Metabarcoding of environmental DNA samples to explore the use of uranium mine containment ponds as a water source for wildlife
Katy E. Klymus, Catherine A. Richter, Nathan Thompson, Jo Ellen Hinck
2017, Diversity (9)
Understanding how anthropogenic impacts on the landscape affect wildlife requires a knowledge of community assemblages. Species surveys are the first step in assessing community structure, and recent molecular applications such as metabarcoding and environmental DNA analyses have been proposed as an additional and complementary wildlife survey method. Here, we test...
Developing a translational ecology workforce
Mark W. Schwartz, J. Kevin Hiers, Frank W. Davis, Gregg Garfin, Stephen T. Jackson, Adam J. Terando, Connie A. Woodhouse, Toni Lyn Morelli, Matthew A. Williamson, Mark W. Brunson
2017, Frontiers in Ecology and the Environment (15) 587-596
We define a translational ecologist as a professional ecologist with diverse disciplinary expertise and skill sets, as well as a suitable personal disposition, who engages across social, professional, and disciplinary boundaries to partner with decision makers to achieve practical environmental solutions. Becoming a translational ecologist requires specific attention to obtaining...
The effect of beaver ponds on water quality in rural coastal plain streams
Christopher W. Bason, Daniel Kroes, Mark M. Brinson
2017, Southeastern Naturalist (16) 584-602
We compared water-quality effects of 13 beaver ponds on adjacent free-flowing control reaches in the Coastal Plain of rural North Carolina. We measured concentrations of nitrate, ammonium, soluble reactive phosphorus (SRP), and suspended sediment (SS) upstream and downstream of paired ponds and control reaches. Nitrate and SS concentrations decreased, ammonium...
Interactive effects of water temperature and salinity on growth and mortality of eastern oysters, Crassostrea virginica: A meta-analysis using 40 years of monitoring data
Michael R. Lowe, Troy Sehlinger, Thomas M. Soniat, Megan K. LaPeyre
2017, Journal of Shellfish Research (36) 683-697
Despite nearly a century of exploitation and scientific study, predicting growth and mortality rates of the eastern oyster (Crassostrea virginica) as a means to inform local harvest and management activities remains difficult. Ensuring that models reflect local population responses to varying salinity and temperature combinations requires locally appropriate models. Using...
Sampling bees in tropical forests and agroecosystems: A review
Sara G. Prado, Hien T. Ngo, Jaime A. Florez, Jaime A. Collazo
2017, Journal of Insect Conservation (21) 753-770
Bees are the predominant pollinating taxa, providing a critical ecosystem service upon which many angiosperms rely for successful reproduction. Available data suggests that bee populations worldwide are declining, but scarce data in tropical regions precludes assessing their status and distribution, impact on ecological services, and response to management actions. Herein,...
An intertebrate ecosystem engineer likely covered under the umbrella of sage-grouse conservation
Jason D. Carlisle, David R. Stewart, Anna D. Chalfoun
2017, Western North American Naturalist (77) 450-463
Conservation practitioners often rely on areas designed to protect species of greatest conservation priority to also conserve co-occurring species (i.e., the umbrella species concept). The extent to which vertebrate species may serve as suitable umbrellas for invertebrate species, however, has rarely been explored. Sage-grouse (Centrocercus spp.) have high conservation priority throughout...
Macroscale patterns of synchrony identify complex relationships among spatial and temporal ecosystem drivers
Noah R. Lottig, Pang-Ning Tan, Tyler Wagner, Kendra Spence Cheruvelil, Patricia A. Soranno, Emily H. Stanley, Caren E. Scott, Craig A. Stow, Shuai Yuan
2017, Ecosphere (8) 1-11
Ecology has a rich history of studying ecosystem dynamics across time and space that has been motivated by both practical management needs and the need to develop basic ideas about pattern and process in nature. In situations in which both spatial and temporal observations are available, similarities in temporal behavior...
Comparison of two viewing methods for estimating largemouth bass and walleye ages from sectioned otoliths and dorsal spines
Eric J. Wegleitner, Daniel A. Isermann
2017, North American Journal of Fisheries Management (37) 1304-1310
Many biologists use digital images for estimating ages of fish, but the use of images could lead to differences in age estimates and precision because image capture can produce changes in light and clarity compared to directly viewing structures through a microscope. We used sectioned sagittal otoliths from 132 Largemouth...
Characters in Arctostaphylos taxonomy
Jon E. Keeley, V. Thomas Parker, Michael C. Vasey
2017, Madroño (64) 138-153
There is value in understanding the past and how it has affected the present. Science focuses on empirical findings, and we know that our prior experiences and those of our predecessors play important roles in determining how we interpret the present. We learn from accomplishments and foibles of predecessors and...
