Integration of genetic and demographic data to assess population risk in a continuously distributed species
Bradley C. Fedy, Jeffery R. Row, Sara J. Oyler-McCance
2017, Conservation Genetics (18) 89-104
The identification and demographic assessment of biologically meaningful populations is fundamental to species’ ecology and management. Although genetic tools are used frequently to identify populations, studies often do not incorporate demographic data to understand their respective population trends. We used genetic data to define subpopulations in a continuously distributed...
Predicting animal home-range structure and transitions using a multistate Ornstein-Uhlenbeck biased random walk
Greg A. Breed, Emily A. Golson, M. Tim Tinker
2017, Ecology (98) 32-47
The home‐range concept is central in animal ecology and behavior, and numerous mechanistic models have been developed to understand home range formation and maintenance. These mechanistic models usually assume a single, contiguous home range. Here we describe and implement a simple home‐range model that can accommodate multiple...
Prior knowledge-based approach for associating contaminants with biological effects: A case study in the St. Croix River basin, MN, WI, USA
Anthony L. Schroeder, Dalma Martinovic-Weigelt, Gerald T. Ankley, Kathy Lee, Natalia Garcia-Reyero, Edward J. Perkins, Heiko L. Schoenfuss, Daniel L. Villeneuve
2017, Environmental Pollution (221) 427-436
Evaluating potential adverse effects of complex chemical mixtures in the environment is challenging. One way to address that challenge is through more integrated analysis of chemical monitoring and biological effects data. In the present study, water samples from five locations near two municipal wastewater treatment plants in the St. Croix...
Tracer-based characterization of hyporheic exchange and benthic biolayers in streams
Julia L.A. Knapp, Ricardo Gonzalez-Pinzon, Jennifer D. Drummond, Laurel G. Larsen, Olaf A. Cirpka, Judson W. Harvey
2017, Water Resources Research (53) 1575-1594
Shallow benthic biolayers at the top of the streambed are believed to be places of enhanced biogeochemical turnover within the hyporheic zone. They can be investigated by reactive stream tracer tests with tracer recordings in the streambed and in the stream channel. Common in-stream measurements of such reactive tracers cannot...
The role of initial coherence and path materials in the dynamics of three rock avalanche case histories
Jordan Aaron, Scott McDougall, Jeffrey R. Moore, Jeffrey A. Coe, Oldrich Hungr
2017, Geoenvironmental Disasters (4)
BackgroundRock avalanches are flow-like landslides that can travel at extremely rapid velocities and impact surprisingly large areas. The mechanisms that lead to the unexpected mobility of these flows are unknown and debated. Mechanisms proposed in the literature can be broadly classified into those that rely...
Ground motion in the presence of complex Topography II: Earthquake sources and 3D simulations
Stephen H. Hartzell, Leonardo Ramirez-Guzman, Mark Meremonte, Alena L. Leeds
2017, Bulletin of the Seismological Society of America (107) 344-358
Eight seismic stations were placed in a linear array with a topographic relief of 222 m over Mission Peak in the east San Francisco Bay region for a period of one year to study topographic effects. Seventy‐two well‐recorded local earthquakes are used to calculate spectral amplitude ratios relative to a reference...
Paleoseismic potential of sublacustrine landslide records in a high-seismicity setting (south-central Alaska)
Nore Praet, Jasper Moernaut, Maarten Van Daele, Evelien Boes, Peter J. Haeussler, Michael Strupler, Sabine Schmidt, Michael G. Loso, Marc De Batist
2017, Marine Geology (384) 103-119
Sublacustrine landslide stratigraphy is considered useful for quantitative paleoseismology in low-seismicity settings. However, as the recharging of underwater slopes with sediments is one of the factors that governs the recurrence of slope failures, it is not clear if landslide deposits can provide continuous paleoseismic records in settings of frequent strong shaking. To...
Changes in aquatic vegetation and floodplain land cover in the Upper Mississippi and Illinois rivers (1989–2000–2010)
Nathan R. De Jager, Jason J. Rohweder
2017, Environmental Monitoring and Assessment (189) 1-14
Quantifying changes in the cover of river-floodplain systems can provide important insights into the processes that structure these landscapes as well as the potential consequences to the ecosystem services they provide. We examined net changes in 13 different aquatic and floodplain land cover classes using photo interpreted maps of the...
Temporal expansion of annual crop classification layers for the CONUS using the C5 decision tree classifier
Aaron M. Friesz, Bruce K. Wylie, Daniel M. Howard
2017, Remote Sensing Letters (8) 389-398
Crop cover maps have become widely used in a range of research applications. Multiple crop cover maps have been developed to suite particular research interests. The National Agricultural Statistics Service (NASS) Cropland Data Layers (CDL) are a series of commonly used crop cover maps for the conterminous United States (CONUS)...
