Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub
Sung-mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P. Smith, Erica Carcelén, Katie Yan, Samantha J Bents, John Levander, Jessi Espino, Joseph C Lemaitre, Koji Sato, Clif D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido Espana, Sean Cavany, Sean M Moore, Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha R Bandekar, Anass Bouchnita, Spencer J Fox, Lauren A. Meyers, Przemyslaw Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning Mortveit, Amanda Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Lewis, Madhav Marathe, Harry Hochheiser, Michael C. Runge, Katriona Shea, Shaun Truelove, Cécile Viboud, Justin Lessler
2024, PLOS Medicine (21)
BackgroundCoronavirus Disease 2019 (COVID-19) continues to cause significant hospitalizations and deaths in the United States. Its continued burden and the impact of annually reformulated vaccines remain unclear. Here, we present projections of COVID-19 hospitalizations and deaths in the United States for the next 2 years under 2...
Structurally selective ozonolysis of p-phenylenediamines and toxicity in coho salmon and rainbow trout
Linna Xie, Jie Yu, Pranav Nair, Jianxian Sun, Holly Barrett, Oliver Meek, Xing Qian, Diwen Yang, Lisa V. Kennedy, Derek Kozakiewicz, Chunyan Hao, John Hansen, Justin Blaine Greer, Jonathan P.D. Abbatt, Hui Peng
2024, Preprint
The tire rubber-derived ozonation product of N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD), N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine-quinone (6PPD-Q), was recently discovered to cause acute mortality in Coho Salmon (Oncorhynchus kisutch). para-Phenylenediamines (PPDs) with variable side chains distinct from 6PPD have been identified as potential replacement commercial antioxidants, but their structure-related ozone reactivities and toxicities remain unexplored. We herein...
Comparison of two methods to detect the northwestern pond turtle (Actinemys marmorata) and the invasive American bullfrog (Lithobates catesbeianus) in interior northern California
Brian J. Halstead, Patrick M. Kleeman, Caren S. Goldberg, Jonathan P. Rose
2024, Chelonian Conservation and Biology (23) 66-74
Knowledge about the distributions of species and the variables influencing their occurrence is important for their management and conservation, but factors affecting occurrence can vary across the range of a species. Northwestern pond turtles (Actinemys marmorata) are widespread generalist turtles, but are nonetheless...
Biological soil crusts are more prevalent in warmer and drier environments within the Great Basin ecoregion: Implications for managing annual grass invasion
Lea A. Condon, John B. Bradford, Peter S. Coates
2024, Restoration Ecology (32)
Biological soil crusts (biocrusts) can thrive under environmental conditions that are stressful for vascular plants such as high temperatures and/or extremely low moisture availability. In these settings, and in the absence of disturbance, cover of biocrusts commonly exceeds cover of vascular plants. Arid landscapes...
Evolving wildlife management cultures of governance through Indigenous Knowledges and perspectives
Jonathan J. Fisk, Kirsten Leong, Richard Eugene Waggaman Berl, Jonathan W. Long, Adam Landon, Melinda Adams, Don L. Hankins, Christopher J. Williams , Frank K. Lake, Jonathan Salerno
2024, Journal of Wildlife Management (88)
Within governance agencies, academia, and communities alike, there are increasing calls to recognize the value and importance of culture within social-ecological systems and to better implement Indigenous sciences in research, policy, and management. Efforts thus far have raised questions about the best ethical practices...
Nutrient chemistry in the Elizabeth Lake subwatershed—Effects of onsite wastewater treatment systems on groundwater and lake water quality, Los Angeles County, California
Adelia M McGregor, Joseph L. Domagalski, Krishangi D. Groover, Angela M. Hansen, Anthony A. Brown
2024, Scientific Investigations Report 2024-5012
Nutrient (nitrogen [N] and phosphorus [P] chemistry) downgradient from onsite wastewater treatment system (OWTS) was evaluated with a groundwater study in the area surrounding Elizabeth Lake, the largest of three sag lakes within the Santa Clara River watershed of Los Angeles County, California.Elizabeth Lake is listed on the “303 (d)...
Ecology shapes the genomic and biosynthetic diversification of Streptomyces bacteria from insectivorous bats
Manuela Montoya-Giraldo, Kathryn R. Piper, Odion O. Ikhimiukor, Cooper J. Park, Nicole A. Caimi, Debbie C. Buecher, Ernest W. Valdez, Diana E. Northup, Cheryl P. Andam
2024, Microbial Genomics (16)
Streptomyces are prolific producers of secondary metabolites from which many clinically useful compounds have been derived. They inhabit diverse habitats but have rarely been reported in vertebrates. Here, we aim to determine to what extent the ecological source (bat host species and cave sites) influence the genomic and biosynthetic diversity...
Hunting mode and habitat selection mediate the success of human hunters
Kaitlyn M. Gaynor, Michael C Mcinturff, Briana L. Abrahms, Alison M. Smith, Justin S. Brashares
2024, Movement Ecology (12)
BackgroundAs a globally widespread apex predator, humans have unprecedented lethal and non-lethal effects on prey populations and ecosystems. Yet compared to non-human predators, little is known about the movement ecology of human hunters, including how hunting behavior interacts with the environment.MethodsWe characterized...
