Shorebird surveys in western Alaska
Brian J. McCaffery, Jonathan Bart, Catherine Wightman, David J. Krueper
2012, Book chapter, Arctic shorebirds in North America: A decade of monitoring
Surveys for breeding shorebirds were conducted during 2001-2002 in four National Wildlife Refuges (NWRs) in western Alaska - Alaska Maritime, Alaska Peninsula, Yukon Delta and Selawik. The sizes of our study areas on and adjacent to these four refuges were 9,243 km2, 24,493 km2, 853 km2, and 15,170 km2, respectively....
PhyloChipTM microarray comparison of sampling methods used for coral microbial ecology
Christina A. Kellogg, Yvette M. Piceno, Lauren M. Tom, Todd Z. DeSantis, David G. Zawada, Gary L. Andersen
2012, Journal of Microbiological Methods (88) 103-109
Interest in coral microbial ecology has been increasing steadily over the last decade, yet standardized methods of sample collection still have not been defined. Two methods were compared for their ability to sample coral-associated microbial communities: tissue punches and foam swabs, the latter being less invasive and preferred by reef...
Microbial water quality before and after the repair of a failing onsite wastewater treatment system adjacent to coastal waters
K.E. Conn, M.Y. Habteselassie, Blackwood A. Denene, R.T. Noble
2012, Journal of Applied Microbiology (112) 214-224
Aims: The objective was to assess the impacts of repairing a failing onsite wastewater treatment system (OWTS, i.e., septic system) as related to coastal microbial water quality. Methods and Results: Wastewater, groundwater and surface water were monitored for environmental parameters, faecal indicator bacteria (total coliforms, Escherichia coli, enterococci) and the...
Mesoproterozoic syntectonic garnet within Belt Supergroup metamorphic tectonites: Evidence of Grenville-age metamorphism and deformation along northwest Laurentia
T.O. Nesheim, J.D. Vervoort, W.C. McClelland, J. A. Gilotti, H.M. Lang
2012, LITHOS (134-135) 91-107
Northern Idaho contains Belt-Purcell Supergroup equivalent metamorphic tectonites that underwent two regional deformational and metamorphic events during the Mesoproterozoic. Garnet-bearing pelitic schists from the Snow Peak area of northern Idaho yield Lu–Hf garnet-whole rock ages of 1085 ± 2 Ma, 1198 ± 79 Ma, 1207 ± 8 Ma, 1255 ± 28 Ma, and 1314 ± 2 Ma. Garnet from one sample, collected from the Clarkia...
Novel plant communities limit the effects of a managed flood to restore riparian forests along a large regulated river
D.J. Cooper, D.C. Andersen
2012, River Research and Applications (28) 204-215
Dam releases used to create downstream flows that mimic historic floods in timing, peak magnitude and recession rate are touted as key tools for restoring riparian vegetation on large regulated rivers. We analysed a flood on the 5th‐order Green River below Flaming Gorge Dam, Colorado, in a broad alluvial valley...
The use of multiobjective calibration and regional sensitivity analysis in simulating hyporheic exchange
Ramon C. Naranjo, Richard G. Niswonger, Mark Stone, Clinton Davis, Alan McKay
2012, Water Resources Research (48)
We describe an approach for calibrating a two-dimensional (2-D) flow model of hyporheic exchange using observations of temperature and pressure to estimate hydraulic and thermal properties. A longitudinal 2-D heat and flow model was constructed for a riffle-pool sequence to simulate flow paths and flux rates for variable discharge conditions....
Crucial nesting habitat for gunnison sage-grouse: A spatially explicit hierarchical approach
Cameron L. Aldridge, D.J. Saher, T.M. Childers, K.E. Stahlnecker, Z.H. Bowen
2012, Journal of Wildlife Management (76) 391-406
Gunnison sage-grouse (Centrocercus minimus) is a species of special concern and is currently considered a candidate species under Endangered Species Act. Careful management is therefore required to ensure that suitable habitat is maintained, particularly because much of the species' current distribution is faced with exurban development pressures. We assessed hierarchical...
Mapping ground surface deformation using temporarily coherent point SAR interferometry: Application to Los Angeles Basin
L. Zhang, Zhong Lu, X. Ding, H.-S. Jung, G. Feng, C.-W. Lee
2012, Remote Sensing of Environment (117) 429-439
Multi-temporal interferometric synthetic aperture radar (InSAR) is an effective tool to detect long-term seismotectonic motions by reducing the atmospheric artifacts, thereby providing more precise deformation signal. The commonly used approaches such as persistent scatterer InSAR (PSInSAR) and small baseline subset (SBAS) algorithms need to resolve the phase ambiguities in interferogram...