Evaluating factors driving population densities of mayfly nymphs in Western Lake Erie
Martin A. Stapanian, Patrick Kocovsky, Betsy L. Bodamer Scarbro
2017, Journal of Great Lakes Research (43) 1111-1118
Mayfly (Hexagenia spp.) nymphs have been widely used as indicators of water and substrate quality in lakes. Thermal stratification and the subsequent formation of benthic hypoxia may result in nymph mortality. Our goal was to identify potential associations between recent increases in temperature and eutrophication, which exacerbate hypoxic events in lakes,...
Genomics of Arctic cod
Robert E. Wilson, George K. Sage, Sarah A. Sonsthagen, Megan C. Gravley, Damian M. Menning, Sandra L. Talbot
2017, OCS Study BOEM 2017-066
The Arctic cod (Boreogadus saida) is an abundant marine fish that plays a vital role in the marine food web. To better understand the population genetic structure and the role of natural selection acting on the maternally-inherited mitochondrial genome (mitogenome), a molecule often associated with adaptations to temperature, we analyzed...
Thermal tolerances of fishes occupying groundwater and surface-water dominated streams
Nicole Farless, Shannon K. Brewer
2017, Freshwater Science (36) 866-876
A thermal tolerance study mimicking different stream environments could improve our ecological understanding of how increasing water temperatures affect stream ectotherms and improve our ability to predict organism responses based on river classification schemes. Our objective was to compare the thermal tolerances of stream fishes of different habitat guilds among...
Diurnal feeding behavior of the American Eel Anguilla rostrata
Augustin C. Engman, Jesse R. Fischer, Thomas J. Kwak, Michael J. Walter
2017, Food Webs (13) 27-29
Despite potential to structure ecosystem food webs through top-down effects, the trophic interactions of the American Eel Anguilla rostrata remain largely understudied. All previous research on the trophic ecology of American Eel in inland aquatic ecosystems has been conducted in temperate continental regions of the species' range. These studies have led to...
How many Laysan Teal Anas laysanensis are on Midway Atoll? Methods for monitoring abundance after reintroduction
Michelle H. Reynolds, Karen Courtot, Jeffrey Hatfield
2017, Wildfowl (67) 60-71
Wildlife managers often request a simple approach to monitor the status of species of concern. In response to that need, we used eight years of monitoring data to estimate population size and test the validity of an index for monitoring accurately the abundance of reintroduced, endangered Laysan Teal Anas laysanensis....
USGS assessment of water and proppant requirements and water production associated with undiscovered petroleum in the Bakken and Three Forks Formations
Seth S. Haines, Brian A. Varela, Sarah J. Hawkins, Nicholas J. Gianoutsos, Marilyn E. Tennyson
2017, Conference Paper, SPE/AAPG/SEG Unconventional Resources Technology Conference
The U.S. Geological Survey (USGS) has conducted an assessment of water and proppant requirements, and water production volumes, associated with possible future production of undiscovered petroleum resources in the Bakken and Three Forks Formations, Williston Basin, USA. This water and proppant assessment builds directly from the 2013 USGS petroleum assessment...
Determining quantity and quality of retained oil in mature marly chalk and marlstone of the Cretaceous Niobrara Formation by low-temperature hydrous pyrolysis
Michael Lewan, Mark D. Sonnenfeld
2017, Conference Paper, Unconventional Resources Technology Conference
Low-temperature hydrous pyrolysis (LTHP) at 300°C (572°F) for 24 h released retained oils from 12- to 20-meshsize samples of mature Niobrara marly chalk and marlstone cores. The released oil accumulated on the water surface of the reactor, and is compositionally similar to oil produced from the same well. The quantities...
Heterogeneous responses of temperate-zone amphibian populations to climate change complicates conservation planning
Erin L. Muths, Thierry A. Chambert, B. R. Schmidt, D. A. W. Miller, Blake R. Hossack, P. Joly, O. Grolet, D. M. Green, David S. Pilliod, M. Cheylan, Robert N. Fisher, R. M. McCaffery, M. J. Adams, W. J. Palen, J. W. Arntzen, J. Garwood, Gary M. Fellers, J. M. Thirion, A. Besnard, Evan H. Campbell Grant
2017, Scientific Reports (7) 1-10
The pervasive and unabated nature of global amphibian declines suggests common demographic responses to a given driver, and quantification of major drivers and responses could inform broad-scale conservation actions. We explored the influence of climate on demographic parameters (i.e., changes in the probabilities of survival and recruitment) using 31 datasets...
