mineralogical data, to further characterize the Tuscaloosa marine shale (TMS) as an unconventional reservoir in southwestern Mississippi. The basal high resistivity zone has a higher proportion of Type II sedimentary...
An updated genetic marker for detection of Lake Sinai Virus and metagenetic applications
Deborah D. Iwanowicz, Judy Y. Wu-Smart, Tugce Olgun, Autumn H. Smart, Clint Otto, Dawn Lopez, Jay D. Evans, Robert S. Cornman
2020, PeerJ (8)
BackgroundLake Sinai Viruses (LSV) are common RNA viruses of honey bees (Apis mellifera) that frequently reach high abundance but are not linked to overt disease. LSVs are genetically heterogeneous and collectively widespread, but despite frequent detection in surveys, the ecological and geographic factors structuring their distribution in A. mellifera are not...
A GT-seq panel for walleye (Sander vitreus) provides important insights for efficient development and implementation of amplicon panels in non-model organisms
Matthew L. Bootsma, Kristen Gruenthal, Garrett McKinney, Levi Simmons, Loren Miller, Greg G. Sass, Wesley Larson
2020, Molecular Ecology Resources (20) 1706-1722
Targeted amplicon sequencing methods, such as genotyping-in-thousands by sequencing (GT-seq), facilitate rapid, accurate, and cost-effective analysis of hundreds of genetic loci in thousands of individuals. Development of GT-seq panels is nontrivial, but studies describing trade-offs associated with different steps of GT-seq panel development are rare. Here, we construct a dual-purpose...
Forage and habitat for pollinators in the northern Great Plains—Implications for U.S. Department of Agriculture conservation programs
Clint Otto, Autumn H. Smart, Robert S. Cornman, Michael Simanonok, Deborah D. Iwanowicz
2020, Open-File Report 2020-1037
Managed and wild pollinators are critical components of agricultural and natural systems. Despite the well-known value of insect pollinators to U.S. agriculture, Apis mellifera (Linnaeus, 1758; honey bees) and wild bees currently face numerous stressors that have resulted in declining health. These declines have engendered support for pollinator conservation efforts...
An international code comparison study on coupled thermal, hydrologic and geomechanical processes of natural gas hydrate-bearing sediments
M.D. White, T.J. Kneafsey, Y. Seol, William F. Waite, S. Uchida, J.S. Lin, E.M. Myshakin, X Gai, S. Gupta, M.T. Reagan, A.F. Queiruga, S. Kim
2020, Journal of Marine and Petroleum Geology (120)
Geologic reservoirs containing gas hydrate occur beneath permafrost environments and within marine continental slope sediments, representing a potentially vast natural gas source. Numerical simulators provide scientists and engineers with tools for understanding how production efficiency depends on the numerous, interdependent (coupled) processes associated with potential production strategies for these gas...
Segmentation and supercycles: A catalog of earthquake rupture patterns from the Sumatran Sunda Megathrust and other well-studied faults worldwide
Belle E. Philibosian, Aron J. Meltzner
2020, Quaternary Science Reviews (241)
After more than 100 years of earthquake research, earthquake forecasting, which relies on knowledge of past fault rupture patterns, has become the foundation for societal defense against seismic natural disasters. A concept that has come into focus more recently is that rupture segmentation and cyclicity can be complex, and that...
msocc: Fit and analyse computationally efficient multi‐scale occupancy models in R
Christian Stratton, Adam J. Sepulveda, Andrew B. Hoegh
2020, Methods in Ecology and Evolution (11) 1113-1120
Environmental DNA (eDNA) sampling is a promising tool for the detection of rare and cryptic taxa, such as aquatic pathogens, parasites and invasive species. Environmental DNA sampling workflows commonly rely on multi‐stage hierarchical sampling designs that induce complicated dependencies within the data. This complex dependence structure can be intuitively...
Urban stream syndrome and contaminant uptake in salamanders of Central Texas
Peter H. Diaz, Erik L. Orsak, Floyd W. Weckerly, Mike A. Montagne, David A. Alvarez
2020, Journal of Fish and Wildlife Management (11) 287-299
We studied the ecological health of springs experiencing varying levels of urban development to assess impacts to rare endemic salamanders (Eurycea spp.) of Central Texas. We evaluated measures of invertebrate species richness, water quality, and contaminant uptake by salamanders to determine how springs and their inhabitants were being affected by urban...
The abundance of Greater Sage-Grouse as a proxy for the abundance of sagebrush-associated songbirds in Wyoming, USA
Jason D. Carlisle, Anna D. Chalfoun
2020, Avian Conservation and Ecology (15)
Surrogate-species concepts are prevalent in animal conservation. Such strategies advocate for conservation by proxy, wherein one species is used to represent other taxa to obtain a conservation objective. The efficacy of such approaches has been rarely assessed empirically, but is predicated on concordance between the surrogate and sympatric taxa in...
Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival
Amanda R. Goldberg, Courtney J. Conway, David C. Tank, Kimberly R. Andrews, Digpal S. Gour, Lisette P. Waits
2020, Ecology and Evolution (10) 7627-7643
In herbivores, survival and reproduction are influenced by quality and quantity of forage, and hence, diet and foraging behavior are the foundation of an herbivore's life history strategy. Given the importance of diet to most herbivores, it is imperative that we know the species of plants they prefer, especially for...
Mate fidelity improves survival and breeding propensity of a long‐lived bird
Alan G. Leach, Thomas V. Riecke, James S. Sedinger, David H. Ward, Sean Boyd
2020, Journal of Animal Ecology (89) 2290-2299
Evolutionary and behavioural ecologists have long been interested in factors shaping the variation in mating behaviour observed in nature. Although much of the research on this topic has focused on the consequences of mate choice and mate change on annual reproductive success, studies of a potential positive link between...
Quantitative paleoflood hydrology
Gerardo Benito, Jim E. O'Connor
2020, Book chapter, Reference module in earth systems and environmental sciences
This chapter reviews the paleohydrologic techniques and approaches used to reconstruct the magnitude and frequency of past floods using geological evidence. Quantitative paleoflood hydrology typically leads to two phases of analysis: (1) documentation and assessment of flood physical evidence (paleostage indicators), and (2) relating identified flood evidence to flood discharge,...