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Publication Extents

Not all publications have extents, not all extents are completely accurate
Predictive habitat models derived from nest-box occupancy for the endangered Carolina northern flying squirrel in the southern Appalachians
W. Mark Ford, A.M. Evans, Richard H. Odom, Jane L. Rodrigue, C.A. Kelly, Nicole Abaid, Corinne A. Diggins, Doug Newcomb
2016, Endangered Species Research (27) 131-140
In the southern Appalachians, artificial nest-boxes are used to survey for the endangered Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus), a disjunct subspecies associated with high elevation (>1385 m) forests. Using environmental parameters diagnostic of squirrel habitat, we created 35 a priori occupancy models in the program PRESENCE for boxes surveyed in...
Dominance of 'Gallionella capsiferriformans' and heavy metal association with Gallionella-like stalks in metal-rich pH 6 mine water discharge
Maria Fabisch, Gina Freyer, Carol A. Johnson, Georg Buchel, Denise M. Akob, Thomas R. Neu, Kirsten Kusel
2016, Geobiology (14) 68-90
Heavy metal-contaminated, pH 6 mine water discharge created new streams and iron-rich terraces at a creek bank in a former uranium-mining area near Ronneburg, Germany. The transition from microoxic groundwater with ~5 mm Fe(II) to oxic surface water may provide a suitable habitat for microaerobic iron-oxidizing bacteria (FeOB). In this study,...
A comparison of helicopter-borne electromagnetic systems for hydrogeologic studies
Paul A. Bedrosian, Cyril Schamper, Esben Auken
2016, Geophysical Prospecting (64) 192-215
The increased application of airborne electromagnetic surveys to hydrogeological studies is driving a demand for data that can consistently be inverted for accurate subsurface resistivity structure from the near surface to depths of several hundred metres. We present an evaluation of three commercial airborne electromagnetic systems over two test blocks...
Comparative mitogenomic analyses of three North American stygobiont amphipods of the genus Stygobromus (Crustacea: Amphipoda)
Aaron W. Aunins, David L. Nelms, Christopher S. Hobson, Tim L. King
2016, Mitochondrial DNA Part B (1) 560-563
The mitochondrial genomes of three North American stygobiont amphipods Stygobromus tenuis potomacus, S. foliatus and S. indentatus collected from Caroline County, VA, were sequenced using a shotgun sequencing approach on an Illumina NextSeq500 (Illumina Inc., San Diego, CA). All three mitogenomes displayed 13 protein-coding genes, 22 tRNAs and two rRNAs typical of metazoans. While S. tenuis and S....
Cattle grazing in wetlands
Beth A. Middleton
C. Max Finlayson, Mark Everard, Kenneth Irvine, Robert J. McInnes, Beth A. Middleton, Anne A. Van Dam, Nick C. Davidson, editor(s)
2016, Book chapter, The Wetland Book
Cattle grazing drives successional change in wetland vegetation by removing tall grasses and other vegetation. As a disturbance, cattle grazing in some ways resembles natural disturbances such as native mammal grazing and lightning-strike fire, which can support higher biodiversity in wetlands. To encourage rare and Red-Listed species, natural land managers...
Rare earth element deposits in China
Yu-Ling Xie, Zeng-qian Hou, Richard J. Goldfarb, Xiang Guo, Lei Wang
2016, Book chapter, Reviews in Economic Geology
China is the world’s leading rare earth element (REE) producer and hosts a variety of deposit types. Carbonatite- related REE deposits, the most significant deposit type, include two giant deposits presently being mined in China, Bayan Obo and Maoniuping, the first and third largest deposits of this type in the...
Early Mesozoic geology in Virginia
Joseph P. Smoot
Christopher M. Bailey, W. Cullen Sherwood, L. Scott Eaton, David S. Powars, editor(s)
2016, Book chapter, The geology of Virginia (Virginia Museum of Natural History Special Publication 18)
No abstract available....
Status of pelagic prey fishes in Lake Michigan, 2015
David M. Warner, Randall M. Claramunt, Steven A. Farha, Dale Hanson, Timothy J. Desorcie, Timothy P. O’Brien
2016, Report, Compiled reports to the Great Lake Fishery Commission of the annual bottom trawl and acoustics surveys, 2015
Acoustic surveys were conducted in late summer/early fall during the years 1992-1996 and 2001-2015 to estimate pelagic prey fish biomass in Lake Michigan. Midwater trawling during the surveys as well as target strength provided a measure of species and size composition of the fish community for use in scaling acoustic...
