It's about time: A multistate semicontinuous time mark–recapture model to evaluate seasonal survival and movement rates of juvenile Coho Salmon in a small coastal watershed
Nicholas P. Van Vleet, Darren Ward, Nicholas A. Som, Daniel C. Barton, Colin Anderson, Mark J. Henderson
2024, Transactions of the American Fisheries Society (153) 541-558
ObjectiveMany mark–recapture models assume that releases and recaptures are discrete events, and researchers often aggregate continuous recapture data (e.g., passive integrated transponder [PIT] detections) into coarse temporal scales to satisfy this assumption. This temporal discretization could result in parameter biases by ignoring the individual heterogeneity in the...
Mapping eelgrass cover and biomass at Izembek Lagoon, Alaska, using in-situ field data and Sentinel-2 satellite imagery
David C. Douglas, Michael D. Fleming, Vijay P. Patil, David H. Ward
2024, Preprint
Two eelgrass (Zostera marina) maps of Izembek Lagoon, Alaska, were generated by first creating maps of spectrally unique classes from each of two Sentinel-2 satellite images collected on July 1, 2016, and August 14, 2020, then attributing the spectral classes with information about eelgrass conditions based on field data. Maps...
Comparison of imaging flow cytometry and microscopy for freshwater algal bloom detection
Sabina R. Gifford, A. St. Amand, Jennifer L. Graham, Guy M. Foster, Cory Sauve, Denise Clark, Hannah Schroeder-Larkins
2024, Lake and Reservoir Management (40) 221-235
Imaging flow cytometry (IFC) is an emerging tool that allows for rapid identification and enumeration of phytoplankton in freshwater systems. However, few studies have assessed the effects of preservation on IFC results or compared live IFC and microscopy results in freshwater systems. Understanding the effects of preservation and...
A literature review and hypsometric analysis to support decisions on trout management flows on the Colorado River downstream from Glen Canyon Dam
Mariah Giardina, Josh Korman, Michael D. Yard, Scott Wright, Matthew A. Kaplinski, Glenn Bennett
2024, Open-File Report 2024-1033
Executive SummaryFish stranding has been studied in select rivers worldwide, often with the purpose of determining how to mitigate adverse effects of dam operations on highly valued salmon and trout populations. However, where a reduction in trout population size is desired by resource managers, as is the case downstream of...
Disentangling drivers of annual grass invasion: Abiotic susceptibility vs. fire-induced conversion to cheatgrass dominance in the sagebrush biome
Alexandra K. Urza, David I. Board, John B. Bradford, Jessi L. Brown, Daniel R. Chambers, Daniel Rodolphe Schlaepfer, Karen C. Short
2024, Biological Conservation (297)
Invasive annual grasses are often facilitated by fire, yet they can become ecologically dominant in susceptible locations even in the absence of fire. We used an extensive vegetation plot database to model susceptibility to the invasive annual grass cheatgrass (Bromus...
Downstream decreases in water availability, tree height, canopy volume and growth rate in cottonwood forests along the Green River, southwestern USA
Richard D. Thaxton, Michael L. Scott, John T. Kemper, Sara L. Rathburn, Sabrina Butzke, Jonathan M. Friedman
2024, Ecohydrology (17)
Hydrologic stress is increasing in Fremont cottonwood (Populus fremontii) forests across the southwestern United States because of increased temperature and streamflow diversion. The spatial variability of this stress is large yet poorly understood. Along the Yampa and Green Rivers in Colorado and Utah, vapour...
A protocol for assessing bias and robustness of social network metrics using GPS based radio-telemetry data
Prabhleen Kaur, Simone Ciuti, Federico Ossi, Francesca Cagnacci, Nicolas Morellet, Anne Loison, Kamal Atmeh, Philip McLoughlin, Adele K. Reinking, Jeffrey L. Beck, Anna C. Ortega, Matthew J. Kauffman, Mark S. Boyce, Amy Haigh, Anna David, Laura L. Griffin, Kimberly Conteddu, Jane Faull, Michael Salter-Townshend
2024, Article
BackgroundSocial network analysis of animal societies allows scientists to test hypotheses about social evolution, behaviour, and dynamic processes. However, the accuracy of estimated metrics depends on data characteristics like sample proportion, sample size, and frequency. A protocol is urgently needed to assess for bias and robustness of social network metrics...
Assessing potential effects of oil and gas development activities on groundwater quality near and overlying the Elk Hills and North Coles Levee Oil Fields, San Joaquin Valley, California
John G. Warden, Matthew K. Landon, Michael J. Stephens, Tracy Davis, Janice M. Gillespie, Peter B. McMahon, Justin T. Kulongoski, Andrew G. Hunt, David H. Shimabukuro, Riley Gannon, Lyndsay B. Ball
2024, PLOS Water (3)
Groundwater resources are utilized near areas of intensive oil and gas development in California’s San Joaquin Valley. In this study, we examined chemical and isotopic data to assess if thermogenic gas or saline water from oil producing formations have mixed with groundwater near the Elk Hills and North Coles Levee...
