Deep learning of estuary salinity dynamics is physically accurate at a fraction of hydrodynamic model computational cost
Galen Agnew Gorski, Salme Ellen Cook, Amelia Marie Snyder, Alison P. Appling, Theodore Paul Thompson, Jared David Smith, John C. Warner, Simon Nemer Topp
2024, Limnology and Oceanography (69) 1070-1085
Salinity dynamics in the Delaware Bay estuary are a critical water quality concern as elevated salinity can damage infrastructure and threaten drinking water supplies. Current state-of-the-art modeling approaches use hydrodynamic models, which can produce accurate results but are limited by significant computational costs. We...
New diagnostic assessment of MCMC algorithm effectiveness, efficiency, reliability, and controllability
Hossein KavianiHamedani, Julianne D. Quinn, Jared David Smith
2024, IEEE Access (12) 42385-42400
Markov Chain Monte Carlo (MCMC) is a robust statistical approach for estimating posterior distributions. However, the significant computational cost associated with MCMC presents a considerable challenge, complicating the selection of an appropriate algorithm tailored to the specific problem at hand. This study introduces a novel and comprehensive framework for...
Plant size, latitude, and phylogeny explain within-population variability in herbivory
The Herbivory Variability Network, Moria Robinson, Karen C Abbott, Warwick J. Allen, Janete Andrade, Diego Angulo, Diego Anjos, Daniel Anstett, Robert Bagchi, Sumanta Bagchi, Milton Barbosa, Sarah Barrett, Carina Baskett, Eyal Ben-Simchon, Kathryn Bloodworth, Judith L. Bronstein, Emilio Bruna, Yvonne Buckley, Karin Burghardt, Carlos Bustos-Segura, N. Ivalú Cacho, Eduardo Soares Calixto, Raquel Carvalho, Bastien Castagneyrol, Mariana Chiuffo, Damla Cinoğlu, Elizeth Cinto Mejia, Marina Cock, Rodrigo Cogni, Olivia Cope, Tatiana Cornelissen, Dezirea Cortez, David Crowder, Caroline Dallstream, Wesley Dáttilo, Julien Davis, Romina Dimarco, Haley Dole, Lee Dyer, Ikponmwosa Egbon, Afure Ejomah, Bret D Elderd, María-José Endara, Micky D. Eubanks, Susan Everingham, Keiko Farah, Rafael de Paiva Farias, Geraldo Fernandes, Marco Ferrante, Alain Finn, Grace Florjancic, Matthew L. Forister, Quinn Fox, Enric Frago, Filipe M. França, Abigail Getman-Pickering, Zoe Getman-Pickering, Ben Gooden, Martin M. Gossner, Keri Greig, Sofia Gripenberg, Ronny Groenteman, Patrick Grof-Tisza, Nora Haack, Lisa Hahn, Philip Hahn, Shiekh Marifatul Haq, Justus Hennecke, Sara Hermann, Liza M. Holeski, Matthew Hutchinson, Brian Inouye, Eleanor Jackson, Shinnosuke Kagiya, Michael Kalwajtys, Richard Karban, Rupesh Kariyat, Tamar Keasar, Monica Kersch-Becker, Heather Kharouba, Tania Kim, Duncan Kimuyu, Jennifer Kluse, Sally E. Koerner, Kimberly Komatsu, Sushmita Krishnan, Miika Laihonen, Lucas Lamelas-López, Michael LaScaleia, Nicolas Lecomte, Carlos Lehn, Xiaofei Li, Richard L Lindroth, Eric LoPresti, María Losada, Allison M Louthan, Victoria Luizzi, Joshua Lynn, Nicholas Lyon, Laís Maia, Renata Maia, Tosca Mannall, Bruce Martin, Tara Massad, Andrew McCall, Kelsey McGurrin, Andrew Merwin, Zarluis Mijango-Ramos, Charlotte Mills, Angela Moles, Christopher Moore, Colin Morrison, Moleseng Moshobane, Anne Muola, Ryosuke Nakadai, Kazuhide Nakajima, Samuel Novais, Charlee Ogbebor, Haruna Ohsaki, Vincent Pan, Nicholas Pardikes, Narayanaswamy Parthasarathy, Rohit Pawar, Quentin Paynter, Ian Pearse, Rachel Penczykowski, Adam Pepi, Cássio Pereira, Shyam Phartyal, Frida I. Piper, Katja Poveda, Elizabeth Pringle, Javier Puy, Teresa Quijano, Carolina Quintero, Sergio Rasmann, Christoph Rosche, Leah Rosenheim, Justin B. Runyon, Asaf Sadeh, Yuzu Sakata, Danielle Salcido, Cristian Salgado-Luarte, Bráulio Santos, Yuval Sapir, Yamila Sasal, Yasuhiro Sato, Manasi Sawant, Hayley Schroeder, Isabell Schumann, Michal Segoli, Hila Segre, Oren Shelef, Naoto Shinohara, Rachit Pratap Singh, David Smith, Mar Sobral, Gisela Stotz, Ayco Tack, Mandeep Tayal, John Tooker, Daniel Torrico-Bazoberry, Kévin Tougeron, Nora Underwood, Shunsuke Utsumi, Osariyekemwen Uyi, Jessica Vaca-Uribe, Anu Valtonen, Laura van Dijk, Vigdis Vandvik, Jesus Villellas, Lauren Waller, Marjorie G. Weber, William C. Wetzel, Susan Whitehead, Akira Yamawo, Samantha Yim, Luke Zehr, Zhiwei Zhong
2023, Science (382) 679-683
Interactions between plants and herbivores are central in most ecosystems, but their strength is highly variable. The amount of variability within a system is thought to influence most aspects of plant-herbivore biology, from ecological stability to plant defense evolution. Our understanding of what influences variability, however, is limited by sparse...
