Hydrogeologic framework and selected components of the groundwater budget for the upper Umatilla River Basin, Oregon
Nora B. Herrera, Kate Ely, Smita Mehta, Adam J. Stonewall, John C. Risley, Stephen R. Hinkle, Terrence D. Conlon
2017, Scientific Investigations Report 2017-5020
Executive SummaryThis report presents a summary of the hydrogeology of the upper Umatilla River Basin, Oregon, based on characterization of the hydrogeologic framework, horizontal and vertical directions of groundwater flow, trends in groundwater levels, and components of the groundwater budget. The conceptual model of the groundwater flow system integrates available...
A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems
Sean M. Hitchman, Martha E. Mather, Joseph M. Smith, Jane S. Fencl
2017, Global Change Biology (24) 308-321
Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting...
Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom
Barry H. Rosen, Timothy W. Davis, Christopher J. Gobler, Benjamin J. Kramer, Keith A. Loftin
2017, Open-File Report 2017-1054
The Lake Okeechobee and the Okeechobee Waterway (Lake Okeechobee, the St. Lucie Canal and River, and the Caloosahatchee River) experienced an extensive harmful algal bloom within Lake Okeechobee, the St. Lucie Canal and River and the Caloosahatchee River in 2016. In addition to the very visible bloom of the cyanobacterium...
Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata)
Daniel J. Newhouse, Erik K. Hofmeister, Christopher N. Balakrishnan
2017, Royal Society Open Science (4) 1-12
West Nile virus (WNV) is a widespread arbovirus that imposes a significant cost to both human and wildlife health. WNV exists in a bird-mosquito transmission cycle in which passerine birds act as the primary reservoir host. As a public health concern, the mammalian immune response to WNV has been studied...
Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange
Susan Knowles, Steve K. Windels, Marie Adams, Jeffrey S. Hall
2017, Journal of Wildlife Diseases (53) 925-929
Oral papillomatosis was diagnosed in a gray wolf (Canis lupus) with sarcoptic mange from Minnesota, USA found dead in February 2015. Intranuclear inclusion bodies were evident histologically, and papillomaviral antigens were confirmed using immunohistochemistry. Sequencing of the L1 papillomavirus gene showed closest similarity to Lambdapapillomavirus 2....
Spectral matching techniques (SMTs) and automated cropland classification algorithms (ACCAs) for mapping croplands of Australia using MODIS 250-m time-series (2000–2015) data
Pardhasaradhi G. Teluguntla, Prasad S. Thenkabail, Jun Xiong, Murali Krishna Gumma, Russell G. Congalton, Adam Oliphant, Justin Poehnelt, Kamini Yadav, Mahesh N. Rao, Richard Massey
2017, International Journal of Digital Earth (10) 944-977
Mapping croplands, including fallow areas, are an important measure to determine the quantity of food that is produced, where they are produced, and when they are produced (e.g. seasonality). Furthermore, croplands are known as water guzzlers by consuming anywhere between 70% and 90% of all human water use globally. Given...
Scenario Evaluator for Electrical Resistivity survey pre-modeling tool
Neil C. Terry, Frederick D. Day-Lewis, Judith L. Robinson, Lee D. Slater, Keith J. Halford, Andrew Binley, John W. Lane Jr., Dale D. Werkema
2017, Groundwater (55) 885-890
Geophysical tools have much to offer users in environmental, water resource, and geotechnical fields; however, techniques such as electrical resistivity imaging (ERI) are often oversold and/or overinterpreted due to a lack of understanding of the limitations of the techniques, such as the appropriate depth intervals or resolution of the methods....
Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird
Lisa H. Crampton, Kevin W. Brinck, Kyle E. Pias, Barbara A. P. Heindl, Thomas Savre, Julia S. Diegmann, Eben H. Paxton
2017, Biodiversity and Conservation (26) 1525-1539
Accurate estimates of the distribution and abundance of endangered species are crucial to determine their status and plan recovery options, but such estimates are often difficult to obtain for species with low detection probabilities or that occur in inaccessible habitats. The Puaiohi (Myadestes palmeri) is a cryptic species...
Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California
Elena West, Erik K. Hofmeister, M. Zach Peery
2017, Journal of Wildlife Diseases (53) 582-585
West Nile virus (WNV) was first detected in New York in 1999 and, during its expansion across the continental US, southern Canada, and Mexico, members of the Corvidae (ravens, crows, magpies, and jays) were frequently infected and highly susceptible to the virus. As part of a behavioral study of Steller's...
