Carbon and energy fluxes in cropland ecosystems: a model-data comparison
E. Lokupitiya, A. Scott Denning, K. Schaefer, D. Ricciuto, R. Anderson, M. A. Arain, I. Baker, A. G. Barr, G. Chen, J.M. Chen, P. Ciais, D.R. Cook, M.C. Dietze, M. El Maayar, M. Fischer, R. Grant, D. Hollinger, C. Izaurralde, A. Jain, C.J. Kucharik, Z. Li, S. Liu, L. Li, R. Matamala, P. Peylin, D. Price, S. W. Running, A. Sahoo, M. Sprintsin, A.E. Suyker, H. Tian, Christina Tonitto, M.S. Torn, Hans Verbeeck, S.B. Verma, Y. Xue
2016, Biogeochemistry (128) 53-76
Croplands are highly productive ecosystems that contribute to land–atmosphere exchange of carbon, energy, and water during their short growing seasons. We evaluated and compared net ecosystem exchange (NEE), latent heat flux (LE), and sensible heat flux (H) simulated by a suite of ecosystem models at five agricultural eddy covariance flux...
The road to NHDPlus — Advancements in digital stream networks and associated catchments
Richard B. Moore, Thomas A. Dewald
2016, Journal of the American Water Resources Association (52) 890-900
A progression of advancements in Geographic Information Systems techniques for hydrologic network and associated catchment delineation has led to the production of the National Hydrography Dataset Plus (NHDPlus). NHDPlus is a digital stream network for hydrologic modeling with catchments and a suite of related geospatial data. Digital stream networks with...
Amplification of postwildfire peak flow by debris
Jason W. Kean, Luke McGuire, Francis K. Rengers, Joel B. Smith, Dennis M. Staley
2016, Geophysical Research Letters (43) 8545-8553
In burned steeplands, the peak depth and discharge of postwildfire runoff can substantially increase from the addition of debris. Yet methods to estimate the increase over water flow are lacking. We quantified the potential amplification of peak stage and discharge using video observations of postwildfire runoff, compiled data on postwildfire...
Insights into plant water uptake from xylem-water isotope measurements in two tropical catchments with contrasting moisture conditions
Jaivime Evaristo, Jeffrey J. McDonnell, Martha A. Scholl, L. Adrian Bruijnzeel, Kwok P. Chun
2016, Hydrological Processes (30) 3210-3227
Water transpired by trees has long been assumed to be sourced from the same subsurface water stocks that contribute to groundwater recharge and streamflow. However, recent investigations using dual water stable isotopes have shown an apparent ecohydrological separation between tree-transpired water and stream water. Here we present evidence for such...
Volcanic geology, hydrogeology, and geothermal potential of the eastern Snake River Plain
Michael McCurry, Roy C. Bartholomay, Mary K. V. Hodges, Robert Podgorney
2016, Northwest Geology (45) 125-154
No abstract available....
sbtools: A package connecting R to cloud-based data for collaborative online research
Luke Winslow, Scott Chamberlain, Alison P. Appling, Jordan S. Read
2016, The R Journal (8) 387-398
The adoption of high-quality tools for collaboration and reproducible research such as R and Github is becoming more common in many research fields. While Github and other version management systems are excellent resources, they were originally designed to handle code and scale poorly to large text-based or binary datasets. A...
Noncontact methods for measuring water-surface elevations and velocities in rivers: Implications for depth and discharge extraction
Jonathan M. Nelson, Paul J. Kinzel, Richard R. McDonald, Mark Schmeeckle
2016, Conference Paper, RiverFlow 2016
Recently developed optical and videographic methods for measuring water-surface properties in a noninvasive manner hold great promise for extracting river hydraulic and bathymetric information. This paper describes such a technique, concentrating on the method of infrared videog- raphy for measuring surface velocities and both acoustic (laboratory-based) and laser-scanning (field-based) techniques for...
Effects of spray-dried Pseudomonas fluorescens, strain CL145A (Zequanox®) on reproduction and early development of the fathead minnow (Pimephales promelas).
Diane L. Waller, James A. Luoma
2016, Report
The biopesticide, Zequanox®, is registered for dreissenid mussel control in open water systems. Previous toxicity trials with nontarget organisms, including young-of-the year of several fish species and invertebrates, demonstrated selectivity of Zequanox for dreissenids. However, data are lacking on its safety to reproductive and early life stages of fish. The...
