Evaluating legacy effects of hyperabundant white-tailed deer (Odocoileus virginianus) in forested stands of Harriman and Bear Mountain State Parks, New York
Chellby R. Kilheffer, H. Brian Underwood, Donald J. Leopold, Rachel Guerrieri
2019, Open-File Report 2019-1116
Executive SummaryWhite-tailed deer (Odocoileus virginianus) are among the most impactful herbivores in the eastern United States. Legacy forest effects, those accrued from intense herbivory over time, manifest as low seedling regeneration, high cover of plant species that are infrequently browsed by deer, presence or expansion of nonnative or invasive plant...
Sequence analysis and acoustic tracking individual lake sturgeon identifies multiple patterns of river-lake habitat use
Scott F. Colborne, Darryl W. Hondorp, Christopher Holbrook, Michael R. Lowe, James C. Boase, Justin A. Chiotti, Todd C. Wills, Edward F. Roseman, Charles C. Krueger
2019, Ecosphere (10)
Understanding the spatial ecology of sturgeon (Acipenseridae) has proven to be a challenge due to the life history characteristics of these fish, especially their long life span, intermittent spawning, and long‐distance migrations. Within the Huron‐Erie Corridor (HEC) of the Laurentian Great Lakes, habitat use of 247 lake...
Geochemistry and geophysics of iron oxide-apatite deposits and associated waste piles with implications for potential rare earth element resources from ore and historic mine waste in the eastern Adirondack Highlands, New York, USA
Ryan D. Taylor, Anjana K. Shah, Gregory J. Walsh, Cliff D. Taylor
2019, Economic Geology (114) 1569-1598
The iron oxide-apatite (IOA) deposits of the eastern Adirondack Highlands, New York, are historical high-grade magnetite mines that contain variable concentrations of rare earth element (REE)-bearing apatite crystals. The majority of the deposits are hosted within sodically altered Lyon Mountain granite gneiss, although some deposits occur within paragneiss,...
Petrology of the 2016–2017 eruption of Bogoslof Island
Matthew W. Loewen, Pavel Izbekof, Jamshid Moshrefzadeh, Michelle L. Coombs, Jessica Larsen, Nathan Graham, Michelle Harbin, Christopher F. Waythomas, Kristi L. Wallace
2019, Bulletin of Volcanology (81)
The 2016–2017 eruption of Bogoslof primarily produced crystal-rich amphibole basalts. The dominant juvenile tephra were highly microlitic with diktytaxitic vesicles, and amphiboles had large reaction rims. Both observations support a magma history of slow ascent and/or shallow stalling prior to eruption. Plagioclase-amphibole-clinopyroxene mineralogy are also suggestive of shallow magma crystallization....
Accumulating evidence in ecology: Once is not enough
James D. Nichols, William Kendall, G.Scott Boomer
2019, Ecology and Evolution (9) 13991-14004
Many published studies in ecological science are viewed as stand-alone investigations that purport to provide new insights into how ecological systems behave based on single analyses. But it is rare for results of single studies to provide definitive results, as evidenced in current discussions of the “reproducibility crisis” in science....
The power, potential, and pitfalls of open access biodiversity data in range size assessments: Lessons from the fishes
Abigail Benson
2019, Ecological Indicators (110)
Geographic rarity is a driver of a species’ intrinsic risk of extinction. It encompasses multiple key components including range size, which is one of the most commonly measured estimates of geographic rarity. Range size estimates are often used to prioritize conservation efforts when there are multiple candidate species, because data...
A statistical forecasting approach to metapopulation viability analysis
Paige E. Howell, Blake R. Hossack, Erin L. Muths, Brent Sigafus, A Chenevert-Steffler, Richard B. Chandler
2019, Ecological Applications (30)
Conservation of at‐risk species is aided by reliable forecasts of the consequences of environmental change and management actions on population viability. Forecasts from conventional population viability analysis (PVA) are made using a two‐step procedure in which parameters are estimated, or elicited from expert opinion, and then...
Protracted multipulse emplacement of a post-resurgent pluton: The case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)
Filip Tomek, Amy K. Gilmer, M. S. Petronis, Peter W. Lipman, M. S. Foucher
2019, Geochemistry, Geophysics, Geosystems (20) 5225-5250
Many eroded calderas expose associated postcollapse plutons, but detailed fieldwork‐supported studies have rarely focused on the internal structure that can contribute to understanding of emplacement dynamics. The Alamosa River monzonite pluton is a postcollapse intrusion at the Platoro caldera complex that erupted six large ignimbrites between 30.2 and 28.8 Ma in...
