Relationships between indicators of acid-base chemistry and fish assemblages in streams of the Great Smoky Mountains National Park
Barry P. Baldigo, Matt A. Kulp, John S. Schwartz
2018, Ecological Indicators (88) 465-484
The acidity of many streams in the Great Smoky Mountains National Park (GRSM) has increased significantly since pre-industrial (∼1850) times due to the effects of highly acidic atmospheric deposition in poorly buffered watersheds. Extensive stream-monitoring programs since 1993 have shown that fish and macroinvertebrate assemblages have been adversely affected in...
Removing rural roads from the National Land Cover Database to create improved urban maps for the United States, 1992-2011
Christopher E. Soulard, William Acevedo, Stephen V. Stehman
2018, Photogrammetric Engineering and Remote Sensing (84) 101-109
Quantifying change in urban land provides important information to create empirical models examining the effects of human land use. Maps of developed land from the National Land Cover Database (NLCD) of the conterminous United States include rural roads in the developed land class and therefore overestimate the amount of urban...
The impact of lidar elevation uncertainty on mapping intertidal habitats on barrier islands
Nicholas M. Enwright, Lei Wang, Sinéad M. Borchert, Richard H. Day, Laura C. Feher, Michael J. Osland
2018, Remote Sensing (10) 1-18
While airborne lidar data have revolutionized the spatial resolution that elevations can be realized, data limitations are often magnified in coastal settings. Researchers have found that airborne lidar can have a vertical error as high as 60 cm in densely vegetated intertidal areas. The uncertainty of digital elevation models is...
Time series sightability modeling of animal populations
Althea A. ArchMiller, Robert Dorazio, Katherine St. Clair, John R. Fieberg
2018, PLoS ONE (13) 1-16
Logistic regression models—or “sightability models”—fit to detection/non-detection data from marked individuals are often used to adjust for visibility bias in later detection-only surveys, with population abundance estimated using a modified Horvitz-Thompson (mHT) estimator. More recently, a model-based alternative for analyzing combined detection/non-detection and detection-only data was developed. This approach seemed...
Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape
Scott Hotaling, Clint C. Muhlfeld, J. Joseph Giersch, Omar Ali, Steve Jordan, Michael R. Miller, Gordon Luikart, David W. Weisrock
2018, Journal of Biogeography (45) 304-317
AimClimate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and...
Hypocenter relocation along the Sunda arc in Indonesia, using a 3D seismic velocity model
Andri Dian Nugraha, Hasbi A. Shiddiqi, Sri Widiyantoro, Clifford H. Thurber, Jeremy D. Pesicek, Haijiang Zhang, Samsul H. Wiyono, Mohamad Ramadhan, Wandano, Mahsyur Irsyam
2018, Seismological Research Letters (89) 603-612
The tectonics of the Sunda arc region is characterized by the junction of the Eurasian and Indo‐Australian tectonic plates, causing complex dynamics to take place. High‐seismicity rates in the Indonesian region occur due to the interaction between these tectonic plates. The availability of a denser network of seismometers after the...
Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States
Soo-Rang Lee, Yeong-Seok Jo, Chan-Ho Park, Jonathan M. Friedman, Matthew S. Olson
2018, Molecular Ecology (27) 636-646
Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the spatial...
Shrubland carbon sink depends upon winter water availability in the warm deserts of North America
Joel A. Biederman, Russell L. Scott, John A. Arnone, Richard L. Jasoni, Marcy E. Litvak, Michael T. Moreo, Shirley A. Papuga, Guillermo E. Ponce-Campos, Adam P. Schreiner-McGraw, Enrique R. Vivoni
2018, Agricultural and Forest Meteorology (249) 407-419
Global-scale studies suggest that dryland ecosystems dominate an increasing trend in the magnitude and interannual variability of the land CO2 sink. However, such model-based analyses are poorly constrained by measured CO2 exchange in open shrublands, which is the most common global land cover type, covering ∼14% of Earth’s surface. Here we evaluate...
Macroecological patterns of sexual size dimorphism in turtles of the world
Mickey Agha, Joshua R. Ennen, A. Justin Nowakowski, Jeffrey E. Lovich, Sarah C. Sweat, Brian D. Todd
2018, Journal of Evolutionary Biology (31) 336-345
Sexual size dimorphism (SSD) is a well-documented phenomenon in both plants and animals; however, the ecological and evolutionary mechanisms that drive and maintain SSD patterns across geographic space at regional and global scales are understudied, especially for reptiles. Our goal was to examine geographic variation of turtle SSD and to...
Why large cells dominate estuarine phytoplankton
James E. Cloern
2018, Limnology and Oceanography (63) S392-S409
Surveys across the world oceans have shown that phytoplankton biomass and production are dominated by small cells (picoplankton) where nutrient concentrations are low, but large cells (microplankton) dominate when nutrient-rich deep water is mixed to the surface. I analyzed phytoplankton size structure in samples collected over 25 yr in San...
Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington
Maureen K. Purcell, Rachel L. Thompson, Joy Evered, John Kerwin, Ted R. Meyers, Bruce Stewart, James Winton
2018, Journal of Fish Diseases (41) 347-355
This research was initiated in conjunction with a systematic, multiagency surveillance effort in the United States (U.S.) in response to reported findings of infectious salmon anaemia virus (ISAV) RNA in British Columbia, Canada. In the systematic surveillance study reported in a companion paper, tissues from various salmonids taken from Washington...
Year-round presence of neonicotinoid insecticides in tributaries to the Great Lakes, USA
Michelle L. Hladik, Steven R. Corsi, Dana W. Kolpin, Austin K. Baldwin, Brett R. Blackwell, Jenna E. Cavallin
2018, Environmental Pollution (235) 1022-1029
To better characterize the transport of neonicotinoid insecticides to the world's largest freshwater ecosystem, monthly samples (October 2015–September 2016) were collected from 10 major tributaries to the Great Lakes, USA. For the monthly tributary samples, neonicotinoids were detected in every month sampled and five of the six target neonicotinoids were...
Volcanic ash activates the NLRP3 inflammasome in murine and human macrophages
David Damby, Claire J. Horwell, Peter J. Baxter, Ulrich Kueppers, Max Schnurr, Donald B. Dingwell, Peter Duewell
2018, Frontiers in Immunology (8)
Volcanic ash is a heterogeneous mineral dust that is typically composed of a mixture of amorphous (glass) and crystalline (mineral) fragments. It commonly contains an abundance of the crystalline silica (SiO2) polymorph cristobalite. Inhalation of crystalline silica can induce inflammation by stimulating the NLRP3 inflammasome, a cytosolic receptor complex that...
Wild-harvested venison yields and sharing by Michigan deer hunters
Amber D. Goguen, Shawn J. Riley, John F. Organ, Brent A. Rudolph
2018, Human Dimensions of Wildlife (23) 197-212
An increased societal focus on wildlife as food and recent policy deliberations regarding legal markets for wild-harvested meat are encouraging wildlife managers and researchers to examine the amount, use, and distribution of meat yielded through recreational hunting. We used responses to questions on the Michigan Deer Harvest Study to estimate...
Quaternary sea-level history and the origin of the northernmost coastal aeolianites in the Americas: Channel Islands National Park, California, USA
Daniel R. Muhs, Jeffrey S. Pigati, R. Randall Schumann, Gary L. Skipp, Naomi Porat, Stephen B. DeVogel
2018, Palaeogeography, Palaeoclimatology, Palaeoecology (491) 38-76
Along most of the Pacific Coast of North America, sand dunes are dominantly silicate-rich. On the California Channel Islands, however, dunes are carbonate-rich, due to high productivity offshore and a lack of dilution by silicate minerals. Older sands on the Channel Islands contain enough carbonate to be cemented into aeolianite....
Making ecological models adequate
Wayne M. Getz, Charles R. Marshall, Colin J. Carlson, Luca Giuggioli, Sadie J. Ryan, Stephanie S. Romanach, Carl Boettiger, Samuel D. Chamberlain, Laurel Larsen, Paolo D'Odorico, David O’Sullivan
2018, Ecology Letters (21) 153-166
Critical evaluation of the adequacy of ecological models is urgently needed to enhance their utility in developing theory and enabling environmental managers and policymakers to make informed decisions. Poorly supported management can have detrimental, costly or irreversible impacts on the environment and society. Here, we examine common issues in ecological...
Uptake and distribution of organo-iodine in deep-sea corals
Nancy G. Prouty, E. Brendan Roark, Leslye M. Mohon, Ching-Chih Chang
2018, Journal of Environmental Radioactivity (187) 122-132
Understanding iodine concentration, transport, and bioavailability is essential in evaluating iodine's impact to the environment and its effectiveness as an environmental biogeotracer. While iodine and its radionuclides have proven to be important tracers in geologic and biologic studies, little is known about transport of this element to the deep sea...
Accurate ocean bottom seismometer positioning method inspired by multilateration technique
Omar Benazzouz, Luis M. Pinheiro, Luis M. A. Matias, Alexandra Afilhado, Daniel Herold, Seth S. Haines
2018, Mathematical Geosciences (50) 569-584
The positioning of ocean bottom seismometers (OBS) is a key step in the processing flow of OBS data, especially in the case of self popup types of OBS instruments. The use of first arrivals from airgun shots, rather than relying on the acoustic transponders mounted in the OBS, is becoming...