Comment on linking the sex difference in PCB concentrations of fish to release of eggs at spawning: Time to jettison the dogma
Charles P. Madenjian
2017, Oceanography & Fisheries (5)
For the past 20 years or so, a commonly used explanation in the scientific literature for higher polychlorinated biphenyl (PCB) concentrations in male fish than in female fish has been that females lose a high proportion of their PCB body burden by releasing eggs at spawning time, and therefore the...
Detrital zircon geochronology of quartzose metasedimentary rocks from parautochthonous North America, east-central Alaska
Cynthia Dusel-Bacon, Christopher S. Holm-Denoma, James V. Jones III, John N. Aleinikoff, James K. Mortensen
2017, Lithosphere (9) 927-952
We report eight new U-Pb detrital zircon ages for quartzose metasedimentary rocks from four lithotectonic units of parautochthonous North America in east-central Alaska: the Healy schist, Keevy Peak Formation, and Sheep Creek Member of the Totatlanika Schist in the northern Alaska Range, and the Butte assemblage in the northwestern Yukon-Tanana...
Forecasting consequences of changing sea ice availability for Pacific walruses
Mark S. Udevitz, Chadwick V. Jay, Rebecca L. Taylor, Anthony S. Fischbach, William S. Beatty, Shawn R. Noren
2017, Ecosphere (8)
The accelerating rate of anthropogenic alteration and disturbance of environments has increased the need for forecasting effects of environmental change on fish and wildlife populations. Models linking projections of environmental change with behavioral responses and bioenergetic effects can provide a basis for these forecasts. There is particular interest in forecasting...
Documenting mudstone heterogeneity by use of principal component analysis of X-ray diffraction and portable X-ray fluorescence data: A case study in the Triassic Shublik Formation, Alaska North Slope
Adam Boehlke, Katherine J. Whidden, William Benzel
2017, Conference Paper, SEPM-AAPG Research Conference
Determining the chemical and mineralogical variability within fine-grained mudrocks poses analytical challenges but is potentially useful for documenting subtle stratigraphic differences in physicochemical environments that may influence petroleum reservoir properties and behavior. In this study, we investigate the utility of combining principal component analysis (PCA) of X-ray diffraction (XRD) data...
Methane- and dissolved organic carbon-fueled microbial loop supports a tropical subterranean estuary ecosystem
D. Brankovits, John W. Pohlman, H. Niemann, M.B. Leigh, M.C. Leewis, K. W. Becker, T.M. Iliffe, Alvarez. F., M.F. Lehmann, B. Phillips
2017, Nature Communications (8) 1-12
Subterranean estuaries extend inland into density-stratified coastal carbonate aquifers containing a surprising diversity of endemic animals (mostly crustaceans) within a highly oligotrophic habitat. How complex ecosystems (termed anchialine) thrive in this globally distributed, cryptic environment is poorly understood. Here, we demonstrate that a microbial loop shuttles methane and dissolved organic carbon...
Effects of thermal variability on broadband seismometers: Controlled experiments, observations, and implications
Claire Doody, Adam T. Ringler, Robert E. Anthony, David C. Wilson, Austin Holland, Charles R. Hutt, Leo Sandoval
2017, Bulletin of the Seismological Society of America (108) 493-502
Isolating seismic instruments from temperature fluctuations is routine practice within the seismological community. However, the necessary degree of thermal stability required in broadband installations to avoid generating noise or compromising the fidelity in the seismic records is largely unknown and likely application dependent. To quantify the temperature sensitivity of seismometers...
Miocene−Pleistocene deformation of the Saddle Mountains: Implications for seismic hazard in central Washington, USA
Lydia M. Staisch, Harvey Kelsey, Brian Sherrod, Andreas Moller, James B. Paces, Richard J. Blakely, Richard Styron
2017, GSA Bulletin (130) 411-437
The Yakima fold province, located in the backarc of the Cascadia subduction zone, is a region of active strain accumulation and deformation distributed across a series of fault-cored folds. The geodetic network in central Washington has been used to interpret large-scale N-S shortening and westward-increasing strain; however, geodetic data are...
Spatial data analytics on heterogeneous multi- and many-core parallel architectures using python
Jason R. Laura, Sergio J. Rey
2017, Book chapter, Encyclopedia of GIS
Parallel vector spatial analysis concerns the application of parallel computational methods to facilitate vector-based spatial analysis. The history of parallel computation in spatial analysis is reviewed, and this work is placed into the broader context of high-performance computing (HPC) and parallelization research. The rise of cyber infrastructure and its manifestation...