Thiamine deficiency: a viable hypothesis for paralytic syndrome in Baltic birds. Commentary on Sonne et al., 2012. A review of the factors causing paralysis in wild birds: implications for the paralytic syndrome observed in the Baltic Sea. Science of the Total Environment 416:32-39
Donald E. Tillitt, Clifford E. Kraft, Dale C. Honeyfield, John D. Fitzsimons
2012, Science of the Total Environment (433) 561-562
In a recent assessment of hypotheses presented by Balk et al. (2009) regarding the etiology of a paralytic disease inflicting bird populations in Northern Europe, Sonne et al. (2012) “call for a major coordinated effort on research…” to “… integrate clinical, physiological, ecological and demographic investigations at all levels to...
Antioxidant effects of selenium on lung injury in paraquat intoxicated rats
K.S. Kim, G.J. Suh, W.Y. Kwon, Y.H. Kwak, Kenneth Lee, H.J. Lee, K.Y. Jeong, Myung W. Lee
2012, Clinical Toxicology (50) 749-753
CONTEXT: Paraquat (PQ) causes lethal intoxication by inducing oxidant injury to the lung. Selenium is a cofactor for glutathione peroxidase (GPx), which is one of the major endogenous antioxidant enzymes. OBJECTIVE: To determine whether selenium post-treatment activates GPx, decreases lung injury, and improves survival in PQ intoxicated rats. MATERIALS AND METHODS: Male...
Effects of flow dynamics on the aquatic-terrestrial transition zone (ATTZ) of lower Missouri river sandbars with implications for selected biota
Emily Tracy-Smith, David L. Galat, Robert B. Jacobson
2012, River Research and Applications (28) 793-813
Sandbars are an important aquatic terrestrial transition zone (ATTZ) in the active channel of rivers that provide a variety of habitat conditions for riverine biota. Channelization and flow regulation in many large rivers have diminished sandbar habitats and their rehabilitation is a priority. We developed sandbar-specific models of discharge-area relationships...
Ontogenetic and among-individual variation in foraging strategies of northeast Pacific white sharks based on stable isotope analysis
S.L. Kim, M. Tim Tinker, J. A. Estes, P.L. Koch
2012, PLoS ONE (7) 1-11
There is growing evidence for individuality in dietary preferences and foraging behaviors within populations of various species. This is especially important for apex predators, since they can potentially have wide dietary niches and a large impact on trophic dynamics within ecosystems. We evaluate the diet of an apex predator, the...
Bias from false-positive detections and strategies for their removal in studies using telemetry
John W. Beeman, Russell W. Perry
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
The use of radio and acoustic telemetry to study aquatic animals has flourished since the 1950s and 1960s (see Section 1). Electronic data-logging receivers are commonly used in both types of active telemetry to record the presence of transmitters in the detection field formed by one or more antennas or...
Induced polarization for subseafloor, deep ocean mapping - Marine induced polarization used for 3D mapping of subseafloor minerals and 4D oil-in-seawater characterization
Jeff Wynn, Mike Williamson, John Fleming
2012, Sea Technology (53) 47-50
No abstract available....
Using mark-recapture models to estimate survival from telemetry data: Chapter 9.2
Russell W. Perry, Theodore R. Castro-Santos, Christopher M. Holbrook, Benjamin P. Sandford
Noah Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Analyzing telemetry data within a mark–recapture framework is a powerful approach for estimating demographic parameters (e.g., survival and movement probabilities) that might otherwise be difficult to measure. Yet many studies using telemetry techniques focus on fish behavior and fail to recognize the potential of telemetry data to provide information about...
Developing a quality assurance plan for telemetry studies: A necessary management tool for an effective study
Jill M. Hardiman, Christopher E. Walker, Timothy D. Counihan
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Telemetry has been used to answer various questions associated with research, management, and monitoring programs and to monitor animal behavior and population dynamics throughout the world. Many telemetry projects have been developed to study the passage, behavior, and survival of migrating adult and juvenile salmonids at hydroelectric projects on the...