Human infectious disease burdens decrease with urbanization but not with biodiversity
Chelsea L. Wood, Alex McInturff, Hillary S. Young, DoHyung Kim, Kevin D. Lafferty
2017, Philosophical Transactions of the Royal Society B: Biological Sciences (372)
nfectious disease burdens vary from country to country and year to year due to ecological and economic drivers. Recently, Murray et al. (Murray CJ et al. 2012 Lancet 380, 2197–2223. (doi:10.1016/S0140-6736(12)61689-4)) estimated country-level morbidity and mortality associated with a variety of factors, including infectious diseases, for the years...
Investigation of plastic debris ingestion by four species of sea turtles collected as bycatch in pelagic Pacific longline fisheries
Katherine E. Clukey, Christopher A. Lepczyk, George H. Balazs, Thierry M. Work, Jennifer M. Lynch
2017, Marine Pollution Bulletin (120) 117-125
Ingestion of marine debris is an established threat to sea turtles. The amount, type, color and location of ingested plastics in the gastrointestinal tracts of 55 sea turtles from Pacific longline fisheries from 2012 to 2016 were quantified, and compared across species, turtle length, body condition, sex, capture location, season...
Conservation, biodiversity and infectious disease: scientific evidence and policy implications
Hillary S. Young, Chelsea L. Wood, A. Marm Kilpatrick, Kevin D. Lafferty, Charles L. Nunn, Jeffrey R. Vincent
2017, Philosophical Transactions of the Royal Society B: Biological Sciences (372) 1-4
Habitat destruction and infectious disease are dual threats to nature and people. The potential to simultaneously advance conservation and human health has attracted considerable scientific and popular interest; in particular, many authors have justified conservation action by pointing out potential public health benefits . One major focus of this...
Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses
Elsa M. Cardenas-Canales, Lisa L. Wolfe, Tripp. Daniel W., Tonie E. Rocke, Rachel C. Abbott, Michael W. Miller
2017, Journal of Wildlife Diseases (53) 916-920
We confirmed safety and immunogenicity of mass-produced vaccine baits carrying an experimental, commercial-source plague vaccine (RCN-F1/V307) expressing Yersinia pestis V and F1 antigens. Forty-five juvenile black-tailed prairie dogs (Cynomys ludovicianus) were randomly divided into three treatment groups (n=15 animals/group). Animals in the first group received one standard-dose vaccine bait (5×107...
Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah
Melissa Lund, Valerie I. Shearn-Bochsler, Robert J. Dusek, Jan Shivers, Erik K. Hofmeister
2017, Applied and Environmental Microbiology (83)
In November and December of 2013, a large mortality event involving 15,000 - 20,000 eared grebes (Podiceps nigricollis) occurred at the Great Salt Lake (GSL), UT. The onset of the outbreak in grebes was followed by a mortality event in > 86 bald eagles (Haliaeetus leucocephalus). During the die-off, West...
Book review: Reptiles and amphibians: Self-assessment color review
David E. Green
2017, Journal of Wildlife Diseases (53) 706-707
No abstract available.Book information: Reptiles and Amphibians: Self-Assessment Color Review. 2nd Edition. By Fredric L. Frye. CRC Press, Taylor and Francis Group, Boca Raton, Florida USA. 2015. 252 pp. ISBN 9781482257601....
Assessment of undiscovered oil and gas resources in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas, 2017
Kristen R. Marra, Stephanie B. Gaswirth, Christopher J. Schenk, Heidi M. Leathers-Miller, Timothy R. Klett, Tracey J. Mercier, Phuong A. Le, Marilyn E. Tennyson, Thomas M. Finn, Sarah J. Hawkins, Michael E. Brownfield
2017, Fact Sheet 2017-3029
Using a geology-based assessment methodology, the U.S. Geological Survey estimated mean resources of 4.2 billion barrels of oil and 3.1 trillion cubic feet of gas in the Spraberry Formation of the Midland Basin, Permian Basin Province, Texas....
Protozoal hepatitis in a western burrowing owl (Athene cunicularia hypugaea)
J. Christian Franson
2017, Southwestern Naturalist (62) 75-77
A western burrowing owl (Athene cunicularia hypugaea) found dead in southern California had many light-colored lesions visible grossly on its liver, and histopathology revealed extensive necrosis throughout the hepatic parenchyma. Single-celled organisms were seen in clear spaces within the areas of necrosis. The owl was diagnosed with protozoal hepatitis....
