A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing
Thierry A. Chambert, J. Hardin Waddle, David A.W. Miller, Susan C. Walls, James D. Nichols
2018, Methods in Ecology and Evolution (9) 560-570
The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing...
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan K. McIlroy, DeWayne R. Derryberry
2018, Ecological Indicators (84) 793-802
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature...
Overview of a comprehensive resource database for the assessment of recoverable hydrocarbons produced by carbon dioxide enhanced oil recovery
Marshall Carolus, Khosrow Biglarbigi, Peter D. Warwick, Emil D. Attanasi, Philip A. Freeman, Celeste D. Lohr
2018, Techniques and Methods 7-C16
A database called the “Comprehensive Resource Database” (CRD) was prepared to support U.S. Geological Survey (USGS) assessments of technically recoverable hydrocarbons that might result from the injection of miscible or immiscible carbon dioxide (CO2) for enhanced oil recovery (EOR). The CRD was designed by INTEK Inc., a consulting company under...
Research note: Mapping spatial patterns in sewer age, material, and proximity to surface waterways to infer sewer leakage hotspots
Kristina G. Hopkins, Daniel J. Bain
2018, Landscape and Urban Planning (170) 320-324
Identifying areas where deteriorating sewer infrastructure is in close proximity to surface waterways is needed to map likely connections between sewers and streams. We present a method to estimate sewer installation year and deterioration status using historical maps of the sewer network, parcel-scale property assessment data, and pipe material. Areas...
Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones
Alexander Y. Karatayev, Lyubov E. Burlakova, Knut Mehler, Serghei A. Bocaniov, Paris D. Collingsworth, Glenn Warren, Richard T. Kraus, Elizabeth K. Hinchey
2018, Journal of Great Lakes Research (44) 639-649
Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management...
Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter
Jennifer W. Harden, Gustaf Hugelius, Anders Ahlstrom, Joseph C. Blankinship, Ben Bond-Lamberty, Corey Lawrence, Julie Loisel, Avni Malhotra, Robert B. Jackson, Stephen M. Ogle, Claire Phillips, Rebecca Ryals, Katherine Todd-Brown, Rodrigo Vargas, Sintana E. Vergara, M. Francesca Cotrufo, Marco Keiluweit, Katherine Heckman, Susan E. Crow, Whendee L. Silver, Marcia DeLonge, Lucas E. Nave
2018, Global Change Biology (24) e705-e718
Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have...
Groundwater development stress: Global-scale indices compared to regional modeling
William Alley, Brian R. Clark, Matt Ely, Claudia C. Faunt
2018, Groundwater (56) 266-275
The increased availability of global datasets and technologies such as global hydrologic models and the Gravity Recovery and Climate Experiment (GRACE) satellites have resulted in a growing number of global-scale assessments of water availability using simple indices of water stress. Developed initially for surface water, such indices are increasingly used...
Variation in fish mercury concentrations in streams of the Adirondack region, New York: A simplified screening approach using chemical metrics
Douglas A. Burns, Karen Riva-Murray
2018, Ecological Indicators (84) 648-661
Simple screening approaches for the neurotoxicant methylmercury (MeHg) in aquatic ecosystems may be helpful in risk assessments of natural resources. We explored the development of such an approach in the Adirondack Mountains of New York, USA, a region with high levels of MeHg bioaccumulation. Thirty-six perennial streams broadly representative of...
Estimating carbon and showing impacts of drought using satellite data in regression-tree models
Stephen P. Boyte, Bruce K. Wylie, Danny Howard, Devendra Dahal, Tagir G. Gilmanov
2018, International Journal of Remote Sensing (39) 374-398
Integrating spatially explicit biogeophysical and remotely sensed data into regression-tree models enables the spatial extrapolation of training data over large geographic spaces, allowing a better understanding of broad-scale ecosystem processes. The current study presents annual gross primary production (GPP) and annual ecosystem respiration (RE) for 2000–2013 in several short-statured vegetation...
