A model to locate potential areas for lake sturgeon spawning habitat construction in the St. Clair–Detroit River System
David Bennion, Bruce A. Manny
2014, Journal of Great Lakes Research (40) 43-51
In response to a need for objective scientific information that could be used to help remediate loss of fish spawning habitat in the St. Clair River and Detroit River International Areas of Concern, this paper summarizes a large-scale geographic mapping investigation. Our study integrates data on two variables that many...
Designing long-term fish community assessments in connecting channels: Lessons from the Saint Marys River
Jeff Schaeffer, Mark W. Rogers, David G. Fielder, Neal Godby, Anjanette K. Bowen, Lisa O'Connor, Josh Parrish, Susan Greenwood, Stephen Chong, Greg Wright
2014, Journal of Great Lakes Research (40) 15-22
Long-term surveys are useful in understanding trends in connecting channel fish communities; a gill net assessment in the Saint Marys River performed periodically since 1975 is the most comprehensive connecting channels sampling program within the Laurentian Great Lakes. We assessed efficiency of that survey, with intent to inform development of...
Accounting for imperfect detection and survey bias in statistical analysis of presence-only data
Robert M. Dorazio
2014, Global Ecology and Biogeography (23) 1472-1484
Aim During the past decade ecologists have attempted to estimate the parameters of species distribution models by combining locations of species presence observed in opportunistic surveys with spatially referenced covariates of occurrence. Several statistical models have been proposed for the analysis of presence-only data, but these models have largely ignored the...
Raptor abundance and northern bobwhite survival and habitat use
J. Turner, F. Hernandez, Clint W. Boal, Bart M. Ballard, Fred C. Bryant, D.B. Wester
2014, Wildlife Society Bulletin (38) 689-696
Predation risk has a profound influence on prey behavior and habitat use. The Rio Grande Plains ecoregion of Texas, USA, provides a unique opportunity to investigate changes in prey behavior because the ecoregion experiences a high influx of raptors every year during autumn migration. We used an 8-year...
A 21-year study of seasonal and interspecific variation of hatchling emergence in a nearctic freshwater turtle community: to overwinter or not to overwinter?
Jeffrey E. Lovich, Carl H. Ernst, Evelyn M. Ernst, Julia L. Riley
2014, Herpetological Monographs (28) 93-109
Hatchling emergence patterns were studied in a community of six species of freshwater turtles in Lancaster County, Pennsylvania, U.S.A. including: Chelydra serpentina, Chrysemys picta, Clemmys guttata, Glyptemys insculpta, G. muhlenbergii, and Sternotherus odoratus. Data were collected every year from 1965 to 1985 on estimated date of emergence, carapace length, April...
Geologic implications of gas hydrates in the offshore of India: Krishna-Godavari Basin, Mahanadi Basin, Andaman Sea, Kerala-Konkan Basin
Pushpendra Kumar, Timothy S. Collett, Ray Boswell, James R. Cochran, Malcolm Lall, Aninda Mazumdar, Mangipudi Venkata Ramana, Tammisetti Ramprasad, Michael Riedel, Kalachand Sain, Arun Vasant Sathe, Krishna Vishwanath, U.S. Yadav
2014, Marine and Petroleum Geology (58) 29-98
Gas hydrate resource assessments that indicate enormous global volumes of gas present within hydrate accumulations have been one of the primary driving forces behind the growing interest in gas hydrates. Gas hydrate volumetric estimates in recent years have focused on documenting the geologic parameters in the “gas hydrate petroleum system”...
Oil source-fingerprinting in support of polarimetric radar mapping of Macondo-252 oil in Gulf Coast marshes
Elijah W. Ramsey III, Buffy M. Meyer, Amina Rangoonwala, Edward Overton, Cathleen E. Jones, Terri Bannister
2014, Marine Pollution Bulletin (89) 85-95
Polarimetric synthetic aperture radar (PolSAR) data exhibited dramatic, spatially extensive changes from June 2009 to June 2010 in Barataria Bay, Louisiana. To determine whether these changes were associated with the Deepwater Horizon (DWH) oil spill, twenty-nine sediment samples were collected in 2011 from shoreline and nearshore–interior coastal marsh locations where oil was...
Disease dynamics during wildlife translocations: disruptions to the host population and potential consequences for transmission in desert tortoise contact networks
Christina M. Aiello, Kenneth E. Nussear, Andrew D. Walde, Todd C. Esque, Patrick G. Emblidge, Pratha Sah, S. Bansal, Peter J. Hudson
2014, Animal Conservation (17) 27-39
Wildlife managers consider animal translocation a means of increasing the viability of a local population. However, augmentation may disrupt existing resident disease dynamics and initiate an outbreak that would effectively offset any advantages the translocation may have achieved. This paper examines fundamental concepts of disease ecology and identifies the conditions...