Quantifying the coastal hazard risk reduction benefits of coral reef restoration in the U.S. Virgin Islands
Camila Gaido-Lasserre, Valerie Pietsch McNulty, Curt D. Storlazzi, Borja Reguero, Denise Perez, Sandra Fogg, Kristen A. Cumming, Jessica Ward, Steve Schill, Celeste Jarvis, Michael W. Beck
2024, Report
Coastal habitat restoration, especially of coral reef ecosystems, can significantly reduce the exposure of coastal communities to natural hazards and, consequently, the risk of wave-driven flooding. Likewise, reef degradation can increase coastal flood risks to people and property. In this study, the valuation of coral reefs in the United States...
Observations of flocs in an estuary and implications for computation of settling velocity
Rachel Allen, Daniel Livsey, Samantha C. McGill
2024, Journal of Geophysical Research: Oceans (129)
The settling velocity (ws) in estuarine environments can impact whether a region is eroding or accreting sediment on the bed, yet determining this rate can be an indirect process requiring a number of assumptions. Accurate determination of ws is especially needed for numerical models to reproduce observed sediment concentrations at the appropriate...
Low-flow statistics for selected streams in New York, excluding Long Island
Timothy J. Stagnitta, Alexander P. Graziano, Joshua Woda, Robin L. Glas, Christopher L. Gazoorian
2024, Scientific Investigations Report 2024-5055
The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, updated low-streamflow statistics for New York, excluding Long Island and including hydrologically connected watersheds in bordering States, for the first time since 1972. Historical daily streamflow data for active and inactive gages were considered for...
Clustering and unconstrained ordination with Dirichlet process mixture models
Christian Stratton, Andrew Hoegh, Thomas Rodhouse, Jennifer L. Green, Katharine M. Banner, Kathryn Irvine
2024, Methods in Ecology and Evolution (15) 1720-1732
Assessment of similarity in species composition or abundance across sampled locations is a common goal in multi-species monitoring programs. Existing ordination techniques provide a framework for clustering sample locations based on species composition by projecting high-dimensional community data into a low-dimensional, latent ecological gradient representing species composition. However, these...
Current advances in coastal wetland elevation dynamics: Introduction to the special issue
Donald R. Cahoon, Glenn R. Guntenspergen
2024, Estuaries and Coasts (47) 1703-1707
The thematic issue entitled, “Current Advances in Coastal Wetland Elevation Dynamics,” draws on topics from two special sessions at the CERF 2021 conference plus additional recent research describing scientific insights gained from the Surface Elevation Table–Marker Horizon (SET–MH) method and its application across the globe to quantify and understand subsurface...
Peri-Gondwanan sediment in the Arkoma Basin derived from the north: The detrital zircon record of a uniquely concentrated non-Laurentian source signal in the late Paleozoic
Tyson Michael Smith, Marieke Dechesne, Jaime Ann Megumi Hirtz, Glenn R. Sharman, Mark R. Hudson, Brandon Michael Lutz, Neil Patrick Griffis
2024, Geosphere (20) 1286-1314
During the assembly of Pangea, peri-Gondwanan terranes collided with the eastern and southern margins of Laurentia and brought with them unique detrital zircon U-Pb signatures. Discriminating between individual peri-Gondwanan terranes in the detrital record is difficult due to their similar geologic histories. However,...
Observing systems, modeling, and forecasting
Keith Bouma-Gregson, Gregory Doucette, Jennifer L. Graham, Raphael Kudela, Beth Stauffer, Clarissa Anderson, John F. Bratton, Benjamin M. Holcomb, Kate Hubbard, Tenaya Norris, Tom Stiles, Peter J. Tango, Heather Raymond, Vanessa Zubkousky
2024, Report, Harmful algal research & response: A national environmental science strategy (HARRNESS), 2024-2034
Predicting harmful algal blooms (HABs) requires integrating physical, chemical, and biological data collected from observing networks and then assimilating these data into models, which are used to generate forecasts. In 2005, the Harmful Algal Research and Response: A National Environmental Science Strategy 2005-2015 (HARRNESS, 2005) made recommendations on how to...
Abundance and distribution of white-tailed deer on First State National Historical Park and surrounding lands
H. Brian Underwood, Madison R. Hand, Donald J. Leopold
2024, Science Report NPS/SR—2024/176
We estimated both abundance and distribution of white-tailed deer (Odocoileus virginianus) on the Brandywine Valley unit of First State National Historical Park (FRST) and the Brandywine Creek State Park (BCSP) during 2020 and 2021 with two widely used field methods — a road-based count and a network of camera traps....
