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Publication Extents

Not all publications have extents, not all extents are completely accurate
Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon
Jin-Hyoung Kim, Daniel J Macqueen, James Winton, John D. Hansen, Hyun Park, Robert H Devlin
2019, BMC Genomics (20)
Background Transcriptomic responses to immune stimulation were investigated in coho salmon (Oncorhynchus kisutch) with distinct growth phenotypes. Wild-type fish were contrasted to strains with accelerated growth arising either from selective breeding (i.e. domestication) or genetic modification. Such distinct routes to accelerated growth may have unique implications for relationships and/or trade-offs between...
A seasonal population matrix model of the Caribbean Red-tailed Hawk Buteo jamaicensis jamaicensis in eastern Puerto Rico
Julio C. Gallardo, Francisco Vilella, Michael E. Colvin
2019, Ibis (161) 459-466
Reliable estimates of life history parameters and their functional role in animal population trajectories are critical, yet often missing, components in conservation and management. We developed seasonal matrix population models of the Red-tailed Hawk Buteo jamaicensis jamaicensis in the upper and lower forests of the Luquillo Mountains, Puerto...
Facilitated adaptation for conservation – Can gene editing save Hawaii's endangered birds from climate driven avian malaria?
Michael D. Samuel, Wei Liao, Carter T. Atkinson, Dennis Lapointe
2019, Biological Conservation (241) 108390
Avian malaria has played a significant role in causing extinctions, population declines, and limiting the elevational distribution of Hawaiian honeycreepers. Most threatened and endangered honeycreepers only exist in high-elevation forests where the risk of malaria infection is limited. Because Culex mosquito vectors and avian malaria dynamics are strongly influenced by...
Flow modification in the Nation’s streams and rivers
Daren M. Carlisle, David M. Wolock, Christopher P. Konrad, Gregory J. McCabe, Ken Eng, Theodore E. Grantham, Barbara Mahler
2019, Circular 1461
This report summarizes a national assessment of flowing waters conducted by the U.S. Geological Survey’s (USGS) National Water-Quality Assessment (NAWQA) Project and addresses several pressing questions about the modification of natural flows in streams and rivers. The assessment is based on the integration, modeling, and synthesis of monitoring data collected by...
Primarily resident grizzly bears respond to late-season elk harvest
Frank T. van Manen, Michael R. Ebinger, David D. Gustine, Mark A. Haroldson, Katharine R. Wilmot, Craig Whitman
2019, Ursus (30)
Autumn ungulate hunting in the Greater Yellowstone Ecosystem carries the risk of hunter–grizzly bear (Ursus arctos) conflict and creates a substantial challenge for managers. For Grand Teton National Park, Wyoming, USA, a key information need is whether increased availability of elk (Cervus canadensis) carcasses during a late autumn (Nov–Dec) harvest...
Flood-inundation maps for the North Platte River at Scottsbluff and Gering, Nebraska, 2018
Kellan R. Strauch
2019, Scientific Investigations Report 2019-5099
Digital flood-inundation maps for an 8.8-mile reach of the North Platte River, from 1.5 miles upstream from the Highway 92 bridge to 3 miles downstream from the Highway 71 bridge in Scottsbluff County, were created by the U.S. Geological Survey (USGS) in cooperation with the Cities of Scottsbluff and Gering,...
Bathymetric map and surface area and capacity table for Beaver Lake near Rogers, Arkansas, 2018
Richard J. Huizinga, Jarrett T. Ellis, Jennifer B. Sharpe, Jessica Z. LeRoy, Joseph M. Richards
2019, Scientific Investigations Map 3445
Beaver Lake was constructed in 1966 on the White River in the northwest corner of Arkansas for flood control, hydroelectric power, public water supply, and recreation. The surface area of Beaver Lake is about 27,900 acres and approximately 449 miles of shoreline are at the conservation pool level (1,120 feet...
Temporal variations in scrubbing of magmatic gases at the summit of Kīlauea Volcano, Hawai‘i
Shaul Hurwitz, Kyle R. Anderson
2019, Geophysical Research Letters (46) 14469-14476
Measurements of gas compositions and emission rates play a major role in monitoring restless volcanoes. However, thermodynamic calculations imply that scrubbing by groundwater will prevent most HCl and significant SO2 emissions until dry pathways are established, thus leading to underestimates of gas released from magma and magma volumes. Despite the...
