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Monitoring Least Bitterns (Ixobrychis exilis) in Vermont: Detection probability and occupancy modeling
Aswini Cherukuri, Allan Strong, Therese M. Donovan
2018, Northeastern Naturalist (25) 56-71
Ixobrychus exillis (Least Bittern) is listed as a species of high concern in the North American Waterbird Conservation Plan and is a US Fish and Wildlife Service migratory bird species of conservation concern in the Northeast. Little is known about the population of Least Bitterns in the Northeast because of their...
Species distribution modeling in regions of high need and limited data: waterfowl of China
Diann J. Prosser, Changqing Ding, R. Michael Erwin, Taej Mundkur, Jeffery D. Sullivan, Erle C. Ellis
2018, Avian Research (9) 1-14
BackgroundA number of conservation and societal issues require understanding how species are distributed on the landscape, yet ecologists are often faced with a lack of data to develop models at the resolution and extent desired, resulting in inefficient use of conservation resources. Such a situation...
Volcanic aquifers of Hawai‘i—Hydrogeology, water budgets, and conceptual models
Scot K. Izuka, John A. Engott, Kolja Rotzoll, Maoya Bassiouni, Adam G. Johnson, Lisa D. Miller, Alan Mair
2018, Scientific Investigations Report 2015-5164
Hawai‘i’s aquifers have limited capacity to store fresh groundwater because each island is small and surrounded by saltwater. Saltwater also underlies much of the fresh groundwater. Fresh groundwater resources are, therefore, particularly vulnerable to human activity, short-term climate cycles, and long-term climate change. Availability of fresh groundwater for human use...
Combining multiple sources of data to inform conservation of Lesser Prairie-Chicken populations
Beth Ross, David A. Haukos, Christian A. Hagen, James Pitman
2018, The Auk (135) 228-239
Conservation of small populations is often based on limited data from spatially and temporally restricted studies, resulting in management actions based on an incomplete assessment of the population drivers. If fluctuations in abundance are related to changes in weather, proper management is especially important, because extreme weather events could disproportionately...
Oil and gas development footprint in the Piceance Basin, western Colorado
Cericia D. Martinez, Todd M. Preston
2018, Science of the Total Environment (616-617) 355-362
Understanding long-term implications of energy development on ecosystem functionrequires establishing regional datasets to quantify past development and determine relationships to predict future development. The Piceance Basin in western Colorado has a history of energy production and development is expected to continue into the foreseeable future due to abundant natural gas...
Efficacy of otoliths and first dorsal spines for preliminary age and growth determination in Atlantic Tripletails
Russell T. Parr, Robert B. Bringolf, Cecil A. Jennings
2018, Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science (10) 71-79
The Atlantic Tripletail Lobotes surinamensis is a popular sport fish for which age and growth data are scarce in general and nonexistent for Georgia (GA), USA, waters. These data are necessary to ensure that management regulations are adequate to protect this species, especially given its popularity as a sport fish. We evaluated...
Bottom trawl assessment of Lake Ontario prey fishes
Brian Weidel, Michael J. Connerton, Jeremy Holden
2018, Report, NYSDEC Lake Ontario Annual Report 2017
Managing Lake Ontario fisheries in an ecosystem-context requires prey fish community and population data. Since 1978, multiple annual bottom trawl surveys have quantified prey fish dynamics to inform management relative to published Fish Community Objectives. In 2017, two whole-lake surveys collected 341 bottom trawls (spring: 204, fall: 137), at depths...
THRESH—Software for tracking rainfall thresholds for landslide and debris-flow occurrence, user manual
Rex L. Baum, Sarah J. Fischer, Jacob C. Vigil
2018, Techniques and Methods 14-A2
Precipitation thresholds are used in many areas to provide early warning of precipitation-induced landslides and debris flows, and the software distribution THRESH is designed for automated tracking of precipitation, including precipitation forecasts, relative to thresholds for landslide occurrence. This software is also useful for analyzing multiyear precipitation records to compare...
General introduction for the “National Field Manual for the Collection of Water-Quality Data”
U.S. Geological Survey
2018, Techniques and Methods 9-A0
BackgroundAs part of its mission, the U.S. Geological Survey (USGS) collects data to assess the quality of our Nation’s water resources. A high degree of reliability and standardization of these data are paramount to fulfilling this mission. Documentation of nationally accepted methods used by USGS personnel serves to maintain consistency...