States and rates: Complementary approaches to developing flow‐ecology relationships
Kit Wheeler, Seth J. Wenger, Mary Freeman
2018, Freshwater Biology (63) 906-916
In recognition of the influence of flow on riverine habitats and organisms, stream ecologists have devoted considerable effort to the development of quantitative predictive relationships describing ecological responses to flow variability, i.e. flow‐ecology relationships.Methods used to generate flow‐ecology relationships can be thought of as a continuum bookended by pure...
Comparison of four modeling tools for the prediction of potential distribution for non-indigenous weeds in the United States
Roger Magarey, Leslie Newton, Seung C. Hong, Yu Takeuchi, Dave Christie, Catherine S. Jarnevich, Lisa Kohl, Martin Damus, Steven I. Higgins, Leah Miller, Karen Castro, Amanda M. West, John Hastings, Gericke Cook, John Kartesz, Anthony Koop
2018, Biological Invasions (20) 679-694
This study compares four models for predicting the potential distribution of non-indigenous weed species in the conterminous U.S. The comparison focused on evaluating modeling tools and protocols as currently used for weed risk assessment or for predicting the potential distribution of invasive weeds. We used six weed species (three highly...
Improving predictions of tropical forest response to climate change through integration of field studies and ecosystem modeling
Xiaohui Feng, Maria Uriarte, Grizelle Gonzalez, Sasha C. Reed, Jill Thompson, Jess K. Zimmerman, Lora Murphy
2018, Global Change Biology (24) e213-e232
Tropical forests play a critical role in carbon and water cycles at a global scale. Rapid climate change is anticipated in tropical regions over the coming decades and, under a warmer and drier climate, tropical forests are likely to be net sources of carbon rather than sinks. However, our understanding...
Northern tamarisk beetle (Diorhabda carinulata) and tamarisk (Tamarix spp.) interactions in the Colorado River basin
Pamela L. Nagler, Uyen Nguyen, Heather L. Bateman, Christopher Jarchow, Edward P. Glenn, William J. Waugh, Charles van Riper III
2018, Restoration Ecology (26) 348-359
Northern tamarisk beetles (Diorhabda carinulata) were released in the Upper Colorado River Basin in the United States in 2004–2007 to defoliate introduced tamarisk shrubs (Tamarix spp.) in the region’s riparian zones. The primary purpose was to control the invasive shrub and reduce evapotranspiration (ET) by tamarisk in an attempt to increase stream...
Weather-centric rangeland revegetation planning
Stuart P. Hardegree, John T. Abatzoglou, Mark W. Brunson, Matthew J. Germino, Katherine C. Hegewisch, Corey A. Moffet, David S. Pilliod, Bruce A. Roundy, Alex R. Boehm, Gwendwr R. Meredith
2018, Rangeland Ecology and Management (71) 1-11
Invasive annual weeds negatively impact ecosystem services and pose a major conservation threat on semiarid rangelands throughout the western United States. Rehabilitation of these rangelands is challenging due to interannual climate and subseasonal weather variability that impacts seed germination, seedling survival and establishment, annual weed dynamics, wildfire frequency, and soil...
Temporal variation of tectonic tremor activity in southern Taiwan around the 2010 ML6.4 Jiashian Earthquake
Kevin Chao, Zhigang Peng, Ya-Ju Hsu, Kazushige Obara, Kuo-En Ching, Chunquan Wu, Hsin-Chieh Pu, Peih-Lin Leu, Aaron Wech
2018, Journal of Geophysical Research B: Solid Earth (122) 5417-5434
Deep tectonic tremor, which is extremely sensitive to small stress variations, could be used to monitor fault-zone processes during large earthquake cycles and aseismic processes before large earthquakes. In this study, we develop an algorithm for the automatic detection and location of tectonic tremor beneath the southern Central Range of Taiwan and examine...
The influence of data characteristics on detecting wetland/stream surface-water connections in the Delmarva Peninsula, Maryland and Delaware
Melanie K. Vanderhoof, Hayley Distler, Megan W. Lang, Laurie C. Alexander
2018, Wetlands Ecology and Management (26) 63-86
The dependence of downstream waters on upstream ecosystems necessitates an improved understanding of watershed-scale hydrological interactions including connections between wetlands and streams. An evaluation of such connections is challenging when, (1) accurate and complete datasets of wetland and stream locations are often not available and (2) natural variability in surface-water...