Hydrologic study of green infrastructure in poorly drained urbanized soils at RecoveryPark, Detroit, Michigan, 2014–21
Ralph J. Haefner, Christopher J. Hoard, William Shuster
2024, Scientific Investigations Report 2024-5018
Uncontrolled stormwater runoff volume is a legacy stressor on sewer-system capacity that is further compromised by the effects of aging infrastructure. Green stormwater infrastructure (GSI) has been used in a variety of designs and configurations (for example, bioretention) with the goal of increasing evapotranspiration and infiltration in the local water...
Peak streamflow trends in Missouri and their relation to changes in climate, water years 1921–2020
Mackenzie K. Marti, David C. Heimann
2024, Scientific Investigations Report 2023-5064-F
This report characterizes changes in peak streamflow in Missouri and the relation of these changes to climatic variability, and provides a foundation for future studies that can address nonstationarity in peak-streamflow frequency analysis in Missouri. Records of annual peak and daily streamflow at streamgages and gridded monthly climatic data (observed...
High-quality, chromosome-level reference genomes of the viviparous Caribbean skinks Spondylurus nitidus and S. culebrae
Danielle Rivera, James B. Henderson, Athena W. Lam, Nathan J. Hostetter, Jaime A. Collazo, Rayna C. Bell
2024, Genome Biology and Evolution (16)
New World mabuyine skinks are a diverse radiation of morphologically cryptic lizards with unique reproductive biologies. Recent studies examining population-level data (morphological, ecological, and genomic) have uncovered novel biodiversity and phenotypes, including the description of dozens of new species and insights into the evolution of their highly complex placental structures....
A toolbox for improving reclamation success: Joint USGS-BLM report establishes best management practices for oil and gas operations, monitoring methods, and standards
Michael C. Duniway, Meredith A. Hartwell
2024, Reclamation Matters 40-41
The U. S. Geological Survey, in partnership with the Bureau of Land Management, recently published an oil and gas reclamation techniques and methods report that provides land managers and oil and gas operators specific guidance and best management practices for development impacts, successfully reclaiming disturbed lands during and after oil...
Vegetation loss following vertical drowning of Mississippi River deltaic wetlands leads to faster microbial decomposition and decreases in soil carbon
Courtney Creamer, Mark Waldrop, Camille Stagg, Kristen L. Manies, Melissa Millman Baustian, Claudia Laurenzano, Tiong Gim Aw, Monica Haw, Sergio Merino, Donald R. Schoolmaster Jr., Sabrina N. Sevilgen, Rachel Katherine Villani, Eric Ward
2024, JGR Biogeosciences (129)
Wetland ecosystems hold nearly a third of the global soil carbon pool, but as wetlands rapidly disappear the fate of this stored soil carbon is unclear. The aim of this study was to quantify and then link potential rates of microbial decomposition after vertical drowning of vegetated tidal marshes in...
Multi-scale effects of behavioral movement deterrents on invasive carp metapopulations
Donald R. Schoolmaster Jr., Aaron R. Cupp, Alison A. Coulter, Richard A. Erickson
2024, Biological Invasions (26) 1957-1968
Behavioral deterrents of among-pool movement represent a promising tool for controlling invasive fish populations. To date, much of the research in this area has been focused on the direct effectiveness of different methods of deterrence. However, the effect of these structures on populations in spatially complex habitats is unknown. We...
Paleoenvironmental and paleoecological dynamics of the U.S. Atlantic Coastal Plain prior to and during the Paleocene-Eocene Thermal Maximum
Monika Doubrawa, Peter Stassen, Marci M. Robinson, Robert P. Speijer
2024, Journal of Foraminiferal Research (54) 143-171
We studied the rapid paleo-environmental changes and the corresponding biotic responses of benthic foraminifera of a shallow shelf site during the late Paleocene and the Paleocene-Eocene Thermal Maximum (PETM). The PETM is globally characterized by a negative δ13C excursion in marine and terrestrial sediments. Isotope data from the Atlantic Coastal...
Following the tug of the audience from complex to simplified hazards maps at Cascade Range volcanoes
Carolyn L. Driedger, David W. Ramsey, William E. Scott, Lisa M. Faust, Joseph A. Bard, Patti Wold
2024, Journal of Applied Volcanology (13)
Volcano-hazard maps are broadly recognized as important tools for forecasting and managing volcanic crises and for disseminating spatial information to authorities and people at risk. As scientists, we might presume that hazards maps can be developed at the time and with the methods of our discretion, yet the co-production of...
