Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: Infraorder Furnariides)
R.G. Moyle, R.T. Chesser, R.T. Brumfield, J.G. Tello, D.J. Marchese, J. Cracraft
2009, Cladistics (25) 386-405
The infraorder Furnariides is a diverse group of suboscine passerine birds comprising a substantial component of the Neotropical avifauna. The included species encompass a broad array of morphologies and behaviours, making them appealing for evolutionary studies, but the size of the group (ca. 600 species) has limited well-sampled higher-level phylogenetic...
Use of heat to estimate streambed fluxes during extreme hydrologic events
Jeannie R.B. Barlow, Richard H. Coupe
2009, Water Resources Research (45)
Using heat as a tracer, quantitative estimates of streambed fluxes and the critical stage for flow reversal were calculated for high‐flow events that occurred on the Bogue Phalia (a tributary of the Mississippi River) following the 2005 Hurricanes Katrina and Rita. In June 2005, piezometers were installed in the Bogue...
The Eocene-Oligocene sedimentary record in the Chesapeake Bay impact structure: Implications for climate and sea-level changes on the western Atlantic margin
P. Schulte, B.S. Wade, A. Kontny, Jean Self-Trail
2009, Special Paper of the Geological Society of America (458) 839-865
A multidisciplinary investigation of the Eocene-Oligocene transition in the International Continental Scientific Drilling Program (ICDP)-U.S. Geological Survey (USGS) Eyreville core from the Chesapeake Bay impact basin was conducted in order to document environmental changes and sequence stratigraphic setting. Planktonic foraminifera and calcareous nannofossil biostratigraphy indicate that the Eyreville core includes...
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T. Pearson, P. Giffard, S. Beckstrom-Sternberg, R. Auerbach, H. Hornstra, A. Tuanyok, E.P. Price, M.B. Glass, B. Leadem, J. S. Beckstrom-Sternberg, G.J. Allan, J.T. Foster, D.M. Wagner, R.T. Okinaka, S.H. Sim, O. Pearson, Z. Wu, J. Chang, R. Kaul, A.R. Hoffmaster, T.S. Brettin, R.A. Robison, M. Mayo, J.E. Gee, P. Tan, B.J. Currie, P. Keim
2009, BMC Biology (7)
Background: Phylogeographic reconstruction of some bacterial populations is hindered by low diversity coupled with high levels of lateral gene transfer. A comparison of recombination levels and diversity at seven housekeeping genes for eleven bacterial species, most of which are commonly cited as having high levels of lateral gene transfer shows...
Web-based decision support and visualization tools for water quality management in the Chesapeake Bay watershed
C. Mullinix, P. Hearn, H. Zhang, J. Aguinaldo
2009, Conference Paper, 2009 17th International Conference on Geoinformatics, Geoinformatics 2009
Federal, State, and local water quality managers charged with restoring the Chesapeake Bay ecosystem require tools to maximize the impact of their limited resources. To address this need, the U.S. Geological Survey (USGS) and the Environmental Protection Agency's Chesapeake Bay Program (CBP) are developing a suite of Web-based tools called...
Water balance dynamics in the Nile Basin
Gabriel B. Senay, Kwabena Asante, Guleid A. Artan
2009, Hydrological Processes (23) 3675-3681
Understanding the temporal and spatial dynamics of key water balance components of the Nile River will provide important information for the management of its water resources. This study used satellite-derived rainfall and other key weather variables derived from the Global Data Assimilation System to estimate and map the distribution of...
Titan's surface at 2.2-cm wavelength imaged by the Cassini RADAR radiometer: Calibration and first results
M.A. Janssen, R. D. Lorenz, R. West, F. Paganelli, R.M. Lopes, R. L. Kirk, C. Elachi, S. D. Wall, W.T.K. Johnson, Y. Anderson, R.A. Boehmer, P. Callahan, Y. Gim, G.A. Hamilton, K.D. Kelleher, L. Roth, B. Stiles, Gall A. Le
2009, Icarus (200) 222-239
The first comprehensive calibration and mapping of the thermal microwave emission from Titan's surface is reported based on radiometric data obtained at 2.2-cm wavelength by the passive radiometer included in the Cassini Radar instrument. The data reported were accumulated from 69 separate observational segments in Titan passes from Ta (October...
Short- and long-term response of deteriorating brackish marshes and open-water ponds to sediment enhancement by thin-layer dredge disposal
M.K. La Peyre, B. Gossman, Bryan P. Piazza
2009, Estuaries and Coasts (32) 390-402
Artificial sediment enhancement using a thin layer of dredged material has been suggested as a means to increase elevation and create soil conditions conducive to increased marsh structure and function in deteriorating marshes. Using a chronosequence approach, we examined the effects of sediment enhancement in deteriorating marsh and open-water pond...
