Northeast regional and state trends in anuran occupancy from calling survey data (2001-2011) from the North American Amphibian Monitoring Program
Linda A. Weir, J. Andrew Royle, Kimberly D. Gazenski, Oswaldo Villena Carpio
2014, Herpetological Conservation and Biology (9) 223-245
We present the first regional trends in anuran occupancy from North American Amphibian Monitoring Program (NAAMP) data from 11 northeastern states using an 11 years of data. NAAMP is a long-term monitoring program where observers collect data at assigned random roadside routes using a calling survey technique. We assessed occupancy...
Modelling landscape-scale erosion potential related to vehicle disturbances along the U.S.-Mexico border
Miguel L. Villarreal, Robert H. Webb, Laura M. Norman, Jennifer L. Psillas, Abigail S. Rosenberg, Shinji Carmichael, Roy E. Petrakis, Philip E. Sparks
2014, Land Degradation and Development (27) 1106-1121
Decades of intensive off-road vehicle use for border security, immigration, smuggling, recreation, and military training along the USA–Mexico border have prompted concerns about long-term human impacts on sensitive desert ecosystems. To help managers identify areas susceptible to soil erosion from anthropogenic activities, we developed a series of erosion potential models...
California State Waters Map Series — Offshore of Half Moon Bay, California
Guy R. Cochrane, Peter Dartnell, H. Gary Greene, Samuel Y. Johnson, Nadine E. Golden, Stephen R. Hartwell, Bryan E. Dieter, Michael W. Manson, Ray W. Sliter, Stephanie L. Ross, Janet Watt, Charles A. Endris, Rikk G. Kvitek, Eleyne L. Phillips, Mercedes D. Erdey, John L. Chin, Carrie K. Bretz
2014, Open-File Report 2014-1214
In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California’s State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration,...
Late Holocene sedimentary environments of south San Francisco Bay, California, illustrated in gravity cores
Donald L. Woodrow, Theresa A. Fregoso, Florence L. Wong, Bruce E. Jaffe
2014, Open-File Report 2014-1198
Data are reported here from 51 gravity cores collected from the southern part of San Francisco Bay by the U.S. Geological Survey in 1990. The sedimentary record in the cores demonstrates a stable geographic distribution of facies and spans a few thousand years. Carbon-14 dating of the sediments suggests that...
Population age and initial density in a patchy environment affect the occurrence of abrupt transitions in a birth-and-death model of Taylor's law
Jiang Jiang, Donald L. DeAngelis, B. Zhang, J.E. Cohen
2014, Ecological Modelling (289) 59-65
Taylor's power law describes an empirical relationship between the mean and variance of population densities in field data, in which the variance varies as a power, b, of the mean. Most studies report values of b varying between 1 and 2. However, Cohen (2014a) showed recently that smooth changes in...
Updated study reporting levels (SRLs) for trace-element data collected for the California Groundwater Ambient Monitoring and Assessment (GAMA) Priority Basin Project, October 2009-March 2013
Tracy A. Davis, Lisa D. Olsen, Miranda S. Fram, Kenneth Belitz
2014, Scientific Investigations Report 2014-5105
Groundwater samples have been collected in California as part of statewide investigations of groundwater quality conducted by the U.S. Geological Survey for the Groundwater Ambient Monitoring and Assessment (GAMA) Priority Basin Project (PBP). The GAMA-PBP is being conducted in cooperation with the California State Water Resources Control Board to assess...
Identifying the pollen of an extinct spruce species in the Late Quaternary sediments of the Tunica Hills region, south-eastern United States
Luke Mander, Jacklyn Rodriguez, Pietra G. Mueller, Stephen T. Jackson, Surangi W. Punyasena
2014, Journal of Quaternary Science (29) 711-721
Late Quaternary fluvial deposits in the Tunica Hills region of Louisiana and Mississippi are rich in spruce macrofossils of the extinct species Picea critchfieldii, the one recognized plant extinction of the Late Quaternary. However, the morphology of P. critchfieldii pollen is unknown, presenting a barrier to the interpretation of pollen spectra from the...
Relations between continuous real-time turbidity data and discrete suspended-sediment concentration samples in the Neosho and Cottonwood Rivers, east-central Kansas, 2009-2012
Guy M. Foster
2014, Open-File Report 2014-1171
The Neosho River and its primary tributary, the Cottonwood River, are the primary sources of inflow to the John Redmond Reservoir in east-central Kansas. Sedimentation rate in the John Redmond Reservoir was estimated as 743 acre-feet per year for 1964–2006. This estimated sedimentation rate is more than 80 percent larger...