Application of a catch multiple survey analysis for Atlantic horseshoe crab Limulus polyphemus in the Delaware Bay
Kristen A. Anstead, John A. Sweka, Linda Barry, Eric M. Hallerman, David R. Smith, Natalie Ameral, Michael Schmidtke, Richard A. Wong
2023, Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science (15)
ObjectiveThis paper applies a catch multiple survey analysis (CMSA) to Atlantic horseshoe crabs Limulus polyphemus in the Delaware Bay to generate robust population estimates for harvest management. Currently, horseshoe crabs along the U.S. Atlantic coast are harvested as bait for other fisheries and collected for their blood, which is...
Application of the technology readiness levels framework to natural resource management tools
Aaron R. Cupp, Andrea K. Fritts, Marybeth K. Brey, Christa M. Woodley, David Smith, Mark Cornish, Amy McGovern, Rob Simmonds, Neal Jackson
2023, Fisheries (48) 474-479
Technology advancements in fisheries science can provide useful tools to support natural resource management and conservation. However, new technologies may also present challenges for decision makers due to the lack of a standardized process to assess technologies for consideration within management plans. Future technology development in fishery and water resources...
Assessment of recovery potential for the American horseshoe crab (Limulus polyphemus): An application of the IUCN green status process
David R. Smith, H. Jane Brockmann, Ruth H. Carmichael, Eric M. Hallerman, W.M. Watson, Jaime Zaldivar-Rae
2023, Aquatic Conservation: Marine and Freshwater Ecosystems (33) 1175-1199
According to an International Union for Conservation of Nature (IUCN) Red List assessment (RLA), the American horseshoe crab (Limulus polyphemus), an iconic coastal species, is at risk of extirpation in some regions within its range where small and vulnerable populations occur. However, the RLA does not consider future status...
Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock
Maggie Jo Raboin, John Plumb, Matthew Sholtis, David Smith, P. Ryan Jackson, Jose Rivera, Cory D. Suski, Aaron R. Cupp
2023, Movement Ecology (11)
Freshwater ecosystems are some of the most affected by biological invasions due, in part, to the introduction of invasive carp worldwide. Where carp have become established, management programs often seek to limit further range expansion into new areas by reducing their movement through interconnected rivers and waterways. Lock and dams...
A science and management partnership to restore coregonine diversity to the Laurentian Great Lakes
David Bunnell, Amanda Susanne Ackiss, Karen M Alofs, Cory Brant, Charles R. Bronte, Randall M. Claramunt, John M. Dettmers, Andrew Edgar Honsey, Nicholas E. Mandrak, Andrew M. Muir, Victor Santucci, David R. Smith, Russell M. Strach, John A. Sweka, Brian C. Weidel, William Mattes, Kurt R. Newman
2023, Environmental Reviews (31) 716-738
Similar to many freshwater ecosystems, the Laurentian Great Lakes of North America have undergone numerous anthropogenic stressors resulting in considerable loss of biodiversity and habitat. Among Great Lakes fishes, the coregonine sub-family has endured the most extensive declines, including extinction of several species (Coregonus johannae, C. alpenae,...
When are environmental DNA early detections of invasive species actionable?