Brackish marsh zones as a waterfowl habitat resource in submerged aquatic vegetation beds in the northern Gulf of Mexico
Kristin DeMarco, Eva R. Hillmann, Michael G. Brasher, Megan K. LaPeyre
2016, Journal of the Southeastern Association of Fish and Wildlife Agencies (3) 261-269
Submerged aquatic vegetation (SAV) beds are shallow coastal habitats that are increasingly exposed to the effects of sea-level rise (SLR). In the northern Gulf of Mexico (nGoM), an area especially vulnerable to SLR, the abundance and distribution of SAV food resources (seeds, rhizomes, and tissue) can influence the carrying...
Effects of a growth check on daily age estimates of age-0 alligator gar
Richard A. Snow, James M. Long
2016, Journal of the Southeastern Association of Fish and Wildlife Agencies (3) 6-10
Accurate age and growth information is essential for a complete knowledge of life history, growth rates, age at sexual maturity, and average life span in fishes. Alligator gar are becoming increasingly managed throughout their range and because this species spawns in backwater flooded areas, their offspring are prone to stranding...
Status and trends in the Lake Superior fish community, 2015
Mark R. Vinson, Lori M. Evrard, Owen T. Gorman, Daniel L. Yule
2016, Report, Compiled reports to the Great Lakes Fishery Commission of the annual bottom trawl and acoustics surveys, 2015
In 2015, the Lake Superior fish community was sampled with daytime bottom trawls at 76 nearshore and 33 offshore stations. Spring and summer water temperatures in 2015 were colder than average, but warmer than that observed in 2014. In the nearshore zone, a total of 11,882 individuals from 22 species...
Modeling abundance using multinomial N-mixture models
J. Andrew Royle
2016, Book chapter
Multinomial N-mixture models are a generalization of the binomial N-mixture models described in Chapter 6 to allow for more complex and informative sampling protocols beyond simple counts. Many commonly used protocols such as multiple observer sampling, removal sampling, and capture-recapture produce a multivariate count frequency that has a multinomial distribution...
Advanced hierarchical distance sampling
J. Andrew Royle
2016, Book chapter
In this chapter, we cover a number of important extensions of the basic hierarchical distance-sampling (HDS) framework from Chapter 8. First, we discuss the inclusion of “individual covariates,” such as group size, in the HDS model. This is important in many surveys where animals form natural groups that are the...
Evaluation of the initial thematic output from a continuous change-detection algorithm for use in automated operational land-change mapping by the U.S. Geological Survey
Bruce Pengra, Alisa L. Gallant, Zhe Zhu, Devendra Dahal
2016, Remote Sensing (8) 1-33
The U.S. Geological Survey (USGS) has begun the development of operational, 30-m resolution annual thematic land cover data to meet the needs of a variety of land cover data users. The Continuous Change Detection and Classification (CCDC) algorithm is being evaluated as the likely methodology following early trials. Data for...
Exotic annual Bromus invasions: Comparisons among species and ecoregions in the western United States
Matthew L. Brooks, Cynthia S. Brown, Jeanne C. Chambers, Carla M. D'Antonio, Jon E. Keeley, Jayne Belnap
2016, Book chapter, Exotic brome-grasses in arid and semiarid ecosystems of the western US
Exotic annual Bromus species are widely recognized for their potential to invade, dominate, and alter the structure and function of ecosystems. In this chapter, we summarize the invasion potential, ecosystem threats, and management strategies for different Bromus species within each of five ecoregions of the western United States. We characterize...
Managed island ecosystems
Kathryn McEachern, Tanya Atwater, Paul W. Collins, Kate R. Faulkner, Daniel V. Richards
2016, Book chapter, Ecosystems of California
This long-anticipated reference and sourcebook for California’s remarkable ecological abundance provides an integrated assessment of each major ecosystem type—its distribution, structure, function, and management. A comprehensive synthesis of our knowledge about this biologically diverse state, Ecosystems of California covers the state from oceans to mountaintops using multiple lenses: past and...