Continental-scale patterns in soil geochemistry and mineralogy: results from two transects across the United States and Canada
L. G. Woodruff, W.F. Cannon, D. D. Eberl, D. B. Smith, J.E. Kilburn, J.D. Horton, R. G. Garrett, R.A. Klassen
2009, Applied Geochemistry (24) 1369-1381
In 2004, the US Geological Survey (USGS) and the Geological Survey of Canada (GSC) initiated a pilot study that involved collection of more than 1500 soil samples from 221 sites along two continental transects across Canada and the United States. The pilot study was designed to test and refine protocols...
Characterizing canopy biochemistry from imaging spectroscopy and its application to ecosystem studies
R.F. Kokaly, Gregory P. Asner, S.V. Ollinger, M.E. Martin, C.A. Wessman
2009, Remote Sensing of Environment (113)
For two decades, remotely sensed data from imaging spectrometers have been used to estimate non-pigment biochemical constituents of vegetation, including water, nitrogen, cellulose, and lignin. This interest has been motivated by the important role that these substances play in physiological processes such as photosynthesis, their relationships with ecosystem processes such...
A method for assigning species into groups based on generalized Mahalanobis distance between habitat model coefficients
C.J. Williams, P.J. Heglund
2009, Environmental and Ecological Statistics (16) 495-513
Habitat association models are commonly developed for individual animal species using generalized linear modeling methods such as logistic regression. We considered the issue of grouping species based on their habitat use so that management decisions can be based on sets of species rather than individual species. This research was motivated...
Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound
J.B.J. Harvey, M.S. Hoy, R. J. Rodriguez
2009, Journal of Experimental Marine Biology and Ecology (369) 93-99
Non-native marine species have been and continue to be introduced into Puget Sound via several vectors including ship's ballast water. Some non-native species become invasive and negatively impact native species or near shore habitats. We present a new methodology for the development and testing of taxon specific PCR primers designed...
Response of the everglades ridge and slough landscape to climate variability and 20th-century water management
C.E. Bernhardt, Debra A. Willard
2009, Ecological Applications (19) 1723-1738
The ridge and slough landscape of the Florida Everglades consists of a mosaic of linear sawgrass ridges separated by deeper-water sloughs with tree islands interspersed throughout the landscape. We used pollen assemblages from transects of sediment cores spanning sawgrass ridges, sloughs, and ridge-slough transition zones to determine the timing of...
San Andreas fault geometry at Desert Hot Springs, California, and its effects on earthquake hazards and groundwater
R. D. Catchings, M. J. Rymer, M. R. Goldman, G. Gandhok
2009, Bulletin of the Seismological Society of America (99) 2190-2207
The Mission Creek and Banning faults are two of the principal strands of the San Andreas fault zone in the northern Coachella Valley of southern California. Structural characteristics of the faults affect both regional earthquake hazards and local groundwater resources. We use seismic, gravity, and geological data to characterize the...
Isotopic variability of mercury in ore, mine-waste calcine, and leachates of mine-waste calcine from areas mined for mercury
S.J. Stetson, J. E. Gray, R. B. Wanty, D.L. Macalady
2009, Environmental Science & Technology (43) 7331-7336
The isotopic composition of mercury (Hg) was determined in cinnabar ore, mine-waste calcine (retorted ore), and leachates obtained from water leaching experiments of calcine from two large Hg mining districts in the U.S. This study is the first to report significant mass-dependent Hg isotopic fractionation between cinnabar ore and resultant...
Evidence for an Alleghanian (Early Carboniferous to Late Permian) tectonothermal event in the New Jersey Coastal Plain basement from 40Ar/39Ar biotite data, geochemistry and gravity modeling
T.J. Maguire, R.A. Volkert, C. C. Swisher III, R. E. Sheridan
2009, Journal of Geodynamics (48) 23-36
40Ar/39Ar dating of biotite from felsic orthogneiss recovered from the -3890-foot level of the Island Beach State Park (IBSP) well beneath the outer New Jersey Coastal Plain was accomplished using CO2 laser incremental-heating techniques. Over 75% of the Ar released from the incremental-heating experiment form a well-behaved plateau with a...
Using shakecast and shakemap for lifeline post-earthquake response and earthquake scenario planning
K.-W. Lin, D.J. Wald, L.L. Turner
2009, Conference Paper, TCLEE 2009: Lifeline Earthquake Engineering in a Multihazard Environment
The U. S. Geological Survey (USGS) ShakeCast system is a freely-available, post-earthquake situational awareness application that automatically retrieves earthquake shaking data from ShakeMap, compares intensity measures against users' facilities, sends notifications of potential damage to responsible parties, and generates facility damage assessment maps and other Web-based products for emergency managers...
