Analysis of 1997–2008 groundwater level changes in the upper Deschutes Basin, Central Oregon
Marshall W. Gannett, Kenneth E. Lite Jr.
2013, Scientific Investigations Report 2013-5092
Groundwater-level monitoring in the upper Deschutes Basin of central Oregon from 1997 to 2008 shows water-level declines in some places that are larger than might be expected from climate variations alone, raising questions regarding the influence of groundwater pumping, canal lining (which decreases recharge), and other human influences. Between the...
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
Paul A. Hohenlohe, Mitch D. Day, Stephen J. Amish, Michael R. Miller, Nick Kamps-Hughes, Matthew C. Boyer, Clint C. Muhlfeld, Fred W. Allendorf, Eric A. Johnson, Gordon Luikart
2013, Molecular Ecology (22) 3002-3013
Rapid and inexpensive methods for genomewide single nucleotide polymorphism (SNP) discovery and genotyping are urgently needed for population management and conservation. In hybridized populations, genomic techniques that can identify and genotype thousands of species-diagnostic markers would allow precise estimates of population- and individual-level admixture as well as identification of 'super...
Geochronologic evidence for a possible MIS-11 emergent barrier/beach-ridge in southeastern Georgia, USA
H. W. Markewich, M.J. Pavich, A. P. Schultz, S. A. Mahan, W. B. Aleman-Gonzalez, P.R. Bierman
2013, Quaternary Science Reviews (60) 49-75
Predominantly clastic, off-lapping, transgressive, near-shore marine sediment packages that are morphologically expressed as subparallel NE-trending barriers, beach ridges, and associated back-barrier areas, characterize the near-surface stratigraphic section between the Savannah and the Ogeechee Rivers in Effingham County, southeastern Georgia. Each barrier/back-barrier (shoreline) complex is lower than and cut into a...
Gaussian process regression for sensor networks under localization uncertainty
M. Jadaliha, Yunfei Xu, Jongeun Choi, N.S. Johnson, Weiming Li
2013, IEEE Transactions on Signal Processing (61) 223-237
In this paper, we formulate Gaussian process regression with observations under the localization uncertainty due to the resource-constrained sensor networks. In our formulation, effects of observations, measurement noise, localization uncertainty, and prior distributions are all correctly incorporated in the posterior predictive statistics. The analytically intractable posterior predictive statistics are proposed...
A conceptual hydrogeologic model for the hydrogeologic framework, geochemistry, and groundwater-flow system of the Edwards-Trinity and related aquifers in the Pecos County region, Texas
Jonathan V. Thomas, Gregory P. Stanton, Johnathan R. Bumgarner, Daniel K. Pearson, Andrew Teeple, Natalie A. Houston, Jason Payne, MaryLynn Musgrove
2013, Fact Sheet 2013-3024
The Edwards-Trinity aquifer is a vital groundwater resource for agricultural, industrial, and municipal uses in the Trans-Pecos region of west Texas. A conceptual model of the hydrogeologic framework, geochemistry, and groundwater-flow system in the 4,700 square-mile study area was developed by the U.S. Geological Survey (USGS) in cooperation with the...
Organic waste compounds in streams: Occurrence and aquatic toxicity in different stream compartments, flow regimes, and land uses in southeast Wisconsin, 2006–9
Austin K. Baldwin, Steven R. Corsi, Kevin D. Richards, Steven W. Geis, Christopher Magruder
2013, Scientific Investigations Report 2013-5104
An assessment of organic chemicals and aquatic toxicity in streams located near Milwaukee, Wisconsin, indicated high potential for adverse impacts on aquatic organisms that could be related to organic waste compounds (OWCs). OWCs used in agriculture, industry, and households make their way into surface waters through runoff, leaking septic-conveyance systems,...
The use of process models to inform and improve statistical models of nitrate occurrence, Great Miami River Basin, southwestern Ohio
Donald A. Walter, J. Jeffrey Starn
2013, Scientific Investigations Report 2012-5001
Statistical models of nitrate occurrence in the glacial aquifer system of the northern United States, developed by the U.S. Geological Survey, use observed relations between nitrate concentrations and sets of explanatory variables—representing well-construction, environmental, and source characteristics— to predict the probability that nitrate, as nitrogen, will exceed a threshold concentration....
Fine-grained sediment dispersal along the California coast
Jonathan A. Warrick, Curt D. Storlazzi
2013, Fact Sheet 2013-3023
Fine-grained sediment (silt and clay) enters coastal waters from rivers, eroding coastal bluffs, resuspension of seabed sediment, and human activities such as dredging and beach nourishment. The amount of sediment in coastal waters is an important factor in ocean ecosystem health, but little information exists on both the natural and...
