Evaluation of metrics and thresholds for use in national-scale river harmful algal bloom assessments
Sarah M. Stackpoole, Jacob Aaron Zwart, Jennifer L. Graham, Judson Harvey, Noah Schmadel, Jennifer C. Murphy
2024, Ecological Indicators (162)
The spatiotemporal distribution of harmful algal blooms (HABs) in rivers remains poorly understood, and there is an urgent need to develop a consistent set of metrics to better document HAB occurrences and forecast future events. Using data from seven sites in...
State of the data: Assessing the FAIRness of USGS data
Vivian B. Hutchison, Tamar Norkin, Lisa Zolly, Leslie Hsu
2024, Data Science Journal (23)
In response to recent shifts towards open science that emphasize transparency, reproducibility, and access to research data, the US Geological Survey (USGS) conducted a study to assess the degree to which USGS data assets meet the FAIR data principles (Findable, Accessible, Interoperable, and Reusable). The USGS designed and applied a...
Status of water quality in groundwater resources used for drinking-water supply in the southeastern San Joaquin Valley, 2013–15—California GAMA Priority Basin Project
Karen R. Burow, Jennifer L. Shelton, Miranda S. Fram
2024, Scientific Investigations Report 2024-5009
The California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP) investigated water quality of groundwater resources used for drinking-water supplies in the Madera-Chowchilla, Kings, Kaweah, Tule, and Tulare Lake groundwater subbasins of the southeastern San Joaquin Valley during 2013–15. The study focused primarily on groundwater resources used for...
Survival and growth of larval Pallid Sturgeon are improved by a live diet
Hilary B. Treanor, Christopher S. Guy, Jason E. Ilgen, Wendy M. Sealey, Addison T. Dove, Molly A. H. Webb
2024, North American Journal of Aquaculture (86) 332-339
ObjectiveConservation propagation facilities in the upper basin of the Missouri River are currently experiencing inconsistent survival of first-feeding larval Pallid Sturgeon Scaphirhynchus albus among genetic families (i.e., distinct male–female pairings). The inconsistent survival can have unintended negative consequences for genetic representation of Pallid Sturgeon that are returned to the...
Genetic evidence for the presence of wild-caught sturgeons in commercial markets in Georgia
Tamar Beridze, Shannon L. White, David C. Kazyak, Levan Ninua, Dewayne A. Fox, Arun Sethuraman, Tamar Edisherashvili, Bianca Roberts, Mikheil Potskhishvili, Michelle Klailova, Cort Anderson
2024, Diversity (16)
Sturgeons (Family: Acipenseridae) are among the most endangered taxa worldwide. Significant resources have been invested into the conservation of global sturgeon populations, including the development of commercial aquaculture programs. These programs are intended to improve conservation outcomes by reducing the harvest of wild populations while still meeting commercial demand for...
Cytology in cnidaria using Exaiptasia as a model
Thierry M. Work, Chutimon Singarkhan, Tina Weatherby
2024, Diseases of Aquatic Organisms (158) 37-53
A need exists for additional methods to examine cnidaria at the cellular level to aid our understanding of health, anatomy, and physiology of this important group of organisms. This need is particularly acute given that disease is emerging as a major factor in declines of ecologically important functional groups such...
Atmospheric river activity during the late Holocene exceeds modern range of variability in California
Clarke Alexandra Knight, Lysanna Anderson, Liubov S. Presnetsova, Marie Rhondelle Champagne, David Wahl
2024, Nature Communications Earth and Environment (5)
Atmospheric rivers are associated with some of the largest flood-producing precipitation events in western North America, particularly California. Insight into past extreme precipitation can be reconstructed from sedimentary archives on millennial timescales. Here we document atmospheric river activity near Leonard Lake, California, over 3,200 years, using...
Flexible migration and habitat use strategies of an endangered waterbird during hydrological drought
Aaron T. Pearse, Andrew J. Caven, David M. Baasch, Mark T. Bidwell, John A Conkin, David A. Brandt
2024, Conservation Science and Practice (6)
Wildlife species confront threats from climate and land use change, exacerbating the influence of extreme climatic events on populations and biodiversity. Migratory waterbirds are especially vulnerable to hydrological drought via reduced availability of surface water habitats. We assessed how whooping cranes (Grus americana) modified...
Ecological inferences on invasive carp survival using hydrodynamics and egg drift models
Ruichen Xu, Duane Chapman, Caroline M. Elliott, Bruce Call, Robert B. Jacobson, Binbin Yang
2024, Scientific Reports (14)
Bighead carp (Hypophthalmichthys nobilis), silver carp (H. molitrix), black carp (Mylopharyngodon piceus), and grass carp (Ctenopharyngodon idella), are invasive species in North America. However, they hold significant economic importance as food sources in China. The drifting stage of carp eggs has received great attention because egg...