Novel cell-based assay for detection of thyroid receptor beta-interacting environmental contaminants
Diana A. Stavreva, Lyuba Varticovski, Ludmila Levkova, Anuja A. George, Luke Davis, Gianluca Pegoraro, Vicki S. Blazer, Luke R. Iwanowicz, Gordon L. Hager
2016, Toxicology (368-369) 69-79
Even though the presence of endocrine disrupting chemicals (EDCs) with thyroid hormone (TH)-like activities in the environment is a major health concern, the methods for their efficient detection and monitoring are still limited. Here we describe a novel cell assay, based on the translocation of a green fluorescent protein (GFP)—tagged...
Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health
Dawn N. King, Maura J. Donohue, Stephen J. Vesper, Eric N. Villegas, Michael W. Ware, Megan E. Vogel, Edward Furlong, Dana W. Kolpin, Susan T. Glassmeyer, Stacy Pfaller
2016, Science of the Total Environment (562) 987-995
An occurrence survey was conducted on selected pathogens in source and treated drinking water collected from 25 drinking water treatment plants (DWTPs) in the United States. Water samples were analyzed for the protozoa Giardia and Cryptosporidium (EPA Method 1623); the fungi Aspergillus fumigatus, Aspergillus niger and Aspergillus terreus (quantitative PCR...
Geochemistry of the Black Sea during the last 15 kyr: A protracted evolution of its hydrography and ecology
David Z. Piper
2016, Paleoceanography (31) 1117-1137
The Black Sea is a 2200 m deep anoxic, marine sea connected to the Mediterranean Sea via the Dardanelles Strait, Marmara Sea, and the 3 km wide, 35 m deep Bosphorus Strait. The biogeochemistry of sediment from the Anatolia slope has recorded changes to the hydrography leading up to and following the input...
Advancing environmental flow science: Developing frameworks for altered landscapes and integrating efforts across disciplines.
Shannon K. Brewer, Ryan A. McManamay, Andrew D. Miller, Robert Mollenhauer, Thomas A. Worthington, Tom Arsuffi
2016, Environmental Management (58) 175-192
Environmental flows represent a legal mechanism to balance existing and future water uses and sustain non-use values. Here, we identify current challenges, provide examples where they are important, and suggest research advances that would benefit environmental flow science. Specifically, environmental flow science would benefit by (1) developing approaches...
Landscape effects of wildfire on permafrost distribution in interior Alaska derived from remote sensing
Dana R. N. Brown, M. Torre Jorgenson, Knut Kielland, David L. Verbyla, Anupma Prakash, Joshua C. Koch
2016, Remote Sensing (8) 1-22
Climate change coupled with an intensifying wildfire regime is becoming an important driver of permafrost loss and ecosystem change in the northern boreal forest. There is a growing need to understand the effects of fire on the spatial distribution of permafrost and its associated ecological consequences. We focus on the...
Urban base flow with low impact development
Aditi Bhaskar, Dianna M. Hogan, Stacey A. Archfield
2016, Hydrological Processes (30) 3156-3171
A novel form of urbanization, low impact development (LID), aims to engineer systems that replicate natural hydrologic functioning, in part by infiltrating stormwater close to the impervious surfaces that generate it. We sought to statistically evaluate changes in a base flow regime because of urbanization with LID, specifically changes in...
Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?
Desiree D. Tullos, Cara Walter, Jason B. Dunham
2016, Water Resources Research (52) 5938-5950
This study investigated how the resolution of observation influences interpretation of how fish, juvenile Coho Salmon (Oncorhynchus kisutch), exploit the hydraulic environment in streams. Our objectives were to evaluate how spatial resolution of the flow field observation influenced: (1) the velocities considered to be representative of habitat units; (2) patterns...
The Mississippi River: A place for fish
Harold Schramm, Brian Ickes
Yushun Chen, Duane Chapman, John Jackson, Daqing Chen, Zhongjie Li, Jack Kilgore, Quinton E. Phelps, Michael Eggleton, editor(s)
2016, Book chapter, Fishery Resources, Environment, and Conservation in the Mississippi and Yangtze (Changjiang) River Basins
The Mississippi River flows 3,734 km from its source at Lake Itasca, Minnesota to its outlet at the Gulf of Mexico. Along its course, it collects water from portions of two Canadian provinces and 41 % of the conterminous United States. Although greatly altered for navigation and flood control throughout...