The challenges of implementing pathogen control strategies for fishes used in biomedical research
C. Lawrence, D.G. Ennis, C. Harper, M.L. Kent, K. Murray, George Sanders
2012, Comparative Biochemistry and Physiology, Part C: Toxicology & Pharmacology (155) 160-166
Over the past several decades, a number of fish species, including the zebrafish, medaka, and platyfish/swordtail, have become important models for human health and disease. Despite the increasing prevalence of these and other fish species in research, methods for health maintenance and the management of diseases in laboratory populations of...
Slab1.0: A three-dimensional model of global subduction zone geometries
Gavin P. Hayes, David J. Wald, Rebecca L. Johnson
2012, Journal of Geophysical Research B: Solid Earth (117)
We describe and present a new model of global subduction zone geometries, called Slab1.0. An extension of previous efforts to constrain the two-dimensional non-planar geometry of subduction zones around the focus of large earthquakes, Slab1.0 describes the detailed, non-planar, three-dimensional geometry of approximately 85% of subduction zones worldwide. While the...
A method for physically based model analysis of conjunctive use in response to potential climate changes
R. T. Hanson, L. E. Flint, A. L. Flint, M. D. Dettinger, C.C. Faunt, D. Cayan, W. Schmid
2012, Water Resources Research (48)
Potential climate change effects on aspects of conjunctive management of water resources can be evaluated by linking climate models with fully integrated groundwater-surface water models. The objective of this study is to develop a modeling system that links global climate models with regional hydrologic models, using the California Central Valley...
A newly discovered impact crater in Titan's Senkyo: Cassini VIMS observations and comparison with other impact features
B. J. Buratti, Christophe Sotin, K. Lawrence, R. H. Brown, Stéphane Le Mouélic, J.M. Soderblom, J. Barnes, Roger N. Clark, K. H. Baines, P. D. Nicholson
2012, Planetary and Space Science (60) 18-25
Senkyo is an equatorial plain on Titan filled with dunes and surrounded by hummocky plateaus. During the Titan targeted flyby T61 on August 25, 2009, the Cassini Visual and Infrared Mapping Spectrometer (VIMS) onboard the Cassini spacecraft observed a circular feature, centered at 5.4° N and 341°W, that superimposes the dune fields and a...
Mapping carbon flux uncertainty and selecting optimal locations for future flux towers in the Great Plains
Yingxin Gu, Daniel M. Howard, Bruce K. Wylie, Li Zhang
2012, Landscape Ecology (27) 319-326
Flux tower networks (e. g., AmeriFlux, Agriflux) provide continuous observations of ecosystem exchanges of carbon (e. g., net ecosystem exchange), water vapor (e. g., evapotranspiration), and energy between terrestrial ecosystems and the atmosphere. The long-term time series of flux tower data are essential for studying and understanding terrestrial carbon cycles,...
A multi-source satellite data approach for modelling Lake Turkana water level: Calibration and validation using satellite altimetry data
N.M. Velpuri, Gabriel B. Senay, K.O. Asante
2012, Hydrology and Earth System Sciences (16) 1-18
Lake Turkana is one of the largest desert lakes in the world and is characterized by high degrees of inter- and intra-annual fluctuations. The hydrology and water balance of this lake have not been well understood due to its remote location and unavailability of reliable ground truth datasets. Managing surface...
Advancing representation of hydrologic processes in the Soil and Water Assessment Tool (SWAT) through integration of the TOPographic MODEL (TOPMODEL) features
J. Chen, Y. Wu
2012, Journal of Hydrology (420-421) 319-328
This paper presents a study of the integration of the Soil and Water Assessment Tool (SWAT) model and the TOPographic MODEL (TOPMODEL) features for enhancing the physical representation of hydrologic processes. In SWAT, four hydrologic processes, which are surface runoff, baseflow, groundwater re-evaporation and deep aquifer percolation, are modeled by...
Why farmers adopt best management practice in the United States: A meta-analysis of the adoption literature
Adam Baumgart-Getz, Linda Stalker Prokopy, Kristin Floress
2012, Journal of Environmental Management (96) 17-25
This meta-analysis of both published and unpublished studies assesses factors believed to influence adoption of agricultural Best Management Practices in the United States. Using an established statistical technique to summarize the adoption literature in the United States, we identified the following variables as having the largest impact on adoption: access...