Bathymetric and velocimetric surveys at highway bridges crossing the Missouri and Mississippi Rivers on the periphery of Missouri, June 13–22, 2022
Richard J. Huizinga
2024, Scientific Investigations Report 2024-5032
Bathymetric and velocimetric data were collected by the U.S. Geological Survey, in cooperation with the Missouri Department of Transportation, near seven bridges at six highway crossings of the Missouri and Mississippi Rivers on the periphery of Missouri from June 13–22, 2022. A multibeam echosounder mapping system was used to obtain...
A hierarchical model for eDNA fate and transport dynamics accommodating low concentration samples
Ben Augustine, Patrick Ross Hutchins, Devin Nicole Jones-Slobodian, Jacob R. Williams, Eric Leinonen, Adam Sepulveda
2024, Preprint
Environmental DNA (eDNA) sampling is an increasingly important tool for answering ecological questions and informing aquatic species management; however, several factors currently limit the reliability of ecological inference from eDNA sampling. Two particular challenges are 1) determining species source location(s) and 2) accurately and precisely measuring low concentration eDNA samples...
Genetic structure of restored Brook Trout populations in the Southern Appalachian Mountains indicates successful reintroductions
Rebecca J. Smith, David C. Kazyak, Matt A. Kulp, Barbara A. Lubinski, Benjamin M. Fitzpatrick
2024, Conservation Genetics (25) 1007-1020
Wildlife reintroduction is an important conservation tool for threatened species, yet identifying appropriate source populations poses a challenge. In particular, the possibility of outbreeding depression is cited as a constraint limiting the range of candidate source populations for translocation. When multiple source lineages are mixed during reintroduction, genetic monitoring is...
Environmental DNA dynamics of three species of unionid freshwater mussels
Dannise Ruiz-Ramos, Nathan Thompson, Catherine A. Richter, Megan C. Voshage, Theresa M. Schreier, Christopher M. Merkes, Katy E. Klymus
2024, Environmental DNA (6)
North American freshwater mussels are of special conservation concern due to their high endemism and the multiple anthropogenic stressors affecting them. Of the over 300 species in North America, nearly one third of these species are federally listed as threatened or endangered. Environmental DNA (eDNA) analysis has been successful in...
Spatiotemporal patterns in habitat use of natal and non-natal adult Atlantic sturgeon in two spawning rivers
Shannon L. White, Matthew W. Breece, Dewayne A. Fox, David C. Kazyak, Amanda Higgs, Ian A Park, Cassia Busch, Barbara A. Lubinski, Robin L. Johnson, Amy Welsh
2024, Conservation Genetics (12)
BackgroundMonitoring movement across an organism’s ontogeny is often challenging, particularly for long-lived or wide-ranging species. When empirical data are unavailable, general knowledge about species’ ecology may be used to make assumptions about habitat use across space or time. However, inferences...
Characteristics of debris-flow-prone watersheds and debris-flow-triggering rainstorms following the Tadpole Fire, New Mexico, USA
Luke A. McGuire, Francis K. Rengers, Ann Youberg, Alexander Gorr, Olivia J. Hoch, Rebecca Beers, Ryan Porter
2024, Natural Hazards and Earth System Sciences (24) 1357-1379
Moderate- or high-severity fires promote increases in runoff and erosion, leading to a greater likelihood of extreme geomorphic responses, including debris flows. In the first several years following fire, the majority of debris flows initiate when runoff rapidly entrains sediment on steep slopes. From...
Carotenoid skin ornaments as flexible indicators of male foraging behavior in a marine predator: Variation among Mexican colonies of brown booby (Sula leucogaster)
Nathan P. Michael, Roxana Torres, Andreanna J. Welch, Jonathan J. Felis, Mario Erandi Bonillas-Monge, Josh Adams, Samantha Hodgson, Laura Lopez-Marques, Alejadro Martínez-Flores, Gala Enidh Castro-Mejias, Anne E. Wiley
2024, Marine Biology (171)
Carotenoid-dependent ornaments can reflect animals’ diet and foraging behaviors. However, this association should be spatially flexible and variable among populations to account for geographic variation in optimal foraging behaviors. We tested this hypothesis using populations of a marine predator (the brown booby, Sula leucogaster) that forage across...
Eggshell membrane thickness and its contribution to total eggshell thickness for 13 waterbird species
Gary M. Santolo, Sarah H. Peterson, Breanne Cooney, C. Alex Hartman, Mark P. Herzog, Josh T. Ackerman
2024, The Wilson Journal of Ornithology (136) 62-76
Eggshell thickness can be an indicator of environmental pollution in wild birds and shell quality in wild and domestic birds, but it is difficult to measure calcite eggshell thickness due to the presence of the adherent outer eggshell membrane. Eggshells of 13 waterbird species were divided in half...
Wetland creation and reforestation of legacy surface mines in the Central Appalachian Region (USA): A potential climate-adaptation approach for pond-breeding amphibians?
