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Hypogene caves of the central Appalachian Shenandoah Valley in Virginia
Daniel H. Doctor, Wil Orndorff
2017, Book chapter, Hypogene karst regions and caves of the world
Several caves in the Shenandoah Valley in Virginia show evidence for early hypogenic conduit development with later-enhanced solution under partly confined phreatic conditions guided by geologic structures. Many (but not all) of these caves have been subsequently invaded by surface waters as a result of erosion and exhumation. Those not...
Pairing field methods to improve inference in wildlife surveys while accommodating detection covariance
John Clare, Shawn T. McKinney, John E. DePue, Cynthia S. Loftin
2017, Ecological Applications (27) 2031-2047
It is common to use multiple field sampling methods when implementing wildlife surveys to compare method efficacy or cost efficiency, integrate distinct pieces of information provided by separate methods, or evaluate method-specific biases and misclassification error. Existing models that combine information from multiple field methods or sampling devices permit rigorous...
Uptake and disposition of select pharmaceuticals by bluegill exposed at constant concentrations in a flow-through aquatic exposure system
Jian-Liang Zhao, Edward T. Furlong, Heiko L. Schoenfuss, Dana W. Kolpin, Kyle L. Bird, David J. Feifarek, Eric A. Schwab, Guang-Guo Ying
2017, Environmental Science & Technology (51) 4434-4444
The increasing use of pharmaceuticals has led to their subsequent input into and release from wastewater treatment plants, with corresponding discharge into surface waters that may subsequently exert adverse effects upon aquatic organisms. Although the distribution of pharmaceuticals in surface water has been extensively studied, the details of uptake, internal...
Spatial and temporal patterns in golden eagle diets in the western United States, with implications for conservation planning
Geoffrey Bedrosian, James W. Watson, Karen Steenhof, Michael N. Kochert, Charles R. Preston, Brian Woodbridge, Gary E. Williams, Kent R. Keller, Ross H. Crandall
2017, Journal of Raptor Research (51) 347-367
Detailed information on diets and predatory ecology of Golden Eagles (Aquila chrysaetos) is essential to prioritize prey species management and to develop landscape-specific conservation strategies, including mitigation of the effects of energy development across the western United States. We compiled published and unpublished data on Golden Eagle diets to (1)...
Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey (Entosphenus tridentatus)
S.L. Whitlock, L.D. Schultz, Carl B. Schreck, J.E. Hess
2017, Canadian Journal of Fisheries and Aquatic Sciences (74) 1646-1653
Redd surveys are a commonly used technique for indexing the abundance of sexually mature fish in streams; however, substantial effort is often required to link redd counts to actual spawner abundance. In this study, we describe how genetic pedigree reconstruction can be used to estimate effective spawner abundance in a...
Future of Pacific salmon in the face of environmental change: Lessons from one of the world's remaining productive salmon regions
Erik R. Schoen, Mark S. Wipfli, Jamie Trammell, Daniel J. Rinella, Angelica L. Floyd, Jess Grunblatt, Molly D. McCarthy, Benjamin E. Meyer, John M. Morton, James E. Powell, Anupma Prakash, Matthew N. Reimer, Svetlana L. Stuefer, Horacio Toniolo, Brett M. Wells, Frank D. W. Witmer
2017, Fisheries (42) 538-553
Pacific salmon Oncorhynchus spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but...
Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels
Ann Marie Reinhold, Robert G. Bramblett, Alexander V. Zale, Geoffrey C. Poole, David W. Roberts
2017, Transactions of the American Fisheries Society (146) 967-982
The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of...
Diet composition, quality and overlap of sympatric American pronghorn and gemsbok
James W. Cain III, Mindi M. Avery, Colleen A. Caldwell, Laurie B. Abbott, Jerry L. Holechek
2017, Wildlife Biology (2017) 1-10
Species with a long evolutionary history of sympatry often have mechanisms for resource partitioning that reduce competition. However, introduced non-native ungulates often compete with native ungulates and competitive effects can be exacerbated in arid regions due to low primary productivity. Our objectives were to characterize diet composition, quality, and overlap...
Regime shifts and panarchies in regional scale social-ecological water systems
Lance Gunderson, Barbara Cosens, Brian C. Chaffin, Craig Anthony Arnold, Alexander K. Fremier, Ahjond S. Garmestani, Robin Kundis Craig, Hannah Gosnell, Hannah E. Birge, Craig R. Allen, Melinda H. Benson, Ryan R. Morrison, Mark Stone, Joseph A. Hamm, Kristine T. Nemec, Edella Schlager, Dagmar Llewellyn
2017, Ecology and Society (22) 1-12
In this article we summarize histories of nonlinear, complex interactions among societal, legal, and ecosystem dynamics in six North American water basins, as they respond to changing climate. These case studies were chosen to explore the conditions for emergence of adaptive governance in heavily regulated and developed social-ecological systems...
