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U.S. Geological Survey Community for Data Integration 2017 Workshop Proceedings
Leslie Hsu, Vivian B. Hutchison, Madison L. Langseth, Benjamin Wheeler
2018, Open-File Report 2018-1081
Executive SummaryThe U.S. Geological Survey (USGS) Community for Data Integration (CDI) Workshop was held May 16–19, 2017 at the Denver Federal Center. There were 183 in-person attendees and 35 virtual attendees over four days. The theme of the workshop was “Enabling Integrated Science,” with the purpose of bringing together the...
Real-time nowcasting of microbiological water quality at recreational beaches: A wavelet and artificial neural network-based hybrid modeling approach
Juan Zhang, Han Qiu, Xiaoyu Li, Jie Niu, Meredith B. Nevers, Xiaonong Hu, Mantha S. Phanikumar
2018, Environmental Science & Technology (52) 8446-8455
The number of beach closings caused by bacterial contamination has continued to rise in recent years, putting beachgoers at risk of exposure to contaminated water. Current approaches predict levels of indicator bacteria using regression models containing a number of explanatory variables. Data-based modeling approaches can supplement routine monitoring data and...
On the robustness of N‐mixture models
William A. Link, Matthew R. Schofield, Richard J. Barker, John R. Sauer
2018, Ecology (99) 1547-1551
N‐mixture models provide an appealing alternative to mark–recapture models, in that they allow for estimation of detection probability and population size from count data, without requiring that individual animals be identified. There is, however, a cost to using the N‐mixture models: inference is very sensitive to the model's assumptions. We consider...
Geochemical characterization and modeling of regional groundwater contributing to the Verde River, Arizona between Mormon Pocket and the USGS Clarkdale gage
Kimberly R. Beisner, W. Payton Gardner, Andrew G. Hunt
2018, Journal of Hydrology (564) 99-114
We use synoptic surveys of stream discharge, stable isotopes, and dissolved noble gases to identify the source of groundwater discharge to the Verde River in central Arizona. The Verde River more than doubles in discharge in Mormon Pocket over a 1.4 km distance that includes three discrete locations of...
Characterization of peak streamflows and flood inundation of selected areas in southeastern Texas and southwestern Louisiana from the August and September 2017 flood resulting from Hurricane Harvey
Kara M. Watson, Glenn R. Harwell, David S. Wallace, Toby L. Welborn, Victoria G. Stengel, Jeremy S. McDowell
2018, Scientific Investigations Report 2018-5070
Hurricane Harvey made landfall near Rockport, Texas, on August 25, 2017, as a Category 4 hurricane with wind gusts exceeding 150 miles per hour. As Harvey moved inland, the forward motion of the storm slowed down and produced tremendous rainfall amounts over southeastern Texas, with 8-day rainfall amounts exceeding 60...
Using geologic structures to constrain constitutive laws not accessible in the laboratory
Johanna Nevitt, Jessica M. Warren, Kathryn M. Kumamoto, David D. Pollard
2018, Journal of Structural Geology (125) 55-63
In this essay, we explore a central problem of structural geology today, and in the foreseeable future, which is the determination of constitutive laws governing rock deformation to produce geologic structures. Although laboratory experiments provide much needed data and insights about constitutive laws, these experiments cannot cover the range of conditions and...
Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015
Liam N. Schenk, Marc A. Stewart, Sara L. Caldwell Eldridge
2018, Scientific Investigations Report 2018-5075
The U.S. Geological Survey and Bureau of Reclamation collected water-quality data from March 2012 to March 2015 at locations in the Lost River and Klamath River Basins, Oregon, in an effort to characterize water quality and compute a nutrient budget for the Bureau of Reclamation Klamath Reclamation Project. The study...
Water-quality conditions with an emphasis on cyanobacteria and associated toxins and taste-and-odor compounds in the Kansas River, Kansas, July 2012 through September 2016
Jennifer L. Graham, Guy M. Foster, Thomas J. Williams, Matthew D. Mahoney, Madison R. May, Keith A. Loftin
2018, Scientific Investigations Report 2018-5089
Cyanobacteria cause a multitude of water-quality concerns, including the potential to produce toxins and taste-and-odor compounds that may cause substantial economic and public health concerns, and are of particular interest in lakes, reservoirs, and rivers that are used for drinking-water supply. Extensive cyanobacterial blooms typically do not develop in the...