Adam Sepulveda, Christine E. Dumoulin, Denise L. Blanchette, John Mcphedran, Colin Holme, Nathan Whalen, Maggie Hunter, Christopher M. Merkes, Catherine A. Richter, Matthew Neilson, Wesley M. Daniel, Devin Nicole Jones, David R. Smith
2023, Journal of Environmental Management (343)
Environmental DNA (eDNA) sampling provides sensitive early detection capabilities for recently introduced taxa. However, natural resource managers struggle with how to integrate eDNA results into an early detection rapid response program because positive eDNA detections are not always indicative of...
Creating conservation strategies with value-focused thinking
David M. Martin, Joshua Goldstein, David R. Smith, Jessica Musengezi, Jessie G. Rountree, Pabodha G. A. Galgamuwe, Aileen Craig, Michelle Dietz, Caitlin Kerr
2023, Conservation Biology (37)
Biodiversity and human well-being strategies are only as good as the set of ideas that people think about. This article evaluates value-focused thinking (VFT), a framework that focuses on creating objectives and strategy ideas that are responsive to the objectives. We performed a proof-of-concept study of VFT on six planning...
Incorporating temperature into seepage loss estimates for a large unlined irrigation canal
Ramon C. Naranjo, David Smith, Evan J. Lindenbach
2023, Journal of Hydrology (617)
Quantifying seepage losses from unlined irrigation canals is necessary to improve water use and conservation. The use of heat as a tracer is widely used in quantifying seepage rates across the sediment–water interface. In this study, field observations and two-dimensional numerical models...
Horseshoe crab
David R. Smith
2022, Book chapter, Technical report for the Delaware estuary and basin, PDE Report No. 22-05
No abstract available....
Multispecies approaches to status assessments in support of endangered species classifications
Daniel Bruce Fitzgerald, Mary Freeman, Kelly O. Maloney, John A. Young, Amanda E. Rosenberger, David C. Kazyak, David R. Smith
2022, Conservation Science and Practice (4)
Multispecies risk assessments have developed within many international conservation programs, reflecting a widespread need for efficiency. Under the United States Endangered Species Act (ESA), multispecies assessments ultimately lead to species-level listing decisions. Although this approach provides opportunities for improved efficiency, it also risks overwhelming or biasing the assessment process and...
Using structured decision making to evaluate potential management responses to detection of dreissenid mussel (Dreissena spp.) environmental DNA
Adam Sepulveda, David R. Smith, Katherine M O'Donnell, Nathan Owens, Brittany White, Cathy A. Richter, Christopher M. Merkes, Skylar Wolf, Mike Rau, Matthew Neilson, Wesley M. Daniel, Christine E. Dumoulin, Margaret Hunter
2022, Management of Biological Invasions (13) 344-368
Environmental (e)DNA tools are sensitive and cost-effective for early detection of invasive species. However, the uncertainty associated with the interpretation of positive eDNA detections makes it challenging to determine appropriate natural resource management responses. Multiple sources of error can give rise to positive detections of eDNA in a sample when...
Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species
Thomas J. Zolper, David Smith, P. Ryan Jackson, Aaron R. Cupp
2022, Journal of Environmental Engineering (148)
Natural resource agencies need effective strategies to control the spread of aquatic invasive species (AIS) such as invasive fish, which can expand their range using rivers as hydrological pathways to access new areas. Lock and dam structures within major rivers are prospective locations to deploy techniques, such...
Surface infiltration and unsaturated zone characterization in support of managed aquifer recharge in Bedell Flat, Washoe County, Nevada
Todd Caldwell, Ramon C. Naranjo, David Smith, Christian Kropf
2021, Scientific Investigations Report 2021-5137
Aquifer storage and recovery (ASR) expands the portfolio of public water supply and improves resiliency to drought and future water demand. This study investigated the feasibility of ASR in the Bedell Flat Hydrographic Area using land-based methods including in-channel managed aquifer recharge (MAR) and rapid infiltration basins (RIB). Bedell Flat,...
Telemetry reveals migratory drivers and disparate space use across seasons and age-groups in American horseshoe crabs
Justin J. Bopp, Matthew Sclafani, Michael G. Frisk, Kim McKown, Catherine Zeigler, David R. Smith, Robert Cerrato
2021, Ecosphere (12)
Identifying mechanisms that underpin animal migration patterns and examining variability in space use within populations is crucial for understanding population dynamics and management implications. In this study, we quantified the migration rates, seasonal changes in migratory connectivity, and residency across population demographics (age and sex) to...
Adaptive two-stage inverse sampling design to estimate density, abundance, and occupancy of rare and clustered populations
Mohammad Salehi, David R. Smith
2021, PLoS ONE (16)
Sampling rare and clustered populations is challenging because of the effort required to find rare units. Heuristically, a practitioner would prefer to discontinue sampling in areas where rare units of interest are apparently extremely sparse or absent. We take advantage of the characteristics of inverse sampling...