Is the impact of eutrophication on phytoplankton diversity dependent on lake volume/ecosystem size?
Didier L. Baho, Stina Drakare, Richard K. Johnson, Craig R. Allen, David G. Angeler
2017, Journal of Limnology (76) 199-210
Research focusing on biodiversity responses to the interactions of ecosystem size and anthropogenic stressors are based mainly on correlative gradient studies, and may therefore confound size-stress relationships due to spatial context and differences in local habitat features across ecosystems. We investigated how local factors related to anthropogenic stressors (e.g.,eutrophication) interact...
Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway
Andrew M. Ramey, Nichola J. Hill, Troy Cline, Magdalena Plancarte, Susan De La Cruz, Michael L. Casazza, Joshua T. Ackerman, Joseph P. Fleskes, T. Winston Vickers, Andrew B. Reeves, Frances Gulland, Christine Fontaine, Diann J. Prosser, Jonathan Runstadler, Walter M. Boyce
2017, Emerging Microbes & Infections (6) 1-10
We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014–2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP)...
Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae
Olin Feuerbacher, Scott A. Bonar, Paul J. Barrett
2017, North American Journal of Aquaculture (79) 106-114
We evaluated the effectiveness of four antibiotics in enhancing the hatch rate, larval survival, and adult survival of hybrid Devils Hole Pupfish Cyprinodon diabolis (hybridized with Ash Meadows Amargosa Pupfish C. nevadensis mionectes). Cephalexin (CEX; concentration = 6.6 mg/L of water), chloramphenicol (CAM; 50 mg/L), erythromycin (ERY; 12.5 mg/L), and trimethoprim sulfamethoxazole (TMP-SMX;...
Prey partitioning and use of insects by juvenile sockeye salmon and a potential competitor, threespine stickleback, in Afognak Lake, Alaska
Natura Richardson, Anne H. Beaudreau, Mark S. Wipfli, Heather Finkle
2017, Ecology of Freshwater Fish (26) 586-601
Freshwater growth of juvenile sockeye salmon (Oncorhynchus nerka) depends upon the quality and quantity of prey and interactions with potential competitors in the foraging environment. To a large extent, knowledge about the ecology of lake-rearing juvenile sockeye salmon has emerged from studies of commercially important runs returning to deep nursery...
A fault‐based model for crustal deformation in the western United States based on a combined inversion of GPS and geologic inputs
Yuehua Zeng, Zheng-Kang Shen
2017, Bulletin of the Seismological Society of America (107) 2597-2612
We develop a crustal deformation model to determine fault‐slip rates for the western United States (WUS) using the Zeng and Shen (2014) method that is based on a combined inversion of Global Positioning System (GPS) velocities and geological slip‐rate constraints. The model consists of six blocks with...
Shifts in an invasive rodent community favoring black rats (Rattus rattus) following restoration of native forest
Aaron B. Shiels, Arthur C. Medeiros, Erica I. von Allmen
2017, Restoration Ecology (25) 759-767
One potential, unintended ecological consequence accompanying forest restoration is a shift in invasive animal populations, potentially impacting conservation targets. Eighteen years after initial restoration (ungulate exclusion, invasive plant control, and out planting native species) at a 4 ha site on Maui, Hawai'i, we compared invasive rodent communities in a restored native...
New insight into the origin of manganese oxide ore deposits in the Appalachian Valley and Ridge of northeastern Tennessee and northern Virginia, USA
Sarah K. Carmichael, Daniel H. Doctor, Crystal G. Wilson, Joshua Feierstein, Ryan J. McAleer
2017, GSA Bulletin (129) 1158-1180
Manganese oxide deposits have long been observed in association with carbonates within the Appalachian Mountains, but their origin has remained enigmatic for well over a century. Ore deposits of Mn oxides from several productive sites located in eastern Tennessee and northern Virginia display morphologies that include botryoidal and branching forms,...
Climate impacts on agricultural land use in the USA: the role of socio-economic scenarios
Jianhong E. Mu, Benjamin M. Sleeter, John T. Abatzoglou, John M. Antle
2017, Climatic Change (144) 329-345
We examine the impacts of climate on net returns from crop and livestock production and the resulting impact on land-use change across the contiguous USA. We first estimate an econometric model to project effects of weather fluctuations on crop and livestock net returns and then use a semi-reduced form land-use...