Suspended-sediment transport from the Green-Duwamish River to the Lower Duwamish Waterway, Seattle, Washington, 2013–17
Craig A. Senter, Kathleen E. Conn, Robert W. Black, Norman Peterson, Ann M. Vanderpool-Kimura, James R. Foreman
2018, Open-File Report 2018-1029
The Green-Duwamish River transports watershed-derived sediment to the Lower Duwamish Waterway Superfund site near Seattle, Washington. Understanding the amount of sediment transported by the river is essential to the bed sediment cleanup process. Turbidity, discharge, suspended-sediment concentration (SSC), and particle-size data were collected by the U.S. Geological Survey (USGS)...
Overcoming equifinality: Leveraging long time series for stream metabolism estimation
Alison P. Appling, Robert O. Hall Jr., Charles B. Yackulic, Maite Arroita
2018, Journal of Geophysical Research: Biogeosciences (123) 624-645
The foundational ecosystem processes of gross primary production (GPP) and ecosystem respiration (ER) cannot be measured directly but can be modeled in aquatic ecosystems from subdaily patterns of oxygen (O2) concentrations. Because rivers and streams constantly exchange O2 with the atmosphere, models must either use empirical estimates of the gas exchange...
AMModels: An R package for storing models, data, and metadata to facilitate adaptive management
Therese M. Donovan, Jonathan Katz
2018, PLoS ONE (13) 1-57
Agencies are increasingly called upon to implement their natural resource management programs within an adaptive management (AM) framework. This article provides the background and motivation for the R package, AMModels. AMModels was developed under R version 3.2.2. The overall goal of AMModels is simple: To codify knowledge in the form of models and...
Flood-inundation maps for Cedar Creek at 18th Street at Auburn, Indiana
Kathleen K. Fowler
2018, Scientific Investigations Report 2017-5156
Digital flood-inundation maps for a 1.9-mile reach of Cedar Creek at Auburn, Indiana (Ind.), from the First Street bridge, downstream to the streamgage at 18th Street, then ending approximately 1,100 feet (ft) downstream of the Baltimore and Ohio railroad, were created by the U.S. Geological Survey (USGS) in cooperation with...
An analytical framework for estimating aquatic species density from environmental DNA
Thierry Chambert, David S. Pilliod, Caren S. Goldberg, Hideyuki Doi, Teruhiko Takahara
2018, Ecology and Evolution (8) 3468-3477
Environmental DNA (eDNA) analysis of water samples is on the brink of becoming a standard monitoring method for aquatic species. This method has improved detection rates over conventional survey methods and thus has demonstrated effectiveness for estimation of site occupancy and species distribution. The frontier of eDNA applications, however, is...
Surrounding land cover types as predictors of palustrine wetland vegetation quality in conterminous USA
Martin A. Stapanian, Brian Gara, William Schumacher
2018, Science of the Total Environment (619-620) 366-375
The loss of wetland habitats and their often-unique biological communities is a major environmental concern. We examined vegetation data obtained from 380 wetlands sampled in a statistical survey of wetlands in the USA. Our goal was to identify which surrounding land cover types best predict two indices of vegetation quality...
A flatfile of ground motion intensity measurements from induced earthquakes in Oklahoma and Kansas
Steven B. Rennolet, Morgan P. Moschetti, Eric M. Thompson, William L. Yeck
2018, Earthquake Spectra (34) 1-20
We have produced a uniformly processed database of orientation-independent (RotD50, RotD100) ground motion intensity measurements containing peak horizontal ground motions (accelerations and velocities) and 5-percent-damped pseudospectral accelerations (0.1–10 s) from more than 3,800 M ≥ 3 earthquakes in Oklahoma and Kansas that occurred between January 2009 and December 2016. Ground motion time...
Automated remote cameras for monitoring alluvial sandbars on the Colorado River in Grand Canyon, Arizona
Paul E. Grams, Robert B. Tusso, Daniel D. Buscombe
2018, Open-File Report 2018-1019
Automated camera systems deployed at 43 remote locations along the Colorado River corridor in Grand Canyon National Park, Arizona, are used to document sandbar erosion and deposition that are associated with the operations of Glen Canyon Dam. The camera systems, which can operate independently for a year or more, consist...