Decision analysis of barrier placement and targeted removal to control invasive carp in the Tennessee River Basin
Max Post van der Burg, David R. Smith, Aaron R. Cupp, Mark W. Rogers, Duane Chapman
2021, Open-File Report 2021-1068
Controlling range expansion of invasive carp (specifically Hypophthalmichthys spp.) on the Tennessee River is important to conserve the ecological and economic benefits provided by the river. We collaborated with State and Federal agencies (the stakeholder group) to develop a decision framework and decision support model to evaluate strategies to control...
Impacts of sediment removal from and placement in coastal barrier island systems
Jennifer L. Miselis, James G. Flocks, Sara Zeigler, Davina Passeri, David R. Smith, Jill Bourque, Christopher R. Sherwood, Christopher G. Smith, Daniel J. Ciarletta, Kathryn Smith, Kristen Hart, David C. Kazyak, Alicia Berlin, Bianca Prohaska, Teresa Calleson, Kristi Yanchis
2021, Open-File Report 2021-1062
Executive SummaryOn June 24, 2019, Congressman Raul Grijalva of Arizona, Chair of the House Committee on Natural Resources, sent a letter to the directors of the U.S. Fish and Wildlife Service and the U.S. Geological Survey to request their assistance in answering questions regarding coastal sediment resource management within the...
The contribution of land cover change to the decline of honey yields in the Northern Great Plains
David Smith, Amélie Y. Davis, Claudia Hitaj, Dan Hellerstein, Amanda Preslicka, Emma Kirkpatrick, David M. Mushet, Eric Lonsdorf
2021, Environmental Research Letters (16)
Decreased availability of forage, as well as increased pesticide exposure, are important factors in the decline of honey bee health. Here, we isolate land cover transitions and their effect on honey production at 160 commercial apiaries in the Northern Great Plains. We found that land cover changes from 2008 to...
Hydraulic characterization of carbonate-rock and basin-fill aquifers near Long Canyon, Goshute Valley, northeastern Nevada
C. Amanda Garcia, Keith J. Halford, Philip M. Gardner, David W. Smith
2021, Scientific Investigations Report 2021-5021
Understanding groundwater flow and pumping effects near pending mining operations requires accurate subsurface hydraulic characterization. To improve conceptual models of groundwater flow and development in the complex hydrogeologic system near Long Canyon Mine, in northwestern Goshute Valley, northeastern Nevada, the U.S. Geological Survey characterized the hydraulic properties of carbonate...
The contribution of water radiolysis to marine sedimentary life
Justine F. Sauvage, Ashton F. Flinders, Arthur J. Spivack, Robert Pockalny, Ann G. Dunlea, Chloe H. Anderson, David Smith, Richard W. Murray, Steven D’Hondt
2021, Nature Communications (12)
Water radiolysis continuously produces H2 and oxidized chemicals in wet sediment and rock. Radiolytic H2 has been identified as the primary electron donor (food) for microorganisms in continental aquifers kilometers below Earth’s surface. Radiolytic products may also be significant for sustaining life in subseafloor sediment and subsurface environments...
Using expert knowledge to support Endangered Species Act decision‐making for data‐deficient species
Daniel Bruce Fitzgerald, David R. Smith, David C. Culver, Daniel Feller, Daniel W. Fong, Jeff Hajenga, Matthew L. Niemiller, Daniel C. Nolfi, Wil D. Orndorff, Barbara Douglas, Kelly O. Maloney, John A. Young
2021, Conservation Biology (35) 1627-1638
Many questions relevant to conservation decision making are characterized by extreme uncertainty due to lack of empirical data and complexity of the underlying ecological processes, leading to a rapid increase in the use of structured protocols to elicit expert knowledge. Published ecological applications often employ a modified Delphi method, where...
Telemetry evaluation of carbon dioxide as a behavioral deterrent for invasive carps
Aaron R. Cupp, Ashley K Lopez, Justin Smerud, John A. Tix, Jose Rivera, Nicholas M. Swyers, Marybeth K. Brey, Christa M. Woodley, David L. Smith, Mark P. Gaikowski
2021, Journal of Great Lakes Research (47) 59-68
Carbon dioxide (CO2) mixed into water is being explored as a possible management strategy to deter the upstream movements of invasive carps through navigation locks and other migratory pinch-points. This study used two-dimensional acoustic telemetry to assess the effectiveness of dissolved CO2 as a chemosensory deterrent to two carp species in...
