Labeling poststorm coastal imagery for machine learning: Measurement of interrater agreement
Evan B. Goldstein, Daniel D. Buscombe, Eli D. Lazarus, Somya Mohanty, Shah N. Rafique, K A Anarde, Andrew D Ashton, Tomas Beuzen, Katherine A. Castagno, Nicholas Cohn, Matthew P. Conlin, Ashley Ellenson, Megan Gillen, Paige A. Hovenga, Jin-Si R. Over, Rose V. Palermo, Katherine Ratlif, Ian R Reeves, Lily H. Sanborn, Jessamin A. Straub, Luke A. Taylor, Elizabeth J. Wallace, Jonathan A. Warrick, Phillipe Alan Wernette, Hannah E Williams
2021, Earth and Space Science (8)
Classifying images using supervised machine learning (ML) relies on labeled training data—classes or text descriptions, for example, associated with each image. Data-driven models are only as good as the data used for training, and this points to the importance of high-quality labeled data for developing a ML...
Non-native poeciliids in hot water: The role of thermal springs in facilitating invasion of tropical species
Quenton M. Tuckett, Katelyn M. Lawson, Taylor N. Lipscomb, Jeffrey E. Hill, Wesley M. Daniel, Zachary A. Siders
2021, Hydrobiologia (848) 4731-4745
Livebearers in the family Poeciliidae are some of the most widely introduced fishes. Native poeciliid translocations within the U.S. are mostly due to deliberate stocking for mosquito control. Introductions of exotic poeciliids, those not native to the U.S., are more likely to be due to release...
Diel patterns of pheromone release by male sea lamprey
Skye D. Fissette, Ugo Bussy, Belinda Huerta, Cory O. Brant, Ke Li, Nicholas S. Johnson, Weiming Li
2021, Integrative and Comparative Biology (61) 1795-1810
Costs to producing sexual signals can create selective pressures on males to invest signaling effort in particular contexts. When the benefits of signaling vary consistently across time, males can optimize signal investment to specific temporal contexts using biological rhythms. Sea lamprey, Petromyzon marinus, have a semelparous life history, are primarily...
Individual variation in temporal dynamics of post-release habitat selection
Simona Picardi, Nathan Ranc, Brian J. Smith, Peter S. Coates, Steven R. Mathews, David K. Dahlgren
2021, Frontiers in Conservation Science (2)
Translocated animals undergo a phase of behavioral adjustment after being released in a novel environment, initially prioritizing exploration and gradually shifting toward resource exploitation. This transition has been termed post-release behavioral modification. Post-release behavioral modification may also manifest as changes in habitat selection through time, and these temporal dynamics...
Small mammal shooting as a conduit for lead exposure in avian scavengers
Garth Herring, Collin A. Eagles-Smith, John Goodell, Jeremy A. Buck, James Willacker
2021, Environmental Science and Technology (55) 12272-12280
Lead (Pb) exposure is a widespread wildlife conservation threat. Although commonly associated with Pb-based ammunition from big-game hunting, small mammals (e.g., ground squirrels) shot for recreational or pest-management purposes represent a potentially important Pb vector in agricultural regions. We measured the responses of avian scavengers to pest-shooting events and examined...
Unexpected diversity of Endozoicomonas in deep-sea corals
Christina A. Kellogg, Zoe A. Pratte
2021, Marine Ecology Progress Series (673) 1-15
ABSTRACT: The deep ocean hosts a large diversity of azooxanthellate cold-water corals whose associated microbiomes remain to be described. While the bacterial genus Endozoicomonas has been widely identified as a dominant associate of tropical and temperate corals, it has rarely been detected in deep-sea corals. Determining microbial baselines for these cold-water...
Historical changes in plant water use and need in the continental United States
Michael T Terck, David Thoma, John E. Gross, Kirk R. Sherrill, Stefanie Kagone, Gabriel B. Senay
2021, PLoS ONE (16)
A robust method for characterizing the biophysical environment of terrestrial vegetation uses the relationship between Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD). These variables are usually estimated from a water balance model rather than measured directly and are often more representative of ecologically-significant changes than...
Insect-mediated contaminant flux at the land–water interface: Are ecological subsidies driving exposure or is exposure driving subsidies?
Johanna M. Kraus, Jeff S. Wesner, David Walters
2021, Environmental Toxicology and Chemistry (40) 2953-2958
Chemical contamination of freshwaters is a global problem. In the United States alone, millions of kilometers of rivers and hectares of lakes and wetlands are impaired from contamination by chemicals including mercury, pesticides, polychlorinated biphenyls (PCBs), and trace metals (US Environmental Protection Agency, 2017). Efforts to mitigate the risks of contamination...