Joint pilot fish habitat framework
Hannah Nisonson, Alexander H. Kiser, Benjamin P. Gressler, A.K. Leight, John A. Young
2024, Report
This story map will take you through the process of exploring and testing methods necessary for a higher resolution, seamless fish habitat assessment across both inland and estuarine waters through the lens of our...
Incorporating climate data into emergency planning and exercises: A primer for emergency management practioners and data developers
Christine M. Albano, Maureen I. McCarthy, Stephanie Anne McAfee, Anne Wein, Michael D. Dettinger
2024, Report
Climate change has and will continue to sharpen climate-related risks to communities and natural resources in California and elsewhere, as the probabilities of more extreme weather, floods, and fires continue to increase. This poses a problem of novel situations for emergency management. Progress has been made in terms of formally...
Diminishing productivity and hyperstable harvest in northern Wisconsin walleye fisheries
Joseph T. Mrnak, Holly Susan Embke, Max V. Wilkinson, Steph L. Shaw, M. Jake Vander Zanden, Greg G. Sass
2024, Canadian Journal of Fisheries and Aquatic Sciences (81) 1650-1665
Managing fisheries in a changing socio-ecological environment may require holistic approaches for identifying and adapting to novel ecosystem dynamics. Using 32 years of Ceded Territory of Wisconsin (CTWI) walleye (Sander vitreus) data, we estimated production (P), biomass (B), biomass turnover (P/B), yield (Y), and yield over production (Y/P) and tested...
Disentangling genetic diversity of Myotis septentrionalis: population structure, demographic history, and effective population size
Jenna R. Grimshaw, Deahn M. Donner, Roger W. Perry, W. Mark Ford, Alex Silvis, Carlos J. Garcia, Richard D. Stevens, David A. Ray
2024, Journal of Mammalogy (105) 854-864
Myotis septentrionalis (Northern Long-eared Bat) has recently suffered a >90% decline in population size in North America due to white-nose syndrome (WNS). We assessed genetic diversity, population structure, current effective population size, and demographic history of M. septentrionalis distributed across the United States to determine baseline levels pre-WNS. We analyzed RADseq data from...
Geophysical characterization of mine influenced groundwater and surface water in the Mayflower section of the Animas River, Bonita Peak Mining District, Silverton Colorado
Dale Werkema, Neil Terry, Brett Trottier
2024, Report
This report details findings from geophysical investigations to identify possible groundwater - surface water interactions near the Mayflower Section of the Animas River in Silverton, Colorado. The Mayflower Section is a mine influenced Superfund Site in Colorado. This investigation utilized electromagnetic induction (EM or EMI), magnetic, and fiber optic distributed...
Methods for computing water-quality concentrations and loads at sites operated by the U.S. Geological Survey Kansas Water Science Center
Mandy L. Stone, Casey J. Lee, Teresa J. Rasmussen, Thomas J. Williams, Ariele R. Kramer, Brian J. Klager
2024, Open-File Report 2024-1049
The U.S. Geological Survey (USGS) Kansas Water Science Center (KSWSC) has published time-series computations of water-quality concentrations and loads based on in situ sensor data since 1995. Water-quality constituent concentrations or densities are computed using regression models that relate in situ sensor values to laboratory analyses of periodically collected samples....
Boom and bust: The effects of masting on seed predator range dynamics and trophic cascades
Michael T. Hallworth, Alexej Sirén, William DeLuca, Timothy Duclos, Kent P. McFarland, Jason M. Hill, Christopher C. Rimmer, Toni Lyn Morelli
2024, Diversity and Distributions (30)
AimSpatiotemporal variation in resource availability is a strong driver of animal distributions. In the northern hardwood and boreal forests of the northeastern United States, tree mast events provide resource pulses that drive the population dynamics of small mammals, including the American red squirrel (Tamiasciurus hudsonicus), a primary songbird nest predator....
Identifying transportation data and system needs for a Federal lands transportation data platform
Daniel Manier, Nicholas Grisham, Amit Armstrong, Elijah Henley, Jason Doolittle, Richard D. Inman
2024, Open-File Report 2024-1038
Executive SummaryModern transportation and land-use planning efforts include information from many sources to address topics such as safety, efficiency, commercial, and social needs. This wide breadth of topics provides opportunities for collaboration and development of common tools for diverse users. In many cases, different information systems provide the spatial data...
The new self-anchored suspension (SAS) San Francisco Bay Bridge- Its response to a small earthquake
Mehmet Celebi
2024, Conference Paper, Proceedings of the 18th WCEE 2024
This paper presents a summary of previously published work (Celebi 2023) related to the new Self-Anchored Suspension (SAS) bridge that went into service within the last decade as a replacement for the older truss bridge spanning between Yerba Buena Island and Oakland, California, within the San Francisco Bay Area. During the...