The importance of quality control in validating concentrationsof contaminants of emerging concern in source and treateddrinking water samples
Angela L. Batt, Edward T. Furlong, Heath E. Mash, Susan T. Glassmeyer, Dana W. Kolpin
2017, Science of the Total Environment (579) 1618-1628
A national-scale survey of 247 contaminants of emerging concern (CECs), including organic and inorganic chemical compounds, andmicrobial contaminants, was conducted in source and treated drinkingwater samples from 25 treatment plants across the United States.Multiplemethodswere used to determine these CECs, including six analytical methods tomeasure 174 pharmaceuticals, personal care products, and pesticides. A three-component quality...
Ca isotopic geochemistry of an Antarctic aquatic system
W. Berry Lyons, Thomas D. Bullen, Kathleen A. Welch
2017, Geophysical Research Letters (44) 882-891
The McMurdo Dry Valleys, Antarctica, are a polar desert ecosystem. The hydrologic system of the dry valleys is linked to climate with ephemeral streams that flow from glacial melt during the austral summer. Past climate variations have strongly influenced the closed-basin, chemically stratified lakes on the valley floor. Results of...
Is “morphodynamic equilibrium” an oxymoron?
Zeng Zhou, Giovanni Coco, Ian Townend, Maitane Olabarrieta, Mick van der Wegen, Zheng Gong, Andrea D’Alpaos, Shu Gao, Bruce E. Jaffe, Guy R. Gelfenbaum, Qing He, Yaping Wang, Stefano Lanzoni, Zhengbing Wang, Han Winterwerp, Changkuan Zhang
2017, Earth-Science Reviews (165) 257-267
Morphodynamic equilibrium is a widely adopted yet elusive concept in the field of geomorphology of coasts, rivers and estuaries. Based on the Exner equation, an expression of mass conservation of sediment, we distinguish three types of equilibrium defined as static and dynamic, of which two different types exist. Other expressions...
Terrestrial ecosystem model performance in simulating productivity and its vulnerability to climate change in the northern permafrost region
Jianyang Xia, A. David McGuire, David Lawrence, Eleanor J. Burke, Guangsheng Chen, Xiaodong Chen, Christine Delire, Charles Koven, Andrew MacDougall, Shushi Peng, Annette Rinke, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Bertrand Decharme, Isabelle Gouttevin, Tomohiro Hajima, Daniel J. Hayes, Kun Huang, Duoying Ji, Gerhard Krinner, Dennis P. Lettenmaier, Paul A. Miller, John C. Moore, Benjamin Smith, Tetsuo Sueyoshi, Zheng Shi, Liming Yan, Junyi Liang, Lifen Jiang, Qian Zhang, Yiqi Luo
2017, Journal of Geophysical Research: Biogeosciences (122) 430-446
Realistic projection of future climate-carbon (C) cycle feedbacks requires better understanding and an improved representation of the C cycle in permafrost regions in the current generation of Earth system models. Here we evaluated 10 terrestrial ecosystem models for their estimates of net primary productivity (NPP) and responses to historical climate...
Pectoral fin contact as a mechanism for social bonding among dolphins
Kathleen Dudzinski, Christine Ribic
2017, Animal Behavior and Cognition (4) 30-48
Bottlenose dolphins are large-brained social mammals residing in a fission-fusion society with relationships that are established and maintained over decades. We examined a decade-long data set of inter-individual pectoral fin contact exchanges to better understand how dolphins share information via tactile contact. Sex and age are significant factors in pectoral...
A discrete stage-structured model of California newt population dynamics during a period of drought
Marjorie T. Jones, William R. Milligan, Lee B. Kats, Thomas L. Vandergon, Rodney L. Honeycutt, Robert N. Fisher, Courtney L. Davis, Timothy A. Lucas
2017, Journal of Theoretical Biology (414) 245-253
We introduce a mathematical model for studying the population dynamics under drought of the California newt (Taricha torosa), a species of special concern in the state of California. Since 2012, California has experienced a record-setting drought, and multiple studies predict drought conditions currently underway will persist and even increase in...
Mineral commodity summaries 2017
Joyce A. Ober
2017, Report
This report is the earliest Government publication to furnish estimates covering 2016 nonfuel mineral industry data. Data sheets contain information on the domestic industry structure, Government programs, tariffs, and 5-year salient statistics for more than 90 individual minerals and materials....