Persistence rates and detection probabilities of bird carcasses on beaches of Unalaska Island, Alaska following the wreck of the M/V Selendang Ayu
G. Vernon Byrd, Joel H. Reynolds, Paul L. Flint
2009, Marine Ornithology: Journal of Seabird Research and Conservation (37) 197-204
Mark–recapture techniques were used to estimate persistence rates and detection probabilities of bird carcasses associated with the oil spill following the wreck of the M/V Selendang Ayu at Unalaska Island, Alaska. Only 14.6% of carcasses placed on beaches remained after 24 hours, and all carcasses that remained had been scavenged...
Application of models to conservation planning for terrestrial birds in North America
Jane A. Fitzgerald, Wayne E. Thogmartin, Randy Dettmers, Tim Jones, Christopher Rustay, Janet M. Ruth, Frank R. Thompson III, Tom Will
Joshua J. Millspaugh, Frank R. Thompson III, editor(s)
2009, Book chapter, Models for planning wildlife conservation in large landscapes
Partners in Flight (PIF), a public–private coalition for the conservation of land birds, has developed one of four international bird conservation plans recognized under the auspices of the North American Bird Conservation Initiative (NABCI). Partners in Flight prioritized species most in need of conservation attention...
An introduction to standardized sampling
Scott A. Bonar, Salvador Contreras-Balderas, Alison C. Iles
Scott A. Bonar, Wayne A. Hubert, David W. Willis, editor(s)
2009, Book chapter, Standard methods for sampling North American freshwater fishes
It was probably one of the oddest riots in the history of the United States. In Erie, Pennsylvania during 1853. federal marshals were called to restore order during bloody uprisings. A mob of women, equipped with sledgehammers, was tearing up railroad rack to protest standardization of track width (Nesmith 1985)....
Offshore double-planed shallow seismic zone in the NE Japan forearc region revealed by sP depth phases recorded by regional networks
S.S.N. Gamage, N. Umino, A. Hasegawa, S. H. Kirby
2009, Geophysical Journal International (178) 195-214
We detected the sP depth phase at small epicentral distances of about 150 km or more in the seismograms of shallow earthquakes in the NE Japan forearc region. The focal depths of 1078 M > 3 earthquakes that occurred from 2000 to 2006 were precisely determined using the time delay...
Coldwater fish in wadeable streams
Jason B. Dunham, Amanda E. Rosenberger, Russell F. Thurow, C. Andrew Dolloff, Philip J. Howell
Scott A. Bonar, Wayne A. Hubert, David W. Willis, editor(s)
2009, Book chapter, Standard methods for sampling North American freshwater fishes
Standardizing sampling methods for fish populations across large regions is important for consistent measurement of large-scale effects of climate or geography. In addition, pooling samples creates larger sample sizes and can facilitate data sharing among scientists and land managers. Sampling freshwater fish has largely not been standardized due to the...
Re-greening the Sahel: Farmer-led innovation in Burkina Faso and Niger
Chris Reij, Melinda Smale, G. Gray Tappan
David J. Spielman, Rajul Pandya-Lorch, editor(s)
2009, Book chapter, Millions fed: Proven successes in agricultural development
The Sahel—the belt of land that stretches across Africa on the southern edge of the Sahara—has always been a tough place to farm. Rainfall is low and droughts are frequent. The crust of hard soil is, at times, almost impermeable, and harsh winds threaten to sweep away everything in their...
Estuarine Ecology of Juvenile Salmon in Western Alaska: a Review
Christian E. Zimmerman, Nicola Hillgruber
2009, Book chapter, American Fisheries Society Symposium
In the late 1990s and early 2000s, large declines in numbers of chum salmon Oncorhynchus keta and Chinook salmon O. tshawytscha returning to the Arctic-YukonKuskokwim (AYK) region (Alaska, USA) illuminated the need for an improved understanding of the variables controlling salmon abundance at all life stages. In addressing questions about...
Identification guide to skates (Family Rajidae) of the Canadian Atlantic and adjacent regions
Kenneth J. Sulak, P. D. MacWhirter, K.E. Luke, A.D. Norem, J.M. Miller, J.A. Cooper, L.E. Harris
2009, Report
Ecosystem-based management requires sound information on the distribution and abundance of species both common and rare. Therefore, the accurate identification for all marine species has assumed a much greater importance. The identification of many skate species is difficult as several are easily confused and has been found to be problematic...