Riverscape correlates for distribution of threatened spotfin chub Erimonax monachus in the Tennessee River Basin, USA
Joshuah S. Perkin, W. Keith Gibbs, Josey Lee Ridgway, S. Bradford Cook
2019, Endangered Species Research (40) 91-105
Globally, aquatic biodiversity is imperiled at an increasing rate, especially in diversity hotspots such as the southeastern USA. The spotfin chub Erimonax monachus is a federally threatened minnow with a disjunct distribution resulting from numerous impoundments on the Tennessee River and its tributaries in the heart of the southeastern USA. Recovery actions...
Plant and insect herbivore community variation across the Paleocene–Eocene boundary in the Hanna Basin, southeastern Wyoming
Lauren E Schmidt, Regan E Dunn, Jason J Mercer, Marieke Dechesne, Ellen D Currano
2019, PeerJ
Ecosystem function and stability are highly affected by internal and external stressors. Utilizing paleobotanical data gives insight into the evolutionary processes an ecosystem undergoes across long periods of time, allowing for a more complete understanding of how plant and insect herbivore communities are affected by ecosystem imbalance. To study how...
Dynamically triggered changes of plate interface coupling in Southern Cascadia
Kathryn Z. Materna, Noel Bartlow, Aaron Wech, Charles Williams, Roland Burgmann
2019, Geophysical Research Letters (46) 12890-12899
In Southern Cascadia, precise Global Navigation Satellite System (GNSS) measurements spanning about 15 years reveal steady deformation due to locking on the Cascadia megathrust punctuated by transient deformation from large earthquakes and episodic tremor and slip events. Near the Mendocino Triple Junction, however, we recognize several abrupt GNSS velocity changes...
Conservation of temporary wetlands
Dani Boix, Aram J.K. Calhoun, David M. Mushet, Kathleen P. Bell, James A. Fitzsimons, Francis Isselin-Nondedeu
2019, Book chapter, Reference Module in Earth Systems and Environmental Sciences
Temporary wetlands are characterized by frequent drying resulting in a unique, highly specialized assemblage of often rare or specialized plant and animal species. They are found on all continents and in a variety of landscape settings. Although accurate estimates of the abundance of temporary wetlands are available in only a...
Interactions of microhabitat and time control grassland bacterial and fungal composition
Michaeline BN Albright, Rebecca C. Mueller, La Verne Gallegos-Graves, Jayne Belnap, Sasha C. Reed, Cheryl R. Kuske
2019, Frontiers in Ecology and Evolution (7)
Dryland grasslands are vast and globally important and, as in all terrestrial ecosystems, soil microbial communities play fundamental roles in regulating dryland ecosystem function. A typical characteristic of drylands is the spatial mosaic of vascular plant cover surrounded by interspace soils, where biological soil crusts (biocrusts)—a complex community of...
Viability of Razorback-Flannelmouth Sucker hybrids
Pilar N. Wolters, David L. Rogowski, David Ward, Alice C. Gibb
2019, The Southwestern Naturalist (63) 280-283
Razorback sucker (Xyrauchen texanus) and flannelmouth sucker (Catostomus latipinnis) live in sympatry in the Colorado River basin. Although morphological intermediates have been described since 1889, hybrids were seemingly rare. Rarity of hybrids was likely attributed to razorback suckers' ability to find conspecific mates throughout the basin. Dams have segmented the...
Predicting fish species richness and habitat relationships using Bayesian hierarchical multispecies occupancy models
Shannon White, Evan Faulk, Caleb Tzilkowski, Andrew Weber, Matt Marshall, Tyler Wagner
2019, Canadian Journal Fisheries and Aquatic Sciences (77)
Understanding how stream fishes respond to changes in habitat availability is complicated by low occurrence rates of many species, which in turn reduces the ability to quantify species–habitat relationships and account for imperfect detection in estimates of species richness. Multispecies occupancy models have been used sparingly in the analysis of...
A multidisciplinary coastal vulnerability assessment for local government focused on ecosystems, Santa Barbara area, California
Monique Myers, Patrick L. Barnard, Edward Beighley, Daniel R. Cayan, Jenifer E. Dugan, Dongmei Feng, Samuel F. Iacobellis, John M. Melack, Henry M. Page
2019, Ocean and Coastal Management (182)
Incorporating coastal ecosystems in climate adaptation planning is needed to maintain the well-being of both natural and human systems. Our vulnerability study uses a multidisciplinary approach to evaluate climate change vulnerability of an urbanized coastal community that could serve as a model approach for communities worldwide, particularly in similar Mediterranean...
Seasonal, spring-neap, and tidal variation in cohesive sediment transport parameters in estuarine shallows
Rachel Allen, Jessica R. Lacy, Mark T. Stacey, Evan A Variano
2019, Journal of Geophysical Research: Oceans (124) 7265-7284
Numerical models for predicting sediment concentrations and transport rely on parameters such as settling velocity and bed erodibility that describe sediment characteristics, yet these parameters are rarely probed directly. We investigated temporal and spatial variation in sediment parameters in the shallows of San Pablo Bay, CA. Flow, turbulence, and suspended...