Tambora and the mackerel year: Phenology and fisheries during an extreme climate event
Karen E. Alexander, William B. Leavenworth, Carolyn Hall, Steven Mattocks, Steven M. Bittner, Emily Klein, Michelle D. Staudinger, Alexander Bryan, Julianne Rosset, Theodore V. Willis, Benjamin H. Carr, Adrian Jordaan
2017, Science Advances (3)
Global warming has increased the frequency of extreme climate events, yet responses of biological and human communities are poorly understood, particularly for aquatic ecosystems and fisheries. Retrospective analysis of known outcomes may provide insights into the nature of adaptations and trajectory of subsequent conditions. We consider the 1815 eruption of...
smwrGraphs—An R package for graphing hydrologic data, version 1.1.2
David L. Lorenz, Aliesha L. Diekoff
2017, Open-File Report 2016-1188
This report describes an R package called smwrGraphs, which consists of a collection of graphing functions for hydrologic data within R, a programming language and software environment for statistical computing. The functions in the package have been developed by the U.S. Geological Survey to create high-quality graphs for publication or...
Influence of poisoned prey on foraging behavior of ferruginous hawks
Nimish B. Vyas, Frank Kuncir, Criss C. Clinton
2017, The American Midland Naturalist (177) 75-83
We recorded 19 visits by ferruginous hawks (Buteo regalis) over 6 d at two black–tailed prairie dog (Cynomys ludovicianus) subcolonies poisoned with the rodenticide Rozol® Prairie Dog Bait (0.005% chlorophacinone active ingredient) and at an adjacent untreated subcolony. Before Rozol® application ferruginous hawks foraged in the untreated and treated subcolonies...
Colorado River fish monitoring in Grand Canyon, Arizona; 2002–14 humpback chub aggregations
William R. Persons, David R. Van Haverbeke, Michael J. Dodrill
2017, Open-File Report 2016-1177
The humpback chub (Gila cypha) is an endangered cyprinid species endemic to the Colorado River. The largest remaining population of the species spawns and rears in the Little Colorado River in Grand Canyon. Construction and operation of Glen Canyon Dam has altered the main-stem Colorado River in Glen and Grand...
Noble gas isotopes in mineral springs and wells within the Cascadia forearc, Washington, Oregon, and California
Patricia A. McCrory, James E. Constantz, Andrew G. Hunt
2017, Open-File Report 2016-1203
IntroductionThis U.S. Geological Survey report presents laboratory analyses along with field notes for an exploratory study to document the relative abundance of noble gases in mineral springs and water wells within the Cascadia forearc of Washington, Oregon, and California (fig. 1). This report describes 14 samples collected in 2014 and...
Paleomagnetism and 40Ar/39Ar geochronology of the Plio-Pleistocene Boring Volcanic Field: Implications for the geomagnetic polarity time scale and paleosecular variation
Jonathan T. Hagstrum, Robert J. Fleck, Russell C. Evarts, Andrew T. Calvert
2017, Physics of the Earth and Planetary Interiors (262) 101-115
Paleomagnetic directions and 40Ar/39Ar ages have been determined for samples of lava flows from the same outcrops, where possible, for 84 eruptive units ranging in age from 3200 ka to 60 ka within the Boring Volcanic Field (BVF) of the Pacific Northwest, USA. This study expands upon our previous results for the...
The use of data-mining techniques for developing effective decisionsupport systems: A case study of simulating the effects ofclimate change on coastal salinity intrusion
Paul Conrads, Jr. Edwin Roehl
2017, Book chapter, Integrated environmental modelling to solve real world problems: Methods, vision and challenges
Natural-resource managers and stakeholders face difficult challenges when managing interactions between natural and societal systems. Potential changes in climate could alter interactions between environmental and societal systems and adversely affect the availability of water resources in many coastal communities. The availability of freshwater in coastal streams can be threatened by...
In situ nuclear magnetic resonance response of permafrost and active layer soil in boreal and tundra ecosystems
Mason A. Kass, Trevor P Irons, Burke J. Minsley, Neal J. Pastick, Dana R N Brown, Bruce K. Wylie
2017, The Cryosphere (11) 2943-2955
Characterization of permafrost, particularly warm and near-surface permafrost which can contain significant liquid water, is critical to understanding complex interrelationships with climate change, ecosystems, and disturbances such as wildfires. Understanding the vulnerability and resilience of permafrost requires an interdisciplinary approach, relying on (for example) geophysical investigations, ecological characterization, direct observations,...
Linking dominant Hawaiian tree species to understory development in recovering pastures via impacts on soils and litter
Stephanie G. Yelenik
2017, Restoration Ecology (25) 42-52
Large areas of tropical forest have been cleared and planted with exotic grass species for use as cattle pasture. These often remain persistent grasslands after grazer removal, which is problematic for restoring native forest communities. It is often hoped that remnant and/or planted trees can jump-start forest succession; however, there...