Methods for estimating the magnitude and frequency of peak streamflows for unregulated streams in Oklahoma developed by using streamflow data through 2017
Jason M. Lewis, Shelby L. Hunter, L.G. Labriola
2019, Scientific Investigations Report 2019-5143
The U.S. Geological Survey (USGS), in cooperation with the Oklahoma Department of Transportation, updated peak-streamflow regression equations for estimating flows with annual exceedance probabilities from 50 to 0.2 percent for the State of Oklahoma. These regression equations incorporate basin characteristics to estimate peak-streamflow magnitude and frequency throughout the State by...
A hydrogeomorphic classification of connectivity of large rivers of the Upper Midwest, United States
Robert B. Jacobson, Jason J. Rohweder, Nathan R. De Jager
2019, Scientific Investigations Report 2019-5132
River connectivity is defined as the water-mediated exchange of matter, energy, and biota between different elements of the riverine landscape. Connectivity is an especially important concept in large-river corridors (channel plus floodplain ) because large rivers integrate fluxes of water, sediment, nutrients, contaminants, and other transported constituents emanating from large...
Earth as art 6
U.S. Geological Survey
2019, General Information Product 194
Earth has a stunning variety of landscapes. The colors, patterns, textures, and shapes all make for intriguing artwork as seen from the perspective of space.Earth As Art shows not only what satellites capture in the visible wavelengths of light you and I can see, but also what’s hiding in the...
Scientist’s guide to developing explanatory statistical models using causal analysis principles
James B. Grace, Kathryn Irvine
2019, Ecology (101)
Recent discussions of model selection and multimodel inference highlight a general challenge for researchers, which is how to clearly convey the explanatory content of a hypothesized model or set of competing models. The advice from statisticians for scientists employing multimodel inference is to develop a well‐thought‐out set of candidate models...
Visualizing populations of North American sea ducks: Maps to guide research and management planning
John M. Pearce, Paul L. Flint, Mary E. Whalen, Sarah A. Sonsthagen, Josh Stiller, Vijay P. Patil, Timothy D. Bowman, Sean Boyd, Shannon S. Badzinski, H.G. Gilchrist, Scott G. Gilliland, Christine Lepage, Pam Loring, Daniel McAuley, Nic McLellan, Jason Osenkowski, Eric T. Reed, Anthony J. Roberts, Myra Robertson, Tom Rothe, David E. Safine, Emily D. Silverman, Kyle A. Spragens
2019, Open-File Report 2019-1142
North American sea ducks generally breed in mid- to northern-latitude regions and nearly all rely upon marine habitats for much of their annual cycle. Most sea duck species remained poorly studied until the 1990s when declines were noted in several species and populations. Subsequent research, much of which was funded...
Synthesis of maternal transfer of mercury in birds: Implications for altered toxicity risk
Joshua T. Ackerman, Mark P. Herzog, David C. Evers, Daniel A. Cristol, Kevin P. Kenow, Gary Heinz, Raphael A Lavoie, Rebecka Brasso, Mark L. Mallory, Jennifer F Provencher, Birgit M Braune, Angela Matz, Joel A. Schmutz, Collin A. Eagles-Smith, Lucas J Savoy, Michael W. Meyer, C. Alex Hartman
2019, Environmental Science & Technology (54) 2878-2891
Maternal transfer is the predominant route of methylmercury (MeHg) exposure to offspring. We reviewed and synthesized published and unpublished data on maternal transfer of MeHg in birds. Using paired samples of females’ blood (n=564) and their eggs (n=1814) from 26 bird species in 6 taxonomic orders, we conducted...
Using out-of-sample yield forecast experiments to evaluate which earth observation products best indicate end of season maize yields
Frank Davenport, Laura Harrison, Shraddhanand Shukla, Gregory Husak, Chris Funk, Amy McNally
2019, Environmental Research Letters (14)
In East Africa, accurate grain yield predictions can help save lives and protect livelihoods. Regional grain yield forecasts can inform decisions regarding the availability and prices of key staples, food aid, and large humanitarian responses. Here, we use earth observation (EO) products to develop and evaluate subnational grain yield forecasts...
The influence of layout on Appalachian Trail soil loss, widening, and muddiness: Implications for sustainable trail design and management
Fletcher Meadema, Jeffrey L. Marion, Johanna Arredondo, Jeremy Wimpey
2019, Journal of Environmental Management (257)
This research investigates the influence of layout and design on the severity of trail degradation. Previous trail studies have been restricted by relatively small study areas which provide a limited range of environmental conditions and therefore produce findings with limited applicability; this research improves on this limitation by analyzing...