Lauren Sherman, Christopher D. Barton, Jacquelyn C. Guzy, Rebecca N. Davenport, John J. Cox, Jeffery L. Larkin, Todd Fearer, Jillian C. Newman, Steven J. Price
2024, Water (16)
Habitat restoration and creation within human-altered landscapes can buffer the impacts of climate change on wildlife. The Forestry Reclamation Approach (FRA) is a coal surface mine reclamation practice that enhances reforestation through soil decompaction and the planting of native trees. Recently, wetland creation has been coupled with FRA to...
Reproduction of grass carp (Ctenopharyngodon idella) in the Maumee River, Ohio: Part 2—Optimal river conditions for egg and larval drift
Jessica Z. LeRoy, Henry F. Doyle, P. Ryan Jackson, Charles V. Cigrand
2024, Journal of Great Lakes Research (50)
This study uses a one-dimensional steady-state hydraulic model and the Fluvial Egg Drift Simulator (FluEgg) to model the drift and dispersion of grass carp eggs and larvae in the Maumee River, Ohio, for 180 scenarios representing different combinations of 10 river flows, 6 water temperatures, and 3 spawning locations. The...
Craters of habit: Patterns of deformation in the western Galápagos
Eoin Reddin, Susanna K. Ebmeier, Marco Bagnardi, Andrew F. Bell, Pedro Espin Bedon
2024, Volcanica
The western Galápagos islands of Fernandina and Isabela comprise six active volcanoes that have deformed since first observed by satellite radar in the early 1990s. We analyse new (2015–2022) displacement time series at Alcedo, Cerro Azul, Darwin, Fernandina, Sierra Negra, and Wolf volcanoes in the context of...
Calculation of a suspended-sediment concentration-turbidity regression model and flood-ebb suspended-sediment concentration differentials from marshes near Stone Harbor and Thompsons Beach, New Jersey, 2018–19 and 2022–23
Olivia A. De Meo, Robert D. Bales, Neil K. Ganju, Eric D. Marsjanik, Steven E. Suttles
2024, Data Report 1193
The U.S. Geological Survey collected water velocity and water quality data from salt marshes in Great Channel, southwest of Stone Harbor, New Jersey, and near Thompsons Beach, New Jersey, to evaluate restoration effectiveness after Hurricane Sandy and monitor postrestoration marsh health. Time series data of turbidity and water velocity were...
Unique diet and Philonema sp. infections in reservoir-rearing juvenile Chinook Salmon
Marina S. Larson, Anindo Choudhury, Ethan N. Gardner, Peter Konstantinidis, Christina Amy Murphy, Michael L. Kent, James Peterson, Claire E. Couch
2024, Transaction of the American Fisheries Society
ObjectiveDams and reservoirs can alter juvenile growth and survival of migratory salmonids through several physical and biological mechanisms. Juvenile Chinook Salmon Oncorhynchus tshawytscha that are produced upstream of large hydropower dams may have associated passage mortality, but the reservoirs created by these dams can support rapid growth. Characterizing the...
Phylogenomics, male internal genitalia, a new species, and other notes on New World Stenopelmatus Jerusalem crickets (Orthoptera: Stenopelmatoidea: Stenopelmatini)
David B. Weissman, Hojun Song, Amy G. Vandergast
2024, Zootaxa (5443) 237-252
Based on past and expanded DNA sampling, the orthopteran families Stenopelmatidae and Anostostomatidae, as currently structured, are shown to be non-monophyletic. The splay-footed cricket genus Comicus is confirmed to be genetically distinct from all Stenopelmatidae. We add two specimens to our previously published phylogenetic tree for New World Stenopelmatus Jerusalem cricket species and report...
ECCOE Landsat quarterly Calibration and Validation report—Quarter 4, 2023
Md Obaidul Haque, Rajagopalan Rengarajan, Mark Lubke, Nahid Hasan, Ashish Shrestha, Jerad L. Shaw, Alex Denevan, Kathryn Ruslander, Esad Micijevic, Michael J. Choate, Cody Anderson, Kurt Thome, Julia Barsi, Ed Kaita, Raviv Levy, Jeff Miller, Leibo Ding
2024, Open-File Report 2024-1026
Executive SummaryThe U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually...
Heterologous exchanges of glycoprotein and non-virion protein in novirhabdoviruses: Assessment of virlence in yellow perch (Perca flavescens) and rainbow trout (Oncorhynchus mykiss)
Vikram N. Vakharia, Arun Ammayappan, Shamila Yusuff, Tarin M. Tesfaye, Gael Kurath
2024, Viruses (16)
Infectious hematopoietic necrosis virus (IHNV) and viral hemorrhagic septicemia virus (VHSV) are rhabdoviruses in two different species belonging to the Novirhabdovirus genus. IHNV has a narrow host range restricted to trout and salmon species, and viruses in the M genogroup of IHNV have high virulence in rainbow trout (Oncorhynchus mykiss)....