Fishes of the Mississippi River
Harold Schramm, Jay T. Hatch, Robert A. Hrabik, William T. Slack
2016, Book chapter, Fishery resources, environment, and conservation in the Mississippi and Yangtze (Changjiang) River Basins
No abstract available....
Circumpolar Biodiversity Monitoring Programme coastal biodiversity monitoring background paper
Donald McLennan, Rebecca Anderson, S. Wegeberg, Maria Pettersvik Arvnes, Liudmila Sergienko, Carolina Behe, Pitseolak Moss-Davies, S. Fritz, Carl J. Markon, T. Christensen, T. Barry, C. Price
2016, Report
In 2014, the United States (U.S.) and Canada agreed to act as co-lead countries for the initial development of the Coastal Expert Monitoring Group (CEMG) as part of the Circumpolar Biodiversity Monitoring Program (CBMP, www. cbmp.is) under the Arctic Council’s Conservation of Arctic Flora and Fauna (CAFF, www.caff.is) working group....
Potentially induced earthquakes during the early twentieth century in the Los Angeles Basin
Susan E. Hough, Morgan T. Page
2016, Bulletin of the Seismological Society of America (106) 2419-2435
Recent studies have presented evidence that early to mid‐twentieth‐century earthquakes in Oklahoma and Texas were likely induced by fossil fuel production and/or injection of wastewater (Hough and Page, 2015; Frohlich et al., 2016). Considering seismicity from 1935 onward, Hauksson et al. (2015) concluded that there is no evidence for significant induced activity...
The concept of stress in fish
Carl B. Schreck, Lluis Tort
2016, Fish Physiology (35) 1-34
The general physiological response of fish to threatening situations, as with all vertebrates, is referred to as stress. A stress response is initiated almost immediately following the perception of a stressor. Mildly stressful situations can have beneficial or positive effects (eustress), while higher severities induce <a...
Influence of Didymosphenia geminata blooms on prey composition and associated diet and growth of Brown Trout
Daniel A. James, Steven R. Chipps
2016, Transactions of the American Fisheries Society (145) 195-205
We compared diet, stomach fullness, condition, and growth of Brown Trout Salmo trutta among streams with or without blooms of the benthic diatom Didymosphenia geminata in the Black Hills, South Dakota. In Rapid Creek, where D. geminata blooms covered ∼30% of the stream bottom, Brown Trout consumed fewer ephemeropterans (6–8%...
Physiological basis of climate change impacts on North American inland fishes
James E. Whitney, Robert K. Al-Chokhachy, David B. Bunnell, Colleen A. Caldwell, Steven J. Cooke, Erika J. Eliason, Mark W. Rogers, Abigail J. Lynch, Craig P. Paukert
2016, Fisheries (41) 332-345
Global climate change is altering freshwater ecosystems and affecting fish populations and communities. Underpinning changes in fish distribution and assemblage-level responses to climate change are individual-level physiological constraints. In this review, we synthesize the mechanistic effects of climate change on neuroendocrine, cardiorespiratory, immune, osmoregulatory, and reproductive systems of freshwater and...
Resilience
Craig R. Allen, Ahjond S. Garmestani, David G. Angeler
2016, Book chapter, Oxford Bibliographies in Environmental Science
No abstract available....
Loamy, two-storied soils on the outwash plains of southwestern lower Michigan: Pedoturbation of loess with the underlying sand
Michael D. Luehmann, Brad G. Peter, Christopher B. Connallon, Randall J. Schaetzl, Samuel J. Smidt, Wei Liu, Kevin A. Kincare, Toni A. Walkowiak, Elin Thorlund, Marie S. Holler
2016, Annals of the American Association of Geographers (106) 551-572
Soils on many of the outwash plains in southwestern Michigan have loamy upper profiles, despite being underlain by sand-textured outwash. The origin of this upper, loamy material has long been unknown. The purpose of this study is to analyze the spatio-textural characteristics of these loamy-textured sediments to ascertain their origin(s)....
Trophic overlap between native and invasive stream crayfish
Daniel D. Magoulick, Glenn L. Piercey
2016, Hydrobiologia (766) 237-246
We examined trophic dynamics of a stream food web where invasive Orconectes neglectus appear to be displacing native O. eupunctus in the Spring River drainage of the Ozark Highlands, Missouri and Arkansas, USA. We collected crayfish species and possible food sources seasonally from a site of sympatry on the South Fork Spring River. We...