Benthic foraminiferal community changes across the Miocene climatic optimum Identified by SHEBI analysis (SHE analysis for biozone identification), Calvert Cliffs, Maryland, USA
Seth R. Sutton, Stephen J. Culver, Lee-Ann Hayek, David J. Mallinson, Marci M. Robinson, Harry J. Dowsett, Martin A. Buzas
2024, Journal of Foraminiferal Research (54) 188-197
The Calvert Cliffs, MD, an iconic section of Middle Miocene strata, have been well studied both paleontologically and stratigraphically for over a century. However, few studies of the Calvert Cliffs have looked at the benthic foraminifera. This study uses SHEBI analysis (SHE analysis for biozone identification) of benthic foraminiferal assemblages...
Remotely mapping gullying and incision in Maryland Piedmont headwater streams using repeat airborne lidar
Marina J. Metes, Andrew J. Miller, Matthew E. Baker, Kristina G. Hopkins, Daniel K. Jones
2024, Geomorphology (455)
Headwater streams can contribute significant amounts of fine sediment to downstream waterways, especially when severely eroded and incised. Potential upstream sediment source identification is crucial for effective management of water quality, aquatic habitat, and sediment loads in a watershed. This...
Basin-scale responses of groundwater-resource quality to drought and recovery, San Joaquin Valley, California
Zeno Levy, Bryant Jurgens, Kirsten Faulkner, Jennifer S. Harkness, Miranda S. Fram
2024, Hydrological Processes (38)
Groundwater-resource quality is assumed to be less responsive to drought compared to that of surface water due to relatively long transit times of recharge to drinking-supply wells. Here, we evidence dynamic perturbations in aquifer pressure dynamics during drought and subsequent recovery periods cause dramatic...
Stream water sourcing from high-elevation snowpack inferred from stable isotopes of water: A novel application of d-excess values
Matthias Sprenger, Rosemary W.H. Carroll, David W Marchetti, Carleton R. Bern, Harsh Beria, Wendy Brown, Alexander Newman, Curtis Beutler, Kenneth H. Williams
2024, EUGsphere (28) 1711-1723
About 80 % of the precipitation at the Colorado River's headwaters is snow, and the resulting snowmelt-driven hydrograph is a crucial water source for about 40 million people. Snowmelt from alpine and subalpine snowpack contributes substantially to groundwater recharge and river flow. However, the dynamics...
Late Triassic paleogeography of southern Laurentia and its fringing arcs: Insights from detrital zircon U-Pb geochronology and Hf isotope geochemistry, Auld Lang Syne basin (Nevada, USA)
Theresa Maude Schwartz, Sandra J. Wyld, Joseph P. Colgan, Douglas W. Prihar
2024, GSA Bulletin (136) 4595-4615
Fluvial strata of the Upper Triassic Chinle Formation and Dockum Group, exposed across the Western Interior of North America, have long been interpreted to record a transcontinental river system that connected the ancestral Ouachita orogen of Texas and Oklahoma, USA, to the Auld...
Holocene foraminifera, climate, and decelerating rise in sea level on the mud patch, southern New England continental shelf
Kenneth G. Miller, James V. Browning, Lloyd D Keigwin, Jason Chaytor, Emily Schneider, Matthew Richtmyer, W. John Schmelz
2024, Journal of Foraminiferal Research (54) 172-187
We examined Holocene benthic foraminiferal biofacies, % planktonic foraminifera, and lithofacies changes from New England mud patch cores and present a relative sea-level (RSL) record to evaluate evolution of these rapidly deposited (30–79 cm/kyr) muds. Sandy lower Holocene sections are dominated by Bulimina marginata....
Detrital zircons and the magmatic history of Viti Levu, Fiji
Allen Stork, James B Gill, Erin Todd, Elizabeth Kathleen Drewes-Todd
2024, Australian Journal of Earth Sciences (71) 600-614
We integrate the existing detrital zircon data from multiple modern river sediment samples on Viti Levu, Fiji, with the most current available geological and topographic mapping of the respective river drainage basins to compare detrital populations with potential bedrock sources. The temporal and spatial variations in zircon geochemistry supplement what...
Passive acoustic monitoring and convolutional neural networks facilitate high-resolution and broadscale monitoring of a threatened species
Adam Duarte, Matthew J. Weldy, Damon B. Lesmeister, Zachary J. Ruff, Julianna Jenkins, Jonathon Joseph Valente, Matthew G. Betts
2024, Ecological Indicators (162)
Population monitoring is an essential component of biodiversity conservation and management, but low detection probabilities for rare and/or cryptic species makes estimating abundance and occupancy challenging. Passive acoustic monitoring combined with machine learning algorithms represents a potential path forward to effectively and efficiently monitor the occurrence of rare vocalizing species...
Bringing traits back in the equation: A roadmap to understand species redistribution
Lise Comte, Romain Bertrand, Sarah E. Diamond, Lesley T. Lancaster, Malin Pinsky, Brett R. Scheffers, J. Alex Baecher, R.M.W.J. Bandara, I-Ching Chen, Jake A. Lawlor, Nikki Moore, Brunno F. Oliveira, Jerome Murienne, Jonathan Rolland, Madeleine A. Rubenstein, Jennifer Sunday, Laura Thompson, Fabricio Villalobos, Sarah R. Weiskopf, Jonathan Lenoir
2024, Global Change Biology (30)
Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility...