On the deterministic and stochastic use of hydrologic models
William H. Farmer, Richard M. Vogel
2016, Water Resources Research (52) 5619-5633
Environmental simulation models, such as precipitation-runoff watershed models, are increasingly used in a deterministic manner for environmental and water resources design, planning, and management. In operational hydrology, simulated responses are now routinely used to plan, design, and manage a very wide class of water resource systems. However, all such models...
Managing water and riparian habitats on the Bill Williams River with scientific benefit for other desert river systems
John Hickey, Woodrow Fields, Andrew Hautzinger, Steven Sesnie, Patrick B. Shafroth, Dick Gilbert
2016, Report
This report details modeling to: 1) codify flow-ecology relationships for riparian species of the Bill Williams River as operational guidance for water managers, 2) test the guidance under different climate scenarios, and 3) revise the operational guidance as needed to address the effects of climate change. Model applications detailed herein...
Budgets and chemical characterization of groundwater for the Diamond Valley flow system, central Nevada, 2011–12
David L. Berger, C. Justin Mayers, C. Amanda Garcia, Susan G. Buto, Jena M. Huntington
2016, Scientific Investigations Report 2016-5055
The Diamond Valley flow system consists of six hydraulically connected hydrographic areas in central Nevada. The general down-gradient order of the areas are southern and northern Monitor Valleys, Antelope Valley, Kobeh Valley, Stevens Basin, and Diamond Valley. Groundwater flow in the Diamond Valley flow system terminates at a large playa...
Osmoregulatory physiology and rapid evolution of salinity tolerance in threespine stickleback recently introduced to fresh water
Jeffrey N Divino, Michelle Y. Monette, Stephen D. McCormick, Paul H. Yancey, Kyle G. Flannery, Michael A. Bell, Jennifer L. Rollins, Frank A. von Hippel, Eric T. Schultz
2016, Evolutionary Ecology Research (17) 179-201
Background: Post-Pleistocene diversification of threespine stickleback in fresh water offers a valuable opportunity to study how changes in environmental salinity shape physiological evolution in fish. In Alaska, the presence of both ancestral oceanic populations and derived landlocked populations, including recent lake introductions, allows us to examine rates and direction of evolution...
Agricultural irrigated land-use inventory for the counties in the Suwannee River Water Management District in Florida, 2015
Richard L. Marella, Joann F. Dixon, Darbi R. Berry
2016, Open-File Report 2016-1111
A detailed inventory of irrigated crop acreage is not available at the level of resolution needed to accurately estimate agricultural water use or to project future water demands in many Florida counties. A detailed digital map and summary of irrigated acreage during the 2015 growing season was developed for 13...
Ordinary kriging as a tool to estimate historical daily streamflow records
William H. Farmer
2016, Hydrology and Earth System Sciences (20) 2721-2735
Efficient and responsible management of water resources relies on accurate streamflow records. However, many watersheds are ungaged, limiting the ability to assess and understand local hydrology. Several tools have been developed to alleviate this data scarcity, but few provide continuous daily streamflow records at individual streamgages within an entire region....
Evaluation of leaf removal as a means to reduce nutrient concentrations and loads in urban stormwater
William R. Selbig
2016, Science of the Total Environment (571) 124-133
While the sources of nutrients to urban stormwater are many, the primary contributor is often organic detritus, especially in areas with dense overhead tree canopy. One way to remove organic detritus before it becomes entrained in runoff is to implement a city-wide leaf collection and...
Regional flow duration curves: Geostatistical techniques versus multivariate regression
Alessio Pugliese, William H. Farmer, Attilio Castellarin, Stacey A. Archfield, Richard M. Vogel
2016, Advances in Water Resources (96) 11-22
A period-of-record flow duration curve (FDC) represents the relationship between the magnitude and frequency of daily streamflows. Prediction of FDCs is of great importance for locations characterized by sparse or missing streamflow observations. We present a detailed comparison of two methods which are capable of predicting an FDC at ungauged...
Quantifying the eroded volume of mercury-contaminated sediment using terrestrial laser scanning at Stocking Flat, Deer Creek, Nevada County, California, 2010–13
James F. Howle, Charles N. Alpers, Gerald W. Bawden, Sandra Bond
2016, Scientific Investigations Report 2015-5179
High-resolution ground-based light detection and ranging (lidar), also known as terrestrial laser scanning, was used to quantify the volume of mercury-contaminated sediment eroded from a stream cutbank at Stocking Flat along Deer Creek in the Sierra Nevada foothills, about 3 kilometers west of Nevada City, California. Terrestrial laser scanning was...