Projected 21st century coastal flooding in the Southern California Bight. Part 2: Tools for assessing climate change-driven coastal hazards and socio-economic impacts
Li H. Erikson, Patrick L. Barnard, Andrea C. O'Neill, Nathan J. Wood, Jeanne M. Jones, Juliette Finzi Hart, Sean Vitousek, Patrick W. Limber, Maya Hayden, Michael Fitzgibbon, Jessica Lovering, Amy C. Foxgrover
2018, Journal of Marine Science and Engineering (6) 1-19
This paper is the second of two that describes the Coastal Storm Modeling System (CoSMoS) approach for quantifying physical hazards and socio-economic hazard exposure in coastal zones affected by sea-level rise and changing coastal storms. The modelling approach, presented in Part 1, downscales atmospheric global-scale projections to local scale coastal...
Environmental controls, emergent scaling, and predictions of greenhouse gas (GHG) fluxes in coastal salt marshes
Omar I. Abdul-Aziz, Khandker S. Ishitaq, Jianwu Tang, Serena Moseman-Valtierra, Kevin D. Kroeger, Meagan Gonneea Eagle, Jordan Mora, Kate Morkeski
2018, Journal of Geophysical Research G: Biogeosciences (123) 2234-2256
Coastal salt marshes play an important role in mitigating global warming by removing atmospheric carbon at a high rate. We investigated the environmental controls and emergent scaling of major greenhouse gas (GHG) fluxes such as carbon dioxide (CO2) and methane (CH4) in coastal salt marshes by conducting data analytics and...
Advances in sensitivity analysis of uncertainty to changes in sampling density when modeling spatially correlated attributes
Ricardo A. Olea
2018, Book chapter
A comparative analysis of distance methods, kriging and stochastic simulation is conducted for evaluating their capabilities for predicting fluctuations in uncertainty due to changes in spatially correlated samples. It is concluded that distance methods lack the most basic capabilities to assess reliability despite their wide acceptance. In contrast, kriging and...
Applying high-resolution imagery to evaluate restoration-induced changes in stream condition, Missouri River Headwaters Basin, Montana
Melanie K. Vanderhoof, Clifton Burt
2018, Remote Sensing (10) 1-28
Degradation of streams and associated riparian habitat across the Missouri River Headwaters Basin has motivated several stream restoration projects across the watershed. Many of these projects install a series of beaver dam analogues (BDAs) to aggrade incised streams, elevate local water tables, and create natural surface water storage by reconnecting...
Spatial spectroscopic models for remote exploration
David R. Thompson, Alberto Candela, David Wettergreen, E. Noe Dobrea, Gregg A. Swayze, Roger N Clark, Rebecca Greenberger
2018, Astrobiology (18) 934-954
Ancient hydrothermal systems are a high-priority target for a future Mars sample return mission because they contain energy sources for microbes and can preserve organic materials (Farmer, 2000; MEPAG Next Decade Science Analysis Group, <a id="B36R" class="tab-link" href="https://www.liebertpub.com/doi/10.1089/ast.2017.1782#B36" data-tab="pane-pcw-references"...
Animal movement models for migratory individuals and groups
Mevin Hooten, Henry R. Scharf, Trevor J. Hefley, Aaron T. Pearse, Mitch D. Weegman
2018, Methods in Ecology and Evolution (9) 1692-1705
Animals often exhibit changes in their behaviour during migration. Telemetry data provide a way to observe geographic position of animals over time, but not necessarily changes in the dynamics of the movement process. Continuous‐time models allow for statistical predictions of the trajectory in the presence of measurement error and...
Landbird population trends in mountain and historical parks of the North Coast and Cascades Network: 2005–2016 synthesis
Chris Ray, James F. Saracco, Mandy Holmgren, Robert L. Wilkerson, Rodney B. Siegel, Kurt J. Jenkins, Jason I. Ransom, Patricia J. Happe, John R. Boetsch, Mark H. Huff
2018, Natural Resource Report NPS/NCCN/NRR—2018/1673
Long-term monitoring of landbird populations within the National Park Service (NPS) North Coast and Cascades Inventory and Monitoring Network (NCCN) began in 2005, with the goal of detecting trends to inform the conservation and management of landbirds and their habitats. Here we use 2005–2016 data from over 3500 point-count stations...
Simulation of less‐mobile porosity dynamics in contrasting sediment water interface porous media
Farzaneh MahmoodPoor Dehkordy, Martin A. Briggs, Frederick D. Day-Lewis, Amvrossios C. Bagtzoglou
2018, Hydrological Processes (32) 2030-2043
Considering heterogeneity in porous media pore size and connectivity is essential to predicting reactive solute transport across interfaces. However, exchange with less‐mobile porosity is rarely considered in surface water/groundwater recharge studies. Previous research indicates that a combination of pore‐fluid sampling and geoelectrical measurements can be used to quantify less‐mobile porosity...