Functional characterization and osmoregulatory role of the Na+/K+/2Cl--cotransporter (NKCC1) in the gill of sea lamprey (Petromyzon marinus), a basal vertebrate
Ciaran Alvar Seeland Shaughnessy, Stephen D. McCormick
2019, American Journal of Physiology - Regulatory, Integrative and Comparative Physiology (318) R17-R29
The present study provides molecular and functional characterization of Na+/K+/2Cl- cotransporter (nkcc1/NKCC1) in the gills of sea lamprey, the most basal extant vertebrate with an osmoregulatory strategy. We report the full-length peptide sequence for the lamprey NKCC1, which we show to group strongly with and occupy a basal position among...
Aridity drives spatiotemporal patterns of masting across the latitudinal range of a dryland conifer
Andreas Wion, Peter Weisberg, Ian Pearse, Miranda Redmond
2019, Ecography (43) 569-580
Masting, or the synchronous and irregular production of seed crops, is controlled by environmental conditions and resource budgets. Increasing temperatures and shifting precipitation regimes may alter the frequency and magnitude of masting, especially in species that experience chronic resource stress. Yet the effects of a changing...
Factors influencing neonicotinoid insecticide concentrations in floodplain wetland sediments across Missouri
K.J. Kuechle, Elisabeth B. Webb, D. Mengel, A.R. Main
2019, Environmental Science and Technology (53) 10591-10600
Widespread use of neonicotinoid insecticides in North America has led to frequent detection of neonicotinoids in surface waters. Despite frequent surface water detection, few studies have evaluated underlying sediments for the presence of neonicotinoids. Thus, we sampled water and sediments for...
Assessment of uncontained Zequanox applications for zebra mussel control in a Midwestern lake
James A. Luoma, Diane L. Waller, Todd J. Severson, Matthew Barbour, Jeremy K. Wise, Eric G. Lord, Lynn A. Bartsch, Michelle R. Bartsch
2019, Open-File Report 2019-1126
Zebra mussels (Dreissena polymorpha) are invasive bivalves that have perturbed aquatic ecosystems within North America since their introduction in the mid-1980s. Control of zebra mussels has largely been restricted to raw water conveyance systems and associated infrastructures because few control products are registered for application in surface waters. The biopesticide...
Simulation of groundwater flow and chloride transport in the “1,500-foot” sand, “2,400-foot” sand, and “2,800-foot” sand of the Baton Rouge area, Louisiana
Charles E. Heywood, Maxwell A. Lindaman, John K. Lovelace
2019, Scientific Investigations Report 2019-5102
Groundwater withdrawals since the 1940s have lowered water levels, altered groundwater-flow directions, and caused saltwater to intrude within some freshwater-containing sands of the fluvial-deltaic Southern Hills regional aquifer system beneath Baton Rouge, Louisiana. New interpretations of stratigraphic correlations amongst geophysical well logs were utilized to revise a hydrogeologic framework that...
Seamless numerical simulation of a hazard cascade in which a landslide triggers a dam-breach flood and consequent debris flow
David L. George, Richard M. Iverson, Charles M. Cannon
2019, Conference Paper, Seventh International Conference on Debris-Flow Hazards Mitigation - Proceedings
Numerical simulations of hazard cascades downstream from moraine-dammed lakes commonly must specify linkages between models of discrete processes such as wave overtopping, dam breaching, erosion, and downstream floods or debris flows. Such linkages can be rather arbitrary and can detract from the ability to accurately conserve mass and momentum...
Manufacturing simple and inexpensive soil surface temperature and gravimetric water content sensors
Armin J. Howell, Colin Tucker, Edmund E. Grote, Maik Veste, Jayne Belnap, Gerhard Kast, Bettina Weber, Sasha C. Reed
2019, Journal of Visualized Experiments (154)
Quantifying temperature and moisture at the soil surface is essential for understanding how soil surface biota respond to changes in the environment. However, at the soil surface these variables are highly dynamic and standard sensors do not explicitly measure temperature or moisture in the upper few millimeters of the soil...
Plot Locator: An app for locating plots in the field
Jere Boudell, Beth Middleton
2019, Applications in Plant Science (7)
PREMISE: One of the challenges in field biology is locating previously sampled plots. The Plot Locator app was developed to assist field biologists with plot identification and location, with or without GPS or online connectivity. METHODS AND RESULTS: The Plot Locator Android app helps users locate field plots by creating...
Early generation hybrids may drive range expansion of two invasive fishes
Alison A. Coulter, Marybeth K. Brey, James T. Lamer, Gregory W. Whitledge, James E. Garvey
2019, Freshwater Biology (65) 716-730
1. Introgressive hybridization between two invasive species has the potential to contribute to their invasion success and provide genetic resiliency to rapidly adapt to new environments. Additionally, differences in the behaviour of hybrids may lead to deleterious ecosystem effects that compound any negative impacts of the invading parental species....