Simultaneous Gaussian and exponential inversion for improved analysis of shales by NMR relaxometry
Kathryn E. Washburn, Endre Anderssen, Sarah J. Vogt, Joseph D. Seymour, Justin E. Birdwell, Catherine M. Kirkland, Sarah L. Codd
2014, Journal of Magnetic Resonance (250) 7-16
Nuclear magnetic resonance (NMR) relaxometry is commonly used to provide lithology-independent porosity and pore-size estimates for petroleum resource evaluation based on fluid-phase signals. However in shales, substantial hydrogen content is associated with solid and fluid signals and both may be detected. Depending on the motional regime, the signal from the...
A visualization tool to support decision making in environmental and biological planning
Stephanie S. Romañach, Mark McKelvy, Craig Conzelmann, Kevin J. Suir
2014, Environmental Modelling and Software (62) 221-229
Large-scale ecosystem management involves consideration of many factors for informed decision making. The EverVIEW Data Viewer is a cross-platform desktop decision support tool to help decision makers compare simulation model outputs from competing plans for restoring Florida's Greater Everglades. The integration of NetCDF metadata conventions into EverVIEW allows end-users from...
Identifying monitoring gaps for amphibian populations in a North American biodiversity hotspot, the southeastern USA
Susan C. Walls
2014, Biodiversity and Conservation (23) 3341-3357
I review the primary literature to ascertain the status of amphibian monitoring efforts in the southeastern USA, a “hotspot” for biodiversity in North America. This effort revealed taxonomic, geographic and ecological disparities in studies of amphibian populations in this region. Of the species of anurans and caudates known to occur...
A comparison of passive and active acoustic sampling for a bat community impacted by White-nose syndrome
Laci S. Coleman, W. Mark Ford, Christopher A. Dobony, Eric R. Britzke
2014, Journal of Fish and Wildlife Management (5) 217-226
In the summers of 2011 and 2012, we compared passive and active acoustic sampling for bats at 31 sites at Fort Drum Military Installation, New York. We defined active sampling as acoustic sampling that occurred in 30-min intervals between the hours of sunset and 0200 with a user present to...
Estimating true instead of apparent survival using spatial Cormack-Jolly-Seber models
Michael Schaub, J. Andrew Royle
2014, Methods in Ecology and Evolution (5) 1316-1326
Survival is often estimated from capture–recapture data using Cormack–Jolly–Seber (CJS) models, where mortality and emigration cannot be distinguished, and the estimated apparent survival probability is the product of the probabilities of true survival and of study area fidelity. Consequently, apparent survival is lower than true survival unless study area fidelity...
Widespread gas hydrate instability on the upper U.S. Beaufort margin
Benjamin J. Phrampus, Matthew J. Hornbach, Carolyn D. Ruppel, Patrick E. Hart
2014, Journal of Geophysical Research B: Solid Earth (119) 8594-8609
The most climate-sensitive methane hydrate deposits occur on upper continental slopes at depths close to the minimum pressure and maximum temperature for gas hydrate stability. At these water depths, small perturbations in intermediate ocean water temperatures can lead to gas hydrate dissociation. The Arctic Ocean has experienced more dramatic warming...
What do we gain from simplicity versus complexity in species distribution models?
Cory Merow, Matthew J. Smith, Thomas C. Edwards Jr., Antoine Guisan, Sean M. McMahon, Signe Normand, Wilfried Thuiller, Rafael O. Wuest, Niklaus E. Zimmermann, Jane Elith
2014, Ecography (37) 1267-1281
Species distribution models (SDMs) are widely used to explain and predict species ranges and environmental niches. They are most commonly constructed by inferring species' occurrence–environment relationships using statistical and machine-learning methods. The variety of methods that can be used to construct SDMs (e.g. generalized linear/additive models, tree-based models, maximum entropy,...
Eruptions at Lone Star geyser, Yellowstone National Park, USA: 2. Constraints on subsurface dynamics
Jean Vandemeulebrouck, Robert A. Sohn, Maxwell L. Rudolph, Shaul Hurwitz, Michael Manga, Malcolm J.S. Johnston, S. Adam Soule, Darcy McPhee, Jonathan M. G. Glen, Leif Karlstrom, Fred Murphy
2014, Journal of Geophysical Research B: Solid Earth (119) 8688-8707
We use seismic, tilt, lidar, thermal, and gravity data from 32 consecutive eruption cycles of Lone Star geyser in Yellowstone National Park to identify key subsurface processes throughout the geyser's eruption cycle. Previously, we described measurements and analyses associated with the geyser's erupting jet dynamics. Here we show that seismicity...