Comparing bacterial community composition of healthy and dark spot-affected Siderastrea siderea in Florida and the Caribbean
Christina A. Kellogg, Yvette M. Piceno, Lauren M. Tom, Todd Z. DeSantis, Michael A. Gray, Gary L. Andersen
2014, PLoS ONE (9)
Coral disease is one of the major causes of reef degradation. Dark Spot Syndrome (DSS) was described in the early 1990's as brown or purple amorphous areas of tissue on a coral and has since become one of the most prevalent diseases reported on Caribbean reefs. It has been identified...
Habitat prioritization across large landscapes, multiple seasons, and novel areas: an example using greater sage-grouse in Wyoming
Bradley C. Fedy, Kevin E. Doherty, Cameron L. Aldridge, Michael S. O’Donnell, Jeffrey L. Beck, Bryan Bedrosian, David Gummer, Matthew J. Holloran, Gregory D. Johnson, Nicholas W. Kaczor, Christopher P. Kirol, Cheryl A. Mandich, David Marshall, Gwyn McKee, Chad Olson, Aaron C. Pratt, Christopher C. Swanson, Brett L. Walker
2014, Wildlife Monographs (190) 1-39
Animal habitat selection is an important and expansive area of research in ecology. In particular, the study of habitat selection is critical in habitat prioritization efforts for species of conservation concern. Landscape planning for species is happening at ever-increasing extents because of the appreciation for the role of landscape-scale patterns...
Water-level altitudes 2014 and water-level changes in the Chicot, Evangeline, and Jasper aquifers and compaction 1973-2013 in the Chicot and Evangeline aquifers, Houston-Galveston region, Texas
Mark C. Kasmarek, Michaela R. Johnson, Jason K. Ramage
2014, Scientific Investigations Map 3308
Most of the land-surface subsidence in the Houston-Galveston region, Texas, has occurred as a direct result of groundwater withdrawals for municipal supply, commercial and industrial use, and irrigation that depressured and dewatered the Chicot and Evangeline aquifers, thereby causing compaction of the aquifer sediments, mostly in the fine-grained clay and...
An evaluation of remote sensing technologies for the detection of residual contamination at ready-for-anticipated use sites
E. Terrence Slonecker, Gary B. Fisher
2014, Open-File Report 2014-1197
Operational problems with site access and information, XRF instrument operation, and imagery collections hampered the effective data collection and analysis process. Of the 24 sites imaged and analyzed, 17 appeared to be relatively clean with no discernible metal contamination, hydrocarbons, or asbestos in the soil. None of the samples for...
Comparing species distribution models constructed with different subsets of environmental predictors
David N. Bucklin, Mathieu Basille, Allison M. Benscoter, Laura A. Brandt, Frank J. Mazzotti, Stephanie S. Romañach, Carolina Speroterra, James I. Watling
2014, Diversity and Distributions (21) 23-35
Aim To assess the usefulness of combining climate predictors with additional types of environmental predictors in species distribution models for range-restricted species, using common correlative species distribution modelling approaches. Location Florida, USA Methods We used five different algorithms to create distribution models for 14 vertebrate species, using seven different predictor sets: two with bioclimate predictors...
Documentation of a groundwater flow model (SJRRPGW) for the San Joaquin River Restoration Program study area, California
Jonathan A. Traum, Steven P. Phillips, George L. Bennett V, Celia Zamora, Loren F. Metzger
2014, Scientific Investigations Report 2014-5148
To better understand the potential effects of restoration flows on existing drainage problems, anticipated as a result of the San Joaquin River Restoration Program (SJRRP), the U.S. Geological Survey (USGS), in cooperation with the U.S. Bureau of Reclamation (Reclamation), developed a groundwater flow model (SJRRPGW) of the SJRRP study area...
Methane hydrates in nature - Current knowledge and challenges
Timothy S. Collett
2014, Journal of Chemical and Engineering Data (60) 319-329
Recognizing the importance of methane hydrate research and the need for a coordinated effort, the United States Congress enacted the Methane Hydrate Research and Development Act of 2000. At the same time, the Ministry of International Trade and Industry in Japan launched a research program to develop plans for a...
Simulation of groundwater flow and the interaction of groundwater and surface water in the Willamette Basin and Central Willamette subbasin, Oregon
Nora B. Herrera, Erick R. Burns, Terrence D. Conlon
2014, Scientific Investigations Report 2014-5136
Full appropriation of tributary streamflow during summer, a growing population, and agricultural needs are increasing the demand for groundwater in the Willamette Basin. Greater groundwater use could diminish streamflow and create seasonal and long-term declines in groundwater levels. The U.S. Geological Survey (USGS) and the Oregon Water Resources Department (OWRD)...