Time-to-event analysis as a framework for quantifying fish passage performance
Theodore R. Castro-Santos, Russell W. Perry
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Fish passage is the result of a sequence of processes, whereby fish must approach, enter, and pass a structure. Each of these processes takes time, and fishway performance is best quantified in terms of the rates at which each process is completed. Optimal performance is achieved by maximizing the rates...
Range expansion of nonindigenous caribou in the Aleutianarchipelago of Alaska
Mark A. Ricca, Floyd W. Weckerly, Adam Duarte, Jeffrey C. Williams
2012, Biological Invasions (14) 1779-1784
Caribou (Rangifer tarandus) are nonindigenous to all but the eastern-most island of the Aleutian archipelago of Alaska. In 1958–1959, caribou were intentionally introduced to Adak Island in the central archipelago, and the population has at least tripled in recent years subsequent to the closure of a naval air facility. Although...
User’s guide and metada for the PICES Nonindigenous Species Information System
Lee Henry II, Deborah A. Reusser, Katharine Marko Katharine, Marla Ranelletti Marla
2012, Report
Introduction Welcome to the PICES Nonindigenous Species Information System, a Microsoft Access database that displays the biogeographic distributions, invasion status, vectors, and key life history attributes of the approximately 740 reported nonindigenous species (NIS) in the estuarine and near-coastal habitats of the North Pacific and Hawaii. This database was developed by...
Use of acoustic telemetry to evaluate survival and behavior of juvenile salmonids at hydroelectric dams: A case study from Rocky Reach Dam, Columbia River, USA: Chapter 8.1
Tracy W. Steigl, Christopher M. Holbrook
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Telemetry provides a powerful and flexible tool for studying fish and other aquatic animals, and its use has become increasingly commonplace. However, telemetry is gear intensive and typically requires more specialized knowledge and training than many other field techniques. As with other scientific methods, collecting good data is dependent on...
Design and performance of radio telemetry systems for assessing juvenile fish passage at three hydroelectric dams
John W. Beeman, Eric Hockersmith, John R. Stevenson
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Studies of the effects of hydroelectric dams on fish populations are common (Williams 2008). Dams block passage of migratory and resident fish, alter habitats from free-flowing to lacustrine, and can alter water temperatures both upstream and downstream. At some dams, structures or operations are modified to reduce their effects on...
Optimization of radio telemetry receiving systems
Scott D. Evans, John R. Stevenson
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
The performance of radio telemetry receiving systems can be affected by numerous factors, thus it is important for researchers to understand these factors when designing a radio telemetry study. One approach that has been used to describe these factors is the radio system equation which defines six variables that affect...
Techniques for telemetry transmitter attachment and evaluation of transmitter effects on fish performance: Chapter 4
Theresa L. Liedtke, A. Michelle Wargo Rub
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
One assumption of nearly every biotelemetry study is that the tagged animals are representative of the untagged population. That is, that the processes by which study animals are captured, handled, and tagged, as well as the act of carrying a transmitter, will have minimal effect on their behavior and performance....
Atlas of nonindigenous marine and estuarine species in the North Pacific
Lee Henry II, Deborah A. Reusser
2012, Report
Executive Summary Marine and estuarine nonindigenous species (NIS) are found across the world’s oceans, and designing effective management strategies to mitigate this economic, ecological and human health threat requires a basic understanding of the existing invasion patterns at regional to global scales. However, to date, syntheses at ocean basin scales have...
A history of telemetry in fishery research
Eric Hockersmith, John W. Beeman
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
Biotelemetry has been defined as “the instrumental technique for gaining and transmitting information from a living organism and its environment to a remote observer” (Slater 1965). Biotelemetry typically utilizes wireless transmission of either an audible signal or electronic data to determine location of a tagged animal. Fisheries researchers use location...
Non-lethal sampling of walleye for stable isotope analysis: a comparison of three tissues
Steven R. Chipps, J.A. VanDeHey, M.J. Fincel
2012, Fisheries Management and Ecology (19) 283-292
Stable isotope analysis of fishes is often performed using muscle or organ tissues that require sacrificing animals. Non-lethal sampling provides an alternative for evaluating isotopic composition for species of concern or individuals of exceptional value. Stable isotope values of white muscle (lethal) were compared with those from fins and scales...