Challenges and solutions for applying the travel cost demand model to geographically remote visitor destinations: A case study of bear viewing at Katmai National Park and Preserve
Leslie Richardson, Christopher Huber, John B. Loomis
2017, Human Dimensions of Wildlife (22) 550-563
Remote and unique destinations present difficulties when attempting to construct traditional travel cost models to value recreation demand. The biggest limitation comes from the lack of variation in the dependent variable, defined as the number of trips taken over a set time frame. There are various approaches that can be...
Isotopic characterization of late Neogene travertine deposits at Barrancas Blancas in the eastern Atacama Desert, Chile
J. Quade, E.T. Rasbury, K.W. Huntington, Adam M. Hudson, H. Vonhof, K. Anchukaitis, Julio L. Betancourt, C. Latorre, M. Pepper
2017, Chemical Geology (466) 41-56
Here we explore the potential of spring-related, surface and subsurface carbonates as an archive of paleoenvironmental change at Barrancas Blancas, located in the broadest and driest sector of the Atacama Desert at 24.5°S. From these deposits we present a new stable isotopic record of paleoenvironmental conditions over portions of the...
A method for quantifying cloud immersion in a tropical mountain forest using time-lapse photography
Maoya Bassiouni, Martha A. Scholl, Angel J. Torres-Sanchez, Sheila F. Murphy
2017, Agricultural and Forest Meteorology (243) 100-112
Quantifying the frequency, duration, and elevation range of fog or cloud immersion is essential to estimate cloud water deposition in water budgets and to understand the ecohydrology of cloud forests. The goal of this study was to develop a low-cost and high spatial-coverage method to detect occurrence of cloud immersion...
Compositional signatures in acoustic backscatter over vegetated and unvegetated mixed sand-gravel riverbeds
Daniel D. Buscombe, Paul E. Grams, Matthew A. Kaplinski
2017, Journal of Geophysical Research F: Earth Surface (122) 1771-1793
Multibeam acoustic backscatter has considerable utility for remote characterization of spatially heterogeneous bed sediment composition over vegetated and unvegetated riverbeds of mixed sand and gravel. However, the use of high-frequency, decimeter-resolution acoustic backscatter for sediment classification in shallow water is hampered by significant topographic contamination of the signal. In mixed...
Restricted gene flow between resident Oncorhynchus mykiss and an admixed population of anadromous steelhead
Andrew P. Matala, Brady Allen, Shawn R. Narum, Elaine Harvey
2017, Ecology and Evolution (7) 8349-8362
The species Oncorhynchus mykiss is characterized by a complex life history that presents a significant challenge for population monitoring and conservation management. Many factors contribute to genetic variation in O. mykiss populations, including sympatry among migratory phenotypes, habitat heterogeneity, hatchery introgression, and immigration (stray) rates. The relative influences of these and other factors are contingent...
Influence of precipitation and crop germination on resource selection by mule deer (Odocoileus hemionus) in southwest Colorado
Emily M. Carrollo, Heather E. Johnson, Justin W. Fischer, Matthew Hammond, Patricia D. Dorsey, Charles Anderson, Kurt C. Vercauteren, W. David Walter
2017, Scientific Reports (7) 1-9
Mule deer (Odocoileus hemionus) populations in the western United States provide many benefits to local economies but can also cause considerable damage to agriculture, particularly damage to lucrative crops. Limited information exists to understand resource selection of mule deer in response to annual variation in crop rotation and climatic conditions....
Food-web dynamics and isotopic niches in deep-sea communities residing in a submarine canyon and on the adjacent open slopes
Amanda W.J. Demopoulos, Jennifer McClain-Counts, Steve W. Ross, Sandra Brooke, Furu Mienis
2017, Marine Ecology Progress Series (578) 19-33
Examination of food webs and trophic niches provide insights into organisms' functional ecology, yet few studies have examined trophodynamics within submarine canyons, where the interaction of canyon morphology and oceanography influences habitat provision and food deposition. Using stable isotope analysis and Bayesian ellipses, we documented deep-sea food-web structure and trophic...
Methane in aquifers used for public supply in the United States
Peter B. McMahon, Kenneth Belitz, Jeannie R. B. Barlow, Bryant C. Jurgens
2017, Applied Geochemistry (84) 337-347
In 2013 to 2015, 833 public supply wells in 15 Principal aquifers in the U.S. were sampled to identify which aquifers contained high methane concentrations (>1 mg/L) and determine the geologic, hydrologic, and geochemical conditions associated with high concentrations. This study represents the first national assessment of methane in aquifers used...