Seasonal weather patterns drive population vital rates and persistence in a stream fish
Yoichiro Kanno, Benjamin Letcher, Nathaniel P. Hitt, David A. Boughton, John E. B. Wofford, Elise Zipkin
2014, Global Change Biology (21) 1856-1870
Climate change affects seasonal weather patterns, but little is known about the relative importance of seasonal weather patterns on animal population vital rates. Even when such information exists, data are typically only available from intensive fieldwork (e.g., mark–recapture studies) at a limited spatial extent. Here, we investigated effects of seasonal...
A cross-validation package driving Netica with python
Michael N. Fienen, Nathaniel G. Plant
2014, Environmental Modelling and Software (63) 14-23
Bayesian networks (BNs) are powerful tools for probabilistically simulating natural systems and emulating process models. Cross validation is a technique to avoid overfitting resulting from overly complex BNs. Overfitting reduces predictive skill. Cross-validation for BNs is known but rarely implemented due partly to a lack of software tools designed to...
Avian influenza virus ecology in Iceland shorebirds: intercontinental reassortment and movement
Jeffrey S. Hall, Gunnar Thor Hallgrimsson, Kamol Suwannanarn, Srinand Sreevatsen, S. Ip, Joshua L. TeSlaa, Sean W. Nashold, Robert J. Dusek
2014, Infection, Genetics and Evolution (28) 130-136
Shorebirds are a primary reservoir of avian influenza viruses (AIV). We conducted surveillance studies in Iceland shorebird populations for 3 years, documenting high serological evidence of AIV exposure in shorebirds, primarily in Ruddy Turnstones (Arenaria interpres; seroprevalence = 75%). However, little evidence of virus infection was found in these shorebird...
Hydrogeologic framework and occurrence, movement, and chemical characterization of groundwater in Dixie Valley, west-central Nevada
Jena M. Huntington, C. Amanda Garcia, Michael R. Rosen
2014, Scientific Investigations Report 2014-5152
Dixie Valley, a primarily undeveloped basin in west-central Nevada, is being considered for groundwater exportation. Proposed pumping would occur from the basin-fill aquifer. In response to proposed exportation, the U.S. Geological Survey, in cooperation with the Bureau of Reclamation and Churchill County, conducted a study to improve the understanding of...
Groundwater discharge by evapotranspiration, Dixie Valley, west-central Nevada, March 2009-September 2011
C. Amanda Garcia, Jena M Huntington, Susan G. Buto, Michael T. Moreo, J. LaRue Smith, Brian J. Andraski
2014, Professional Paper 1805
With increasing population growth and land-use change, urban communities in the desert Southwest are progressively looking toward remote basins to supplement existing water supplies. Pending applications by Churchill County for groundwater appropriations from Dixie Valley, Nevada, a primarily undeveloped basin east of the Carson Desert, have prompted a reevaluation of...
Quality of surface-water supplies in the Triangle area of North Carolina, water year 2009
C. A. Pfeifle, M. J. Giorgino, R. B. Rasmussen
2014, Open-File Report 2014-1192
Surface-water supplies are important sources of drinking water for residents in the Triangle area of North Carolina, which is located within the upper Cape Fear and Neuse River Basins. Since 1988, the U.S. Geological Survey and a consortium of governments have tracked water-quality conditions and trends in several of the...
Assessment of the spatial extent and height of flooding in Lake Champlain during May 2011, using satellite remote sensing and ground-based information
David M. Bjerklie, Thomas J. Trombley, Scott A. Olson
2014, Scientific Investigations Report 2014-5163
Landsat 5 and moderate resolution imaging spectro-radiometer satellite imagery were used to map the area of inundation of Lake Champlain, which forms part of the border between New York and Vermont, during May 2011. During this month, the lake’s water levels were record high values not observed in the previous...
Concentration and flux of total and dissolved phosphorus, total nitrogen, chloride, and total suspended solids for monitored tributaries of Lake Champlain, 1990-2012
Laura Medalie
2014, Open-File Report 2014-1209
Annual and daily concentrations and fluxes of total and dissolved phosphorus, total nitrogen, chloride, and total suspended solids were estimated for 18 monitored tributaries to Lake Champlain by using the Weighted Regressions on Time, Discharge, and Seasons regression model. Estimates were made for 21 or 23 years, depending on data...
Estimates of vital rates for a declining loggerhead turtle (Caretta caretta) subpopulation: implications for management
Margaret M. Lamont, Ikuko Fujisaki, Raymond R. Carthy
2014, Marine Biology (161) 2659-2668
Because subpopulations can differ geographically, genetically and/or phenotypically, using data from one subpopulation to derive vital rates for another, while often unavoidable, is not optimal. We used a two-state open robust design model to analyze a 14-year dataset (1998–2011) from the St. Joseph Peninsula, Florida (USA; 29.748°, −85.400°) which is...