Steady state fractionation of heavy noble gas isotopes in a deep unsaturated zone
Alan M. Seltzer, Jeffrey P. Severinghaus, Brian J. Andraski, David A. Stonestrom
2017, Water Resources Research (53) 2716-2732
To explore steady state fractionation processes in the unsaturated zone (UZ), we measured argon, krypton, and xenon isotope ratios throughout a ∼110 m deep UZ at the United States Geological Survey (USGS) Amargosa Desert Research Site (ADRS) in Nevada, USA. Prior work has suggested that gravitational settling should create a...
Relationships between gas field development and the presence and abundance of pygmy rabbits in southwestern Wyoming
Stephen S. Germaine, Sarah K. Carter, Drew A. Ignizio, Aaron T. Freeman
2017, Ecosphere (8)
More than 5957 km2 in southwestern Wyoming is currently covered by operational gas fields, and further development is projected through 2030. Gas fields fragment landscapes through conversion of native vegetation to roads, well pads, pipeline corridors, and other infrastructure elements. The sagebrush steppe landscape where most of this development is occurring...
Delineation of marsh types and marsh-type change in coastal Louisiana for 2007 and 2013
Stephen B. Hartley, Brady R. Couvillion, Nicholas M. Enwright
2017, Scientific Investigations Report 2017-5044
The Bureau of Ocean Energy Management researchers often require detailed information regarding emergent marsh vegetation types (such as fresh, intermediate, brackish, and saline) for modeling habitat capacities and mitigation. In response, the U.S. Geological Survey in cooperation with the Bureau of Ocean Energy Management produced a detailed change classification of...
A long-term copper exposure in a freshwater ecosystem using lotic mesocosms: Invertebrate community responses
Sandrine Joachim, Helene Roussel, Jean-Marc Bonzom, Eric Thybaud, Christopher A. Mebane, Paul Van den Brink, Laury Gauthier
2017, Environmental Toxicology and Chemistry (36) 2698-2714
A lotic mesocosm study was carried out in 20-m-long channels, under continuous, environmentally realistic concentrations of copper (Cu) in low, medium, and high exposures (nominally 0, 5, 25, and 75 μg L−1; average effective concentrations <0.5, 4, 20, and 57 μg L−1 respectively) for 18 mo. Total abundance, taxa richness, and community structure of zooplankton, macroinvertebrates,...
Measuring surface-water loss in Honouliuli Stream near the ‘Ewa Shaft, O‘ahu, Hawai‘i
Sarah N. Rosa
2017, Scientific Investigations Report 2017-5042
The Honolulu Board of Water Supply is currently concerned with the possibility of bacteria in the pumped water of the ‘Ewa Shaft (State well 3-2202-21). Groundwater from the ‘Ewa Shaft could potentially be used to meet future potable water needs in the ‘Ewa area on the island of O‘ahu. The...
An accurate method for measuring triploidy of larval fish spawns
Jill A. Jenkins, Rassa O. Draugelis-Dale, Robert Glennon, Anita M. Kelly, Bonnie L. Brown, John Morrison
2017, North American Journal of Aquaculture (79) 224-237
A standard flow cytometric protocol was developed for estimating triploid induction in batches of larval fish. Polyploid induction treatments are not guaranteed to be 100% efficient, thus the ability to quantify the proportion of triploid larvae generated by a particular treatment helps managers to stock high-percentage spawns and researchers to...
Exogenous thyroid hormones regulate the activity of citrate synthase and cytochrome c oxidase in warm- but not cold-acclimated lake whitefish (Coregonus clupeaformis)
Megan A. Zak, Amy M. Regish, Stephen D. McCormick, Richard G. Manzon
2017, General and Comparative Endocrinology (247) 215-222
Thermal acclimation is known to elicit metabolic adjustments in ectotherms, but the cellular mechanisms and endocrine control of these shifts have not been fully elucidated. Here we examined the relationship between thermal acclimation, thyroid hormones...
Sedimentological and petrographic analysis of drill core FC77-1 from the flank of the central uplift, Flynn Creek impact structure, Tennessee
D. R. Adrian, D. T. King, S. J. Jaret, J. Ormo, L. W. Petruny, Justin Hagerty, Tenielle Gaither
2017, Meteoritics & Planetary Science (MAPS) (53) 857-873
Drill core FC 77‐1 on the flank of the central uplift, Flynn Creek impact structure, Tennessee, contains 175 m of impact breccia lying upon uplifted Lower Paleozoic carbonate target stratigraphy. Sedimentological analysis of this 175‐m interval carbonate breccia shows that there are three distinct sedimentological units. In stratigraphic...