Modelling tilt noise caused by atmospheric processes at long periods for several horizontal seismometers at BFO—A reprise
W. Zurn, T. Forbriger, R. Widmer-Schnidrig, P. Duffner, Adam T. Ringler
2021, Geophysical Journal International (228) 927-943
Tilting of the ground due to loading by the variable atmosphere is known to corrupt very long period horizontal seismic records (below 10 mHz) even at the quietest stations. At BFO (Black Forest Observatory, SW-Germany), the opportunity arose to study these disturbances on a variety of simultaneously operated state-of-the-art...
Precipitation-runoff processes in the Merced River Basin, Central California, with prospects for streamflow predictability, water years 1952–2013
Kathryn M. Koczot, John C. Risley, JoAnn M. Gronberg, John M. Donovan, Kelly R. McPherson
2021, Scientific Investigations Report 2020-5150
The U.S. Geological Survey, in cooperation with the California Department of Water Resources (DWR), has constructed a new spatially detailed Precipitation-Runoff Modeling System (PRMS) model for the Merced River Basin, California, which is a tributary of the San Joaquin River in California. Operated through an Object User Interface (OUI) with...
Occurrence, fate, and transport of aerially applied herbicides to control invasive buffelgrass within Saguaro National Park Rincon Mountain District, Arizona, 2015–18
Nicholas V. Paretti, Kimberly R. Beisner, Bruce Gungle, Michael T. Meyer, Bethany K. Kunz, Edyth Hermosillo, Jay R. Cederberg, Justine P. Mayo
2021, Scientific Investigations Report 2021-5039
The spread of the invasive and fire-adapted buffelgrass (Cenchrus ciliaris L.) threatens desert ecosystems by competing for resources, increasing fuel loads, and creating wildfire connectivity. The Rincon Mountain District of Saguaro National Park addressed this natural resource threat with the use of glyphosate-based herbicides (GBHs). In 2010, the Rincon Mountain...
What do you mean by false positive?
John A. Darling, Christopher L. Jerde, Adam Sepulveda
2021, Environmental DNA (3) 879-883
Misunderstandings regarding the term “false positive” present a significant hurdle to broad adoption of eDNA monitoring methods. Here, we identify three challenges to clear communication of false-positive error between scientists, managers, and the public. The first arises from a failure to distinguish between false-positive eDNA detection at the sample level...
Incorporating uncertainty into groundwater salinity mapping using AEM data
Lyndsay B. Ball, Burke J. Minsley
2021, Conference Paper, First international meeting for applied geoscience & energy expanded abstracts
Airborne electromagnetic surveys provide spatially extensive resistivity information that can be useful for groundwater salinity mapping; however, the transformation from geophysical data to salinity interpretations carries uncertainty. We compare two quantitative approaches to salinity mapping recently applied to address water resource management objectives: the location of the depth to the...
G-LiHT user guide
Bradford Wirt
2021, Book
No abstract available....
LakeEnsemblR: An R package that facilitates ensemble modelling of lakes
Tadhg N. Moore, Jorrit P. Mesman, Robert Ladwig, Johannes Feldbauer, Freya Olsson, Rachel M. Pilla, Tom Shatwell, Jason J. Venkiteswaran, Austin D. Delany, Hilary Dugan, Kevin C. Rose, Jordan Read
2021, Environmental Modelling & Software (143)
Model ensembles have several benefits compared to single-model applications but are not frequently used within the lake modelling community. Setting up and running multiple lake models can be challenging and time consuming, despite the many similarities between the existing models (forcing data, hypsograph, etc.). Here we present an R package,...
Aquatic-terrestrial linkages control metabolism and carbon dynamics in a mid-sized, urban stream influenced by snowmelt
Ariel P. Reed, Edward G. Stets, Sheila F. Murphy, Emily Mullins
2021, Journal of Geophysical Research Biogeosciences (126)
Freshwater streams can exchange nutrients and carbon with the surrounding terrestrial environment through various mechanisms including physical erosion, flooding, leaf drop, and snowmelt. These aquatic-terrestrial interactions are crucial in carbon mobilization, transformation, ecosystem productivity, and have important implications for the role of freshwater ecosystems in the global carbon budget. We...
Redefining the age of the lower Colorado River, southwestern United States: Comment
Rebecca J. Dorsey, Gary J. Axen, Martin J. Grove, Bernard Housen, George Jefferson, Kristin McDougall-Reid, Lyndon Murray, Michael E. Oskin, Tom Peryam, Jolante W. van Wijk, Elaine Young
2021, Geology (49)
No abstract available....
Field methods for translocating female greater sage-grouse (Centrocercus urophasianus) with their broods
Mary Beth Meyerpeter, Kade D. Lazenby, Peter S. Coates, Mark A. Ricca, Steven R. Mathews, Scott C. Gardner, David K. Dahlgren, David J. Delehanty
2021, Wildlife Society Bulletin (45) 529-537
Greater sage-grouse (Centrocercus urophasianus) have experienced considerable range contraction and reduced abundance in response to habitat loss and degradation. Translocation is a conservation action that is often used to reintroduce extirpated populations or augment existing small populations. Translocations have had limited success in restoring viable populations of sage-grouse; a lack...