Relationships between yolk androgens and nest density, laying date, and laying order in Western Burrowing Owls (Athene cunicularia hypugaea)
J.L. Welty, J.R. Belthoff, J. Egbert, H. Schwabl
2012, Canadian Journal of Zoology (90) 182-192
Increases in yolk androgens within and among avian clutches have been correlated with decreased incubation time, increased aggression within a nest, increased begging behaviour, decreased immune response, and decreased life span. Although the mechanisms that lead to variability in yolk androgens within and between clutches are not completely known, yolk...
Numerical models of salt marsh evolution: Ecological, geomorphic, and climatic factors
S. Fagherazzi, M. L. Kirwan, S.M. Mudd, G.R. Guntenspergen, S. Temmerman, A. D'Alpaos, J. Van De Koppel, J.M. Rybczyk, E. Reyes, C. Craft, J. Clough
2012, Reviews of Geophysics (50)
Salt marshes are delicate landforms at the boundary between the sea and land. These ecosystems support a diverse biota that modifies the erosive characteristics of the substrate and mediates sediment transport processes. Here we present a broad overview of recent numerical models that quantify the formation and evolution of salt...
Quantifying riverine surface currents from time sequences of thermal infrared imagery
Jack A. Puleo, T.E. McKenna, K. T. Holland, J. Calantoni
2012, Water Resources Research (48)
River surface currents are quantified from thermal and visible band imagery using two methods. One method utilizes time stacks of pixel intensity to estimate the streamwise velocity at multiple locations. The other method uses particle image velocimetry to solve for optimal two-dimensional pixel displacements between successive frames. Field validation was...
Forest structure affects trophic linkages: How silvicultural disturbance impacts bats and their insect prey
L.E. Dodd, M.J. Lacki, E.R. Britzke, D.A. Buehler, P.D. Keyser, J.L. Larkin, A.D. Rodewald, T.B. Wigley, P.B. Wood, L.K. Rieske
2012, Forest Ecology and Management (267) 262-270
Vertebrate insectivores such as bats are a pervasive top-down force on prey populations in forest ecosystems. Conservation focusing on forest-dwelling bats requires understanding of community-level interactions between these predators and their insect prey. Our study assessed bat activity and insect occurrence (abundance and diversity) across a gradient of forest disturbance...
Simultaneous oxidation of arsenic and antimony at low and circumneutral pH, with and without microbial catalysis
Maria P. Asta, D. Kirk Nordstrom, R. Blaine McCleskey
2012, Applied Geochemistry (27) 281-291
Arsenic and Sb are common mine-water pollutants and their toxicity and fate are strongly influenced by redox processes. In this study, simultaneous Fe(II), As(III) and Sb(III) oxidation experiments were conducted to obtain rates under laboratory conditions similar to those found in the field for mine waters of both low and...
Aerial survey estimates of fallow deer abundance
Peter J. Gogan, Natalie B. Gates, Bruce C. Lubow, Suzanne Pettit
2012, California Fish and Game (98) 135-147
Reliable estimates of the distribution and abundance of an ungulate species is essential prior to establishing and implementing a management program. We used ground surveys to determine distribution and ground and aerial surveys and individually marked deer to estimate the abundance of fallow deer (Dama dama) in north-coastal California. Fallow...
Supplementing seed banks to rehabilitate disturbed Mojave Desert shrublands: Where do all the seeds go?
Lesley A. DeFalco, Todd Esque, Melissa B. Nicklas, Jeffrey M. Kane
2012, Restoration Ecology (20) 85-94
Revegetation of degraded arid lands often involves supplementing impoverished seed banks and improving the seedbed, yet these approaches frequently fail. To understand these failures, we tracked the fates of seeds for six shrub species that were broadcast across two contrasting surface disturbances common to the Mojave Desert—sites compacted by concentrated...
Ecoregional analysis of nearshore sea-surface temperature in the North Pacific
M.C. Payne, C.A. Brown, D.A. Reusser, H. Lee II
2012, PLoS ONE (7)
The quantification and description of sea surface temperature (SST) is critically important because it can influence the distribution, migration, and invasion of marine species; furthermore, SSTs are expected to be affected by climate change. To better understand present temperature regimes, we assembled a 29-year nearshore time series of...
Subducted seamounts and recent earthquakes beneath the central Cascadia forearc
Anne M. Trehu, Richard J. Blakely, Mark C. Williams
2012, Geology (40) 103-106
Bathymetry and magnetic anomalies indicate that a seamount on the Juan de Fuca plate has been subducted beneath the central Cascadia accretionary complex and is now located ∼45 km landward of the deformation front. Passage of this seamount through the accretionary complex has resulted in a pattern of uplift followed...