Alaska Geochemical Database, Version 2.0 (AGDB2)--including “best value” data compilations for rock, sediment, soil, mineral, and concentrate sample media
Matthew Granitto, Jeanine M. Schmidt, Nora B. Shew, Bruce M. Gamble, Keith A. Labay
2013, Data Series 759
The Alaska Geochemical Database Version 2.0 (AGDB2) contains new geochemical data compilations in which each geologic material sample has one “best value” determination for each analyzed species, greatly improving speed and efficiency of use. Like the Alaska Geochemical Database (AGDB, http://pubs.usgs.gov/ds/637/) before it, the AGDB2 was created and designed to...
Automated mapping of mineral groups and green vegetation from Landsat Thematic Mapper imagery with an example from the San Juan Mountains, Colorado
Barnaby W. Rockwell
2013, Scientific Investigations Map 3252
Multispectral satellite data acquired by the ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) and Landsat 7 Enhanced Thematic Mapper Plus (TM) sensors are being used to populate an online Geographic Information System (GIS) of the spatial occurrence of mineral groups and green vegetation across the western conterminous United States...
Marsh wrens as bioindicators of mercury in wetlands of Great Salt Lake: do blood and feathers reflect site-specific exposure risk to bird reproduction?
C. Alex Hartman, Joshua T. Ackerman, Garth Herring, John Isanhart, Mark P. Herzog
2013, Environmental Science & Technology (47) 6597-6605
Nonlethal sampling of bird blood and feathers are among the more common ways of estimating the risk of mercury exposure to songbird reproduction. The implicit assumption is that mercury concentrations in blood or feathers of individuals captured in a given area are correlated with mercury concentrations in eggs from the...
Final report for sea-level rise response modeling for San Francisco Bay estuary tidal marshes
John Y. Takekawa, Karen M. Thorne, Kevin J. Buffington, Kyle A. Spragens, Kathleen M. Swanson, Judith Z. Drexler, David H. Schoellhamer, Cory T. Overton, Michael L. Casazza
2013, Open-File Report 2013-1081
The International Panel on Climate Change has identified coastal ecosystems as areas that will be disproportionally affected by climate change. Current sea-level rise projections range widely with 0.57 to 1.9 meters increase in mea sea level by 2100. The expected accelerated rate of sea-level rise through the 21st century will...
Evidence for extensive methane venting on the southeastern U.S. Atlantic margin
L.L. Brothers, C.L. Van Dover, C.R. German, C.L. Kaiser, D.R. Yoerger, C.D. Ruppel, E. Lobecker, A.D. Skarke, J.K.S. Wagner
2013, Geology (41) 807-810
We present the first evidence for widespread seabed methane venting along the southeastern United States Atlantic margin beyond the well-known Blake Ridge diapir seep. Recent ship- and autonomous underwater vehicle (AUV)–collected data resolve multiple water-column anomalies (>1000 m height) and extensive new chemosynthetic seep communities at the Blake Ridge and...
Solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery mine, near Edgemont, South Dakota
Raymond H. Johnson, Sharon F. Diehl, William Benzel
2013, Open-File Report 2013-1093
This report releases solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery site near Edgemont, South Dakota. These cores were collected by Powertech Uranium Corporation, and material not used for their analyses were given to the U.S. Geological Survey for additional sampling and analyses. These additional analyses...
Frequent cross-species transmission of parvoviruses among diverse carnivore hosts
Andrew B. Allison, Dennis J. Kohler, Karen A. Fox, Justin D. Brown, Richard W. Gerhold, Valerie I. Shearn-Bochsler, Edward J. Dubovi, Colin R. Parrish, Edward C. Holmes
2013, Journal of Virology (87) 2342-2347
Although parvoviruses are commonly described in domestic carnivores, little is known about their biodiversity in nondomestic species. A phylogenetic analysis of VP2 gene sequences from puma, coyote, gray wolf, bobcat, raccoon, and striped skunk revealed two major groups related to either feline panleukopenia virus (“FPV-like”) or canine parvovirus (“CPV-like”). Cross-species...
Tracking animals in freshwater with electronic tags: past, present and future
Steven J. Cooke, Jonathan D. Midwood, Jason D. Thiem, Peter Klimley, Martyn C. Lucas, Eva B. Thorstad, John Eiler, Chris Holbrook, Brendan C. Ebner
2013, Animal Biotelemetry (1)
Considerable technical developments over the past half century have enabled widespread application of electronic tags to the study of animals in the wild, including in freshwater environments. We review the constraints associated with freshwater telemetry and biologging and the technical developments relevant to their use. Technical constraints for tracking animals...