Volcanology: Lessons learned from Synthetic Aperture Radar imagery
Virginie Pinel, Michael P. Poland, Andrew Hooper
2014, Journal of Volcanology and Geothermal Research (289) 81-113
Twenty years of continuous Earth observation by satellite SAR have resulted in numerous new insights into active volcanism, including a better understanding of subsurface magma storage and transport, deposition of volcanic materials on the surface, and the structure and development of volcanic edifices. This massive archive of data has resulted...
Predicting occupancy for pygmy rabbits in Wyoming: an independent evaluation of two species distribution models
Steve Germaine, Drew Ignizio, Doug Keinath, Holly Copeland
2014, Journal of Fish and Wildlife Management (5) 298-314
Species distribution models are an important component of natural-resource conservation planning efforts. Independent, external evaluation of their accuracy is important before they are used in management contexts. We evaluated the classification accuracy of two species distribution models designed to predict the distribution of pygmy rabbit Brachylagus idahoensis habitat in southwestern Wyoming, USA....
Characterizing riverbed sediment using high-frequency acoustics 1: spectral properties of scattering
Daniel D. Buscombe, Paul E. Grams, Matthew A. Kaplinski
2014, Journal of Geophysical Research F: Earth Surface (119) 2674-2691
Bed-sediment classification using high-frequency hydro-acoustic instruments is challenging when sediments are spatially heterogeneous, which is often the case in rivers. The use of acoustic backscatter to classify sediments is an attractive alternative to analysis of topography because it is potentially sensitive to grain-scale roughness. Here, a new method is presented...
Characterizing riverbed sediment using high-frequency acoustics 2: scattering signatures of Colorado River bed sediment in Marble and Grand Canyons
Daniel D. Buscombe, Paul E. Grams, Matthew A. Kaplinski
2014, Journal of Geophysical Research F: Earth Surface (119) 2692-2710
In this, the second of a pair of papers on the statistical signatures of riverbed sediment in high-frequency acoustic backscatter, spatially explicit maps of the stochastic geometries (length- and amplitude-scales) of backscatter are related to patches of riverbed surfaces composed of known sediment types, as determined by geo-referenced underwater video...
On the effects of scale for ecosystem services mapping
Adrienne Gret-Regamey, Bettina Weibel, Kenneth J. Bagstad, Marika Ferrari, Davide Geneletti, Hermann Klug, Uta Schirpke, Ulrike Tappeiner
2014, PLoS ONE (9)
Ecosystems provide life-sustaining services upon which human civilization depends, but their degradation largely continues unabated. Spatially explicit information on ecosystem services (ES) provision is required to better guide decision making, particularly for mountain systems, which are characterized by vertical gradients and isolation with high topographic complexity, making them particularly sensitive...
The future of nearshore processes research
Nicole A. Elko, Falk Feddersen, Diane Foster, Cheryl J. Hapke, Jesse E. McNinch, Ryan P. Mulligan, H. Tuba Ozkan-Haller, Nathaniel G. Plant, Britt Raubenheimer, editor(s)
2014, Report
The nearshore is the transition region between land and the continental shelf including (from onshore to offshore) coastal plains, wetlands, estuaries, coastal cliffs, dunes, beaches, surf zones (regions of wave breaking), and the inner shelf (Figure ES-1). Nearshore regions are vital to the national economy, security, commerce, and recreation. The...
Mark-resight abundance estimation under incomplete identification of marked individuals
Brett T. McClintock, Jason M. Hill, Lowell Fritz, Kathryn Chumbley, Katie Luxa, Duane R. Diefenbach
2014, Methods in Ecology and Evolution (5) 1294-1304
Often less expensive and less invasive than conventional mark–recapture, so-called 'mark-resight' methods are popular in the estimation of population abundance. These methods are most often applied when a subset of the population of interest is marked (naturally or artificially), and non-invasive sighting data can be simultaneously collected...
Hidden Markov model for dependent mark loss and survival estimation
Jeffrey L. Laake, Devin S. Johnson, Duane R. Diefenbach, Mark A. Ternent
2014, Journal of Agricultural, Biological, and Environmental Statistics (19) 522-538
Mark-recapture estimators assume no loss of marks to provide unbiased estimates of population parameters. We describe a hidden Markov model (HMM) framework that integrates a mark loss model with a Cormack–Jolly–Seber model for survival estimation. Mark loss can be estimated with single-marked animals as long as a sub-sample of animals...
Temporal and spatial changes in golden eagle reproduction in relation to increased off highway vehicle activity
Karen Steenhof, Jessi L. Brown, Michael N. Kochert
2014, Wildlife Society Bulletin (38) 682-688
We used >40 years of data on golden eagles (Aquila chrysaetos) nesting in southwestern Idaho, USA, to assess whether the proportion of territories and pairs producing young has changed over time, and whether territories in areas where off highway vehicle (OHV) use has increased significantly were less likely to be...