Evidence of sound production by spawning lake trout (Salvelinus namaycush) in lakes Huron and Champlain
Nicholas S. Johnson, Dennis Higgs, Thomas R. Binder, J. Ellen Marsden, Tyler John Buchinger, Linnea Brege, Tyler Bruning, Steve A. Farha, Charles C. Krueger
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 429-438
Two sounds associated with spawning lake trout (Salvelinus namaycush) in lakes Huron and Champlain were characterized by comparing sound recordings to behavioral data collected using acoustic telemetry and video. These sounds were named growls and snaps, and were heard on lake trout spawning reefs, but not on a non-spawning reef,...
Groundwater and streamflow information program Kansas Cooperative Water Science since 1895
Colin C. Painter, Ariele R. Kramer, Brian P. Kelly, Chantelle Davis
2018, General Information Product 176
The U.S. Geological Survey, in cooperation with State, local, and other Federal agencies, operates a network of streamgages throughout the State of Kansas. Data provided by this network are used to forecast floods, operate reservoirs, develop water policy, administer regulation of water, and perform interpretive analyses of streamflow. This data...
Science programs in Kansas
Ariele R. Kramer, Brian P. Kelly
2018, General Information Product 175
The U.S. Geological Survey (USGS) is a non-regulatory Earth science agency within the Department of the Interior that provides impartial scientific information to describe and understand the health of our ecosystems and environment; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and...
Global trends in mineral commodities for advanced technologies
Steven M. Fortier, Christine Lyn Thomas, Erin A. McCullough, Amy Tolcin
2018, Natural Resources Research (27) 191-200
The U.S. Geological Survey National Minerals Information Center (NMIC) is the U.S. Government agency tasked with the collection, analysis, and dissemination of information on the production, consumption, import, export, and other measures of the flows of non-fuel mineral commodities of importance to the U.S. economy and national security. The NMIC...
Interoperability in planetary research for geospatial data analysis
Trent M. Hare, Angelo P. Rossi, Alessandro Frigeri, Chiara Marmo
2018, Planetary and Space Science (150) 36-42
For more than a decade there has been a push in the planetary science community to support interoperable methods for accessing and working with geospatial data. Common geospatial data products for planetary research include image mosaics, digital elevation or terrain models, geologic maps,...
The origin of shallow lakes in the Khorezm Province, Uzbekistan, and the history of pesticide use around these lakes
Michael R. Rosen, Arica Crootof, Liam Reidy, Laurel Saito, Bakhriddin Nishonov, Julian A. Scott
2018, Journal of Paleolimnology (59) 201-219
The economy of the Khorezm Province in Uzbekistan relies on the large-scale agricultural production of cotton. To sustain their staple crop, water from the Amu Darya is diverted for irrigation through canal systems constructed during the early to mid-twentieth century when this region was part of the Soviet Union. These...
Lakes and reservoirs—Guidelines for study design and sampling
U.S. Geological Survey
2018, Techniques and Methods 9-A10
The “National Field Manual for the Collection of Water-Quality Data” (NFM) is an online report with separately published chapters that provides the protocols and guidelines by which U.S. Geological Survey personnel obtain the data used to assess the quality of the Nation’s surface-water and groundwater resources. Chapter A10 reviews limnological...
Polygons of global undersea features for geographic searches
Stephen R. Hartwell, Dana K. Wingfield, Alan O. Allwardt, Frances L. Lightsom, Florence L. Wong
2018, Open-File Report 2014-1040
A shapefile of 311 undersea features from all major oceans and seas has been created as an aid for retrieving georeferenced information resources. Geospatial information systems with the capability to search user-defined, polygonal geographic areas will be able to utilize this shapefile or secondary products derived from it, such as...
Fatality estimator user’s guide
Manuela M. Huso, Nicholas Som, Lew Ladd
2018, Data Series 729
This publication is the User's Guide for software developed to estimate wildlife fatalities at wind-power facilities, although the software is applicable to a variety of circumstances in which the objective is to estimate the size of a superpopulation and the probability of detection of the individuals is less than one....