Food, culture and climate
Ariela Zycherman, Emily Brooks, Amber Campbell, Brianna Farber, Matthew David Jurjonas, Austin Scheetz
2021, Report
The Social Sciences Coordinating Committee (SSCC) is one of multiple Interagency Groups that support the U.S. Global Change Research Program (USGCRP). USGCRP began as a Presidential initiative in 1989 and was mandated by Congress through the U.S. Global Change Research Act of 1990 “to assist the Nation and the world...
Seasonal and age-related variation in daily travel distances of California Condors
Jonathan C. Hall, Insu Hong, Sharon A. Poessel, Melissa A. Braham, Joseph Brandt, Joseph Burnett, Todd E. Katzner
2021, Journal of Raptor Research (55) 388-398
Despite a dramatic recovery from the brink of extinction, California Condors (Gymnogyps californianus) still face significant anthropogenic threats. Although condor movement patterns across large temporal scales are understood, less is known about their movements on a fine temporal scale. We used a trajectory-based analysis of GPS telemetry data gathered from...
Redefining the age of the lower Colorado River, southwestern United States: Reply
Ryan S. Crow, Jonathan Schwing, Karl Karlstrom, Matt Heizler, Philip Pearthree, Kyle House, Shannon Dulin, Susane Janecke, Mark E. Stelten, Laurie Crossey
2021, Geology (49) e532-e533
Crow et al. (2021) report new geochronologic and paleomagnetic data indicating that the lower Colorado River (CR) became integrated to the proto–Gulf of California (GOC) between 4.8 and 4.62 Ma instead of at ca. 5.3 Ma, as suggested by Dorsey et al. (2007, 2018). Dorsey et al. (2021) dispute this...
Meter-scale lithofacies cycle and controls on variations in oil saturation, Wolfcamp A, Delaware and Midland Basins
Tongwei Zhang, Qilong Fu, Xun Sun, Paul C. Hackley, Lucy Tingwei Ko, Deyong Shao
2021, AAPG Bulletin (105) 1821-1846
Typical meter-scale lithofacies cycles from the Wolfcamp A in the Delaware and Midland Basins comprise basal carbonate facies overlain by calcareous or siliceous mudrocks. Siliceous mudstones are the most organic-rich facies with high total organic carbon (TOC > 3 wt. %), whereas thin carbonate beds have the lowest organic matter...
Strategic considerations for invasive species managers in the utilization ofenvironmental DNA (eDNA): Steps for incorporating this powerful surveillance tool
Jeffrey Morisette, Stanley Burgiel, Kelsey Brantley, Wesley M. Daniel, John Darling, Jeanette Davis, Thomas W. Franklin, Keith Gaddis, Margaret Hunter, Richard Lance, Tracy Leskey, Yale Passamaneck, Antoinette J. Piaggio, Brian G. Rector, Adam Sepulveda, Melissa Smith, Carol A Stepien, Taylor Wilcox
2021, Management of Biological Invasions (12) 747-775
Invasive species surveillance programs can utilize environmental DNA sampling and analysis to provide information on the presence of invasive species. Wider utilization of eDNA techniques for invasive species surveillance may be warranted. This paper covers topics directed towards invasive species managers and eDNA practitioners working at the intersection of eDNA...
Developing bare-earth digital elevation models from structure-from-motion data on barrier islands
Nicholas Enwright, Christine J. Kranenburg, Brett Patton, P. Soupy Dalyander, Jenna A. Brown, Sarai Piazza, Wyatt C Cheney
2021, ISPRS Journal of Photogrammetry and Remote Sensing (180) 269-282
Unoccupied aerial systems can collect aerial imagery that can be used to develop structure-from-motion products with a temporal resolution well-suited to monitoring dynamic barrier island environments. However, topographic data created using photogrammetric techniques such as structure-from-motion represent the surface elevation including the vegetation canopy. Additional processing is required for estimating bare-earth elevation, which...
Wetland availability and salinity concentrations for breeding waterfowl in Suisun Marsh, California
Carley Rose Schacter, Sarah H. Peterson, Mark P. Herzog, C. Alex Hartman, Michael L. Casazza, Joshua T. Ackerman
2021, San Francisco Estuary and Watershed Science (19)
Availability of wetlands with low salinities during the breeding season can influence waterfowl reproductive success and population recruitment. Salinities as low as 2 ppt (3.6 mScm–1) can impair duckling growth and influence behavior, with mortality occurring above 9 ppt (14.8 mScm–1). We used satellite imagery to quantify the amount of available water, and sampled...