Unraveling the dynamics of magmatic CO2 degassing at Mammoth Mountain, California
Loic Pfeiffer, Christoph Wanner, Jennifer L. Lewicki
2018, Earth and Planetary Science Letters (484) 318-328
The accumulation of magmatic CO2 beneath low-permeability barriers may lead to the formation of CO2-rich gas reservoirs within volcanic systems. Such accumulation is often evidenced by high surface CO2 emissions that fluctuate over time. The temporal variability in surface degassing is believed in part to reflect a complex interplay between deep magmatic...
Mapping elemental contamination on Palmyra Atoll National Wildlife Refuge
Matthew A. Struckhoff, Carl E. Orazio, Donald E. Tillitt, David K. Shaver, Diana M. Papoulias
2018, Marine Pollution Bulletin (128) 97-105
Palmyra Atoll, once a WWII U.S. Navy air station, is now a U.S. National Wildlife Refuge with nearly 50 km2 of coral reef and 275 ha of emergent lands with forests of Pisonia grandistrees and colonies of several bird species. Due to the known elemental and organic contamination from chemicals associated with aviation, power...
Assessment of water resources and the potential effects from oil and gas development in the Bureau of Land Management Tri-County planning area, Sierra, Doña Ana, and Otero Counties, New Mexico
Johanna M. Blake, Keely Miltenberger, Anne M. Stewart, Andre Ritchie, Jennifer Montoya, Corey Durr, Amy R. McHugh, Emmanuel G. Charles
2018, Scientific Investigations Report 2017-5151
The U.S. Geological Survey (USGS), in cooperation with the Bureau of Land Management, conducted a study to assess the water resources and potential effects on the water resources from oil and gas development in the Tri-County planning area, Sierra, Doña Ana, and Otero Counties, New Mexico. Publicly available data were...
The relative importance of intrinsic and extrinsic drivers to population growth vary among local populations of Greater Sage-Grouse: An integrated population modeling approach
Peter S. Coates, Brian G. Prochazka, Mark A. Ricca, Brian J. Halstead, Michael L. Casazza, Erik J. Blomberg, Brianne E. Brussee, Lief Wiechman, Joel Tebbenkamp, Scott C. Gardner, Kerry P. Reese
2018, The Auk (135) 240-261
Consideration of ecological scale is fundamental to understanding and managing avian population growth and decline. Empirically driven models for population dynamics and demographic processes across multiple spatial scales can be powerful tools to help guide conservation actions. Integrated population models (IPMs) provide a framework for better parameter estimation by unifying...
A systematic surveillance programme for infectious salmon anaemia virus supports its absence in the Pacific Northwest of the United States
Lori L. Gustafson, Lynn H. Creekmore, Kevin R. Snekvik, Jayde A. Ferguson, Janet V. Warg, Marilyn Blair, Theodore R. Meyers, Bruce Stewart, Kenneth I. Warheit, John Kerwin, Andrew E. Goodwin, Linda D. Rhodes, Janet E. Whaley, Maureen K. Purcell, Collette Bentz, Desiree Shasa, Joel Bader, James R. Winton
2018, Journal of Fish Diseases (41) 337-346
In response to reported findings of infectious salmon anaemia virus (ISAV) in British Columbia (BC), Canada, in 2011, U.S. national, state and tribal fisheries managers and fish health specialists developed and implemented a collaborative ISAV surveillance plan for the Pacific Northwest region of the United States. Accordingly, over a 3-1/2-year...
Permafrost stores a globally significant amount of mercury
Paul F. Schuster, Kevin Schaefer, George R. Aiken, Ronald C. Antweiler, John F. DeWild, Joshua D. Gryziec, Alessio Gusmeroli, Gustaf Hugelius, Elchin E. Jafarov, David P. Krabbenhoft, Lin Liu, Nicole M. Herman-Mercer, Cuicui Mu, David A. Roth, Tim Schaefer, Robert G. Striegl, Kimberly P. Wickland, Tingjun Zhang
2018, Geophysical Research Letters (45) 1463-1471
Changing climate in northern regions is causing permafrost to thaw with major implications for the global mercury (Hg) cycle. We estimated Hg in permafrost regions based on in situ measurements of sediment total mercury (STHg), soil organic carbon (SOC), and the Hg to carbon ratio (RHgC) combined with maps of...
Can data from disparate long-term fish monitoring programs be used to increase our understanding of regional and continental trends in large river assemblages?
Timothy D. Counihan, Ian R. Waite, Andrew F. Casper, David L. Ward, Jennifer S. Sauer, Elise R. Irwin, Colin G. Chapman, Brian Ickes, Craig P. Paukert, John J. Kosovich, Jennifer M. Bayer
2018, PLoS ONE (13)
Understanding trends in the diverse resources provided by large rivers will help balance tradeoffs among stakeholders and inform strategies to mitigate the effects of landscape scale stressors such as climate change and invasive species. Absent a cohesive coordinated effort to assess trends in important large river resources, a logical starting...