Discrete Zr and REE mineralization of the Baerzhe rare-metal deposit, China
Kunfeng Qiu, Haocheng Yu, Mingqian Wu, Jianzhen Geng, Xiangkun Ge, Zongyang Gou, Ryan D. Taylor
2019, American Mineralogist (104) 1487-1502
Although REE (lanthanides + Y) mineralization in alkaline silicate systems is commonly accompanied with Zr mineralization worldwide, our understanding of the relationship between Zr and REE mineralization is still incomplete (e.g. Škoda and Novák, 2007; Linnen et al., 2014; Petrella et al., 2014; Möller and Williams-Jones, 2016; Wu et al.,...
Integration of eDNA-based biological monitoring within the US Geological Survey’s national streamgage network
David S. Pilliod, Matthew Laramie, Dorene McCoy, Scott Maclean
2019, Journal of the American Water Resources Association (55) 1505-1518
This study explores the feasibility and utility of integrating environmental DNA (eDNA) assessments of species occurrences into the United States (U.S.) Geological Survey’s national streamgage network. We used an existing network of five gages in southwest Idaho to explore the type of information that could be gained as well as...
DNA Sequencing confirms Tundra Bean Goose (Anser serrirostris serrirostris) occurrence in the Mississippi Alluvial Valley in Arkansas, USA
Douglas C. Osborne, Robert E. Wilson, Lindsay Carlson, Sarah A. Sonsthagen, Sandra L. Talbot
2019, Waterbirds (42) 333-342
—First sighting records of rare occurrences may become increasingly important for recognizing changes in distribution, changes in migratory strategies, or increases in hybridization. We focumented the first record of a Tundra Bean Goose in the Mississippi Alluvial Valley, the outlet and historic floodplain for much of North America and one...
The importance of turtle populations to wetland restoration in the upper Mississippi embayment of the Mississippi Alluvial Valley
Max A Nickerson, Joseph C. Mitchell, Brad Glorioso
2019, Wetlands Ecology and Management (27) 683-692
The Upper Mississippi Embayment (UME) ecoregion covers approximately 141,895 km2 and historically supported 9,712,455 ha of bottomland deciduous forests, swamps, bayous, and rivers. Only about 500 ha (< 0.01%) of pre-settlement bottomland hardwood forest habitat in the Mississippi Alluvial Valley (MAV) in the UME remained by the 1940s because the timber...
Designing multi-scale hierarchical monitoring frameworks for wildlife to support management: A sage-grouse case study
Michael S. O’Donnell, David R. Edmunds, Cameron L. Aldridge, Julie A. Heinrichs, Peter S. Coates, Brian G. Prochazka, Steve E. Hanser
2019, Ecosphere (10)
Population monitoring is integral to the conservation and management of wildlife; yet, analyses of population demographic data rarely consider processes occurring across spatial scales, potentially limiting the effectiveness of adaptive management. Therefore, we developed a method to identify hierarchical levels of organization (i.e., populations) to define multiple spatial scales, specifically...
Leptospirosis in Northern Sea Otters (Enhydra lutris kenyoni) from Washington
Susan Knowles, Deanna Lynch, Nancy J. Thomas
2019, Journal of Wildlife Diseases (56) 466-471
We diagnosed leptospirosis in six northern sea otters (Enhydra lutris kenyoni) that stranded on beaches in Washington, US in 2002. Significant gross findings included cyanotic oral mucous membranes, renal swelling, congestion or pale streaks on the cut surface of the lobules, hematuria, dehydration, lymphadenopathy, pulmonary congestion and rarely adrenal hemorrhage...
Reporting the limits of detection and quantification for environmental DNA assays
Katy E. Klymus, Christopher M. Merkes, Michael J. Allison, Caren S. Goldberg, Caren C. Helbing, Margaret Hunter, Craig Jackson, Richard F. Lance, Anna M. Mangan, Emy M. Monroe, Antoinette J. Piaggio, Joel P. Stokdyk, Chris C. Wilson, Catherine A. Richter
2019, Environmental DNA (2) 271-282
BackgroundEnvironmental DNA (eDNA) analysis is increasingly being used to detect the presence and relative abundance of rare species, especially invasive or imperiled aquatic species. The rapid progress in the eDNA field has resulted in numerous studies impacting conservation and management actions. However, standardization of eDNA...
Rare earth elements in coal and coal fly ash
Clint Scott, Allan Kolker
2019, Fact Sheet 2019-3048
The rare earth elements (REEs) are a group of 17 elements sharing similar chemical properties. They include yttrium (Y, atomic number 39), scandium (Sc, atomic number 21), and the 15 elements of the lanthanide series, atomic numbers 57 (lanthanum, La) to 71 (lutetium, Lu). Because promethium (Pm, atomic number 61)...