Implications of flume slope on discharge estimates from 0.762-meter H flumes used in edge-of-field monitoring
Matthew J. Komiskey, Todd D. Stuntebeck, Amanda L. Cox, Dennis R. Frame
2013, Open-File Report 2013-1082
The effects of longitudinal slope on the estimation of discharge in a 0.762-meter (m) (depth at flume entrance) H flume were tested under controlled conditions with slopes from −8 to +8 percent and discharges from 1.2 to 323 liters per second. Compared to the stage-discharge rating for a longitudinal flume...
Geomorphic process fingerprints in submarine canyons
Daniel S. Brothers, Uri S. ten Brink, Brian D. Andrews, Jason D. Chaytor, David C. Twichell
2013, Marine Geology (337) 53-66
Submarine canyons are common features of continental margins worldwide. They are conduits that funnel vast quantities of sediment from the continents to the deep sea. Though it is known that submarine canyons form primarily from erosion induced by submarine sediment flows, we currently lack quantitative, empirically based expressions that describe...
Postwildfire debris-flow hazard assessment of the area burned by the 2012 Little Bear Fire, south-central New Mexico
Anne C. Tillery, Anne Marie Matherne
2013, Open-File Report 2013-1108
A preliminary hazard assessment was developed of the debris-flow potential from 56 drainage basins burned by the Little Bear Fire in south-central New Mexico in June 2012. The Little Bear Fire burned approximately 179 square kilometers (km2) (44,330 acres), including about 143 km2 (35,300 acres) of National Forest System lands...
Geomorphic characterization of the U.S. Atlantic continental margin
Daniel S. Brothers, Uri S. ten Brink, Brian D. Andrews, Jason D. Chaytor
2013, Marine Geology (338) 46-63
The increasing volume of multibeam bathymetry data collected along continental margins is providing new opportunities to study the feedbacks between sedimentary and oceanographic processes and seafloor morphology. Attempts to develop simple guidelines that describe the relationships between form and process often overlook the importance of inherited physiography in slope depositional...
Holocene faulting in the Bellingham forearc basin: Upper-plate deformation at the northern end of the Cascadia subduction zone
Harvey M. Kelsey, Brian L. Sherrod, Richard J. Blakely, Ralph A. Haugerud
2013, Journal of Geophysical Research B: Solid Earth (117)
The northern Cascadia forearc takes up most of the strain transmitted northward via the Oregon Coast block from the northward-migrating Sierra Nevada block. The north-south contractional strain in the forearc manifests in upper-plate faults active during the Holocene, the northern-most components of which are faults within the Bellingham Basin. The...
Regional bankfull-channel dimensions of non-urban wadeable streams in Indiana
Bret A. Robinson
2013, Scientific Investigations Report 2013-5078
During floods, damage to properties and community infrastructure may result from inundation and the processes of erosion. The damages imparted by erosion are collectively termed the fluvial erosion hazard (FEH), and the Indiana Silver Jackets Multi-agency Hazard Mitigation Taskforce is supporting a program to build tools that will assist Indiana...
Survey of bats on Columbia National Wildlife Refuge, Washington, December 2011-April 2012
Joan C. Hagar, Tom Manning, Jenny Barnett
2013, Open-File Report 2013-1120
Bats are diverse and abundant in many ecosystems worldwide. They perform important ecosystem functions, particularly by consuming large quantities of insects (Cleveland and others, 2006; Jones and others, 2009; Kuhn and others, 2011). The importance of bats to biodiversity and to ecosystem integrity has been overlooked in many regions, largely...
Peak streamflows and runoff volumes for the Central United States, February through September, 2011
Robert R. Holmes Jr., Gregg J. Wiche, Todd A. Koenig, Steven K. Sando
2013, Professional Paper 1798-C
During 2011, excessive precipitation resulted in widespread flooding in the Central United States with 33 fatalities and approximately $4.2 billion in damages reported in the Souris/Red River of the North (Souris/Red) and Mississippi River Basins. At different times, beginning in late February 2011 and extending through September 2011, various rivers...
Improved estimates of filtered total mercury loadings and total mercury concentrations of solids from potential sources to Sinclair Inlet, Kitsap County, Washington
Anthony J. Paulson, Kathleen E. Conn, John F. DeWild
2013, Scientific Investigations Report 2013-5081
Previous investigations examined sources and sinks of mercury to Sinclair Inlet based on historic and new data. This included an evaluation of mercury concentrations from various sources and mercury loadings from industrial discharges and groundwater flowing from the Bremerton naval complex to Sinclair Inlet. This report provides new data from...