Introduction
Noah S. Adams, John W. Beeman, John H. Eiler, editor(s)
2012, Book chapter, Telemetry techniques: A user guide for fisheries research
elemetry provides a powerful and flexible tool for studying aquatic animals, making it possible to repeatedly locate and identify individuals in remote or inaccessible settings—a task that would be difficult (if not impossible) to accomplish using other methods. The use of telemetry has increased dramatically in recent years,...
Reading the climate record of the martian polar layered deposits
C.S. Hvidberg, K.E. Fishbaugh, M. Winstrup, A. Svensson, S. Byrne, Kenneth E. Herkenhoff
2012, Icarus (221) 405-419
The martian polar regions have layered deposits of ice and dust. The stratigraphy of these deposits is exposed within scarps and trough walls and is thought to have formed due to climate variations in the past. Insolation has varied significantly over time and caused dramatic changes in climate, but it...
Unintended consequences and trade-offs of fish passage
Robert L. McLaughlin, Eric R. Smyth, Theodore Castro-Santos, Michael L. Jones, Marten A. Koops, Thomas C. Pratt, Luis-Antonio Velez-Espino
2012, Fish and Fisheries (14) 580-604
We synthesized evidence for unintended consequences and trade-offs associated with the passage of fishes. Provisioning of fish passageways at dams and dam removals are being carried out increasingly as resource managers seek ways to reduce fragmentation of migratory fish populations and restore biodiversity and nature-like ecosystem services in tributaries altered...
Tidal and groundwater fluxes to a shallow, microtidal estuary: Constraining inputs through field observations and hydrodynamic modeling
Neil K. Ganju, Melanie Hayn, Shih-Nan Chen, Robert W. Howarth, Patrick J. Dickhudt, Alfredo L. Aretxabaleta, Roxanne Marino
2012, Estuaries and Coasts (35) 1285-1298
Increased nutrient loading to estuaries has led to eutrophication, degraded water quality, and ecological transformations. Quantifying nutrient loads in systems with significant groundwater input can be difficult due to the challenge of measuring groundwater fluxes. We quantified tidal and freshwater fluxes over an 8-week period at the entrance of West...
Calcite growth-rate inhibition by fulvic acid and magnesium ion—Possible influence on biogenic calcite formation
Michael M. Reddy
2012, Journal of Crystal Growth (352) 151-154
Increases in ocean surface water dissolved carbon dioxide (CO2) concentrations retard biocalcification by reducing calcite supersaturation (Ωc). Reduced calcification rates may influence growth-rate dependent magnesium ion (Mg) incorporation into biogenic calcite modifying the use of calcifying organisms as paleoclimate proxies. Fulvic acid (FA) at biocalcification sites may further reduce calcification...
Developing a broader scientific foundation for river restoration: Columbia River food webs
Robert J. Naiman, Richard Alldredge, David A. Beauchamp, Peter A. Bisson, James Congleton, Charles J. Henny, Nancy Huntly, Roland Lamberson, Colin Levings, Erik N. Merrill, William G. Pearcy, Bruce E. Rieman, Gregory T. Ruggerone, Dennis Scarnecchia, Peter E. Smouse, Chris C. Wood
2012, Proceedings of the National Academy of Sciences of the United States of America (109) 21201-21207
Well-functioning food webs are fundamental for sustaining rivers as ecosystems and maintaining associated aquatic and terrestrial communities. The current emphasis on restoring habitat structure—without explicitly considering food webs—has been less successful than hoped in terms of enhancing the status of targeted species and often overlooks important constraints on ecologically effective...
A climate trend analysis of Mali
Christopher C. Funk, Jim Rowland, Alkhalil Adoum, Gary Eilerts, Libby White
2012, Fact Sheet 2012-3105
This brief report, drawing from a multi-year effort by the U.S. Agency for International Development (USAID) Famine Early Warning Systems Network (FEWS NET), identifies modest declines in rainfall, accompanied by increases in air temperatures. These analyses are based on quality-controlled station observations. Conclusions: * Summer rains have remained relatively steady...