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CWDPRNP: A tool for cervid prion sequence analysis in program R
William L. Miller, W. David Walter
2017, Bioinformatics (33) 3096-3097
Chronic wasting disease is a fatal, neurological disease caused by an infectious prion protein, which affects economically and ecologically important members of the family Cervidae. Single nucleotide polymorphisms within the prion protein gene have been linked to differential susceptibility to the disease in many species. Wildlife managers are seeking to...
Ecological impacts of winter water level drawdowns on lake littoral zones: A review
Allison H. Roy
2017, Aquatic Sciences (79) 803-824
Freshwater littoral zones harbor diverse ecological communities and serve numerous ecosystem functions that are controlled, in part