Effects of the proposed California WaterFix North Delta Diversion on flow reversals and entrainment of juvenile Chinook salmon (Oncorhynchus tshawytscha) into Georgiana Slough and the Delta Cross Channel, northern California
Russell W. Perry, Jason G. Romine, Adam C. Pope, Scott D. Evans
2018, Open-File Report 2018-1028
The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather...
Assessment of distribution and abundance estimates for Mariana swiftlets (Aerodramus bartschi) via examination of survey methods
Nathan C. Johnson, Susan M. Haig, Stephen M. Mosher
2018, Wilson Journal of Ornithology (130) 23-29
We described past and present distribution and abundance data to evaluate the status of the endangered Mariana Swiftlet (Aerodramus bartschi), a little-known echolocating cave swiftlet that currently inhabits 3 of 5 formerly occupied islands in the Mariana archipelago. We then evaluated the survey methods used to attain these estimates via...
Rare long-distance dispersal of the Island Night Lizard, Xantusia riversiana, maintains high diversity in a fragmented environment
Ryan P. O’Donnell, Charles A. Drost, Gary M. Fellers, Benjamin A. Crabb, Karen E. Mock
2018, Conservation Genetics (19) 803-814
The Island Night Lizard (Xantusia riversiana) is endemic to three of the Channel Islands off the coast of California, USA. Introduced species such as goats, sheep, and cats have profoundly affected the fauna and flora of the islands for over 150 years, but most of these non-native species have been...
AutoCNet: A Python library for sparse multi-image correspondence identification for planetary data
Jason R. Laura, Kelvin Rodriguez, Adam Paquette, Evin Dunn
2018, SoftwareX (7) 37-40
In this work we describe the AutoCNet library, written in Python, to support the application of Computer Vision techniques for n-image correspondence identication in remotely sensed planetary images and subsequent bundle adjustment. The library is designed to support exploratory data analysis, algorithm and processing pipeline development, and application at scale...
Status and understanding of groundwater quality in the North San Francisco Bay Shallow Aquifer study unit, 2012; California GAMA Priority Basin Project (ver. 1.1, February 2018)
George L. V Bennett V
2018, Scientific Investigations Report 2017-5051
Groundwater quality in the North San Francisco Bay Shallow Aquifer study unit (NSF-SA) was investigated as part of the Priority Basin Project of the California Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is in Marin, Mendocino, Napa, Solano, and Sonoma Counties and included two physiographic study areas:...
Ground penetrating radar and differential global positioning system data collected in April 2016 from Fire Island, New York
Arnell S. Forde, Julie Bernier, Jennifer L. Miselis
2018, Data Series 1078
Researchers from the U.S. Geological Survey (USGS) conducted a long-term coastal morphologic-change study at Fire Island, New York, prior to and after Hurricane Sandy impacted the area in October 2012. The Fire Island Coastal Change project objectives include understanding the morphologic evolution of the barrier island system...
Seeking excellence: An evaluation of 235 international laboratories conducting water isotope analyses by isotope-ratio and laser-absorption spectrometry
Leonard I. Wassenaar, S. Terzer-Wassmuth, C. Douence, L. Araguas-Araguas, P. K. Aggarwal, Tyler B. Coplen
2018, Rapid Communications in Mass Spectrometry (32) 393-406
RationaleWater stable isotope ratios (δ2H and δ18O values) are widely used tracers in environmental studies; hence, accurate and precise assays are required for providing sound scientific information. We tested the analytical performance of 235 international laboratories conducting water isotope analyses using dual-inlet and continuous-flow isotope ratio mass spectrometers and laser spectrometers...
A floodplain continuum for Atlantic coast rivers of the Southeastern US: Predictable changes in floodplain biota along a river's length
Darold P. Batzer, Gregory E. Noe, Linda Lee, Mark Galatowitsch
2018, Wetlands (38) 1-13
Floodplains are among the world’s economically-most-valuable, environmentally-most-threatened, and yet conceptually-least-understood ecosystems. Drawing on concepts from existing riverine and wetland models, and empirical data from floodplains of Atlantic Coast rivers in the Southeastern US (and elsewhere when possible), we introduce a conceptual model to explain a continuum of longitudinal variation in...