Understanding and distinguishing reflectance measurements of solid bitumen and vitrinite using hydrous pyrolysis: Implications to petroleum assessment
Paul C. Hackley, Michael Lewan
2018, AAPG Bulletin (102) 1119-1140
Solid bitumen is a common organic component of thermally mature shales and typically is identified by embayment against euhedral mineral terminations and by groundmass textures. However, because these textures are not always present, solid bitumen can be easily misidentified as vitrinite. Hydrous-pyrolysis experiments (72 hr, 300°C–360°C) on shale and...
An evaluation of the toxicity of potassium chloride, active compound in the molluscicide potash, on salmonid fish and their forage base
Christine L. Densmore, Luke R. Iwanowicz, Anne P. Henderson, Vicki S. Blazer, Baileigh M. Reed-Grimmett, Lakyn R. Sanders
2018, Open-File Report 2018-1080
Potash, with the active ingredient potassium chloride (KCl) is a chemical that is currently being evaluated for potential use as a molluscicide to combat invasive zebra mussels and quagga mussels in Western United States waters. Although data available for other freshwater fishes indicate that recommended treatment levels of potash as...
Climate and plant controls on soil organic matter in coastal wetlands
Michael J. Osland, Christopher A. Gabler, James B. Grace, Richard H. Day, Meagan L. McCoy, Jennie L. McLeod, Andrew S. From, Nicholas M. Enwright, Laura C. Feher, Camille L. Stagg, Stephen B. Hartley
2018, Global Change Biology (24) 5361-5379
Coastal wetlands are among the most productive and carbon‐rich ecosystems on Earth. Long‐term carbon storage in coastal wetlands occurs primarily belowground as soil organic matter (SOM). In addition to serving as a carbon sink, SOM influences wetland ecosystem structure, function, and stability. To anticipate and mitigate the effects of climate...
External quality assurance project report for the National Atmospheric Deposition Program’s National Trends Network and Mercury Deposition Network, 2015–16
Gregory A. Wetherbee, RoseAnn Martin
2018, Scientific Investigations Report 2018-5034
The U.S. Geological Survey Precipitation Chemistry Quality Assurance project operated five distinct programs to provide external quality assurance monitoring for the National Atmospheric Deposition Program’s (NADP) National Trends Network and Mercury Deposition Network during 2015–16. The National Trends Network programs include (1) a field audit program to evaluate sample contamination...
Two-species occupancy modeling accounting for species misidentification and nondetection
Thierry Chambert, Evan H. Campbell Grant, David A. W. Miller, James D. Nichols, Kevin P. Mulder, Adrianne B. Brand
2018, Methods in Ecology and Evolution (9) 1468-1477
In occupancy studies, species misidentification can lead to false‐positive detections, which can cause severe estimator biases. Currently, all models that account for false‐positive errors only consider omnibus sources of false detections and are limited to single‐species occupancy.However, false detections for a given species often occur because of the misidentification...
Quantifying the visual-sensory landscape qualities that contribute to cultural ecosystem services using social media and LiDAR
Derek B. Van Berkel, Payam Tabrizian, Monica Dorning, Lindsey S. Smart, Doug Newcomb, Megan Mehaffey, Anne Neale, Ross K. Meentemeyer
2018, Ecosystem Services (31) 326-335
Landscapes are increasingly recognized for providing valuable cultural ecosystem services with numer- ous non-material benefits by serving as places of rest, relaxation, and inspiration that ultimately improve overall mental health and physical well-being. Maintaining and enhancing these valuable benefits through targeted management and conservation measures requires understanding the spatial and...
Temporal and spatial variation in pharmaceutical concentrations in an urban river system
Emily E. Burns, Laura J. Carter, Dana W. Kolpin, Jane Thomas-Oates, Alistair B.A. Boxall
2018, Water Research (137) 72-85
Many studies have quantified pharmaceuticals in the environment, few however, have incorporated detailed temporal and spatial variability due to associated costs in terms of time and materials. Here, we target 33 physico-chemically diverse pharmaceuticals in a spatiotemporal exposure study into the occurrence of pharmaceuticals in the wastewater system and the...
Application of a luminescence‐based sediment transport model
Harrison J. Gray, Gregory E. Tucker, Shannon A. Mahan
2018, Geophysical Research Letters (45) 6071-6080
Quantifying the transport history of sand is a challenging but important goal in geomorphology. In this paper, we take a simple idea that luminescence is bleached during transport and regenerates during storage, and use this as a basis to re‐envision luminescence as a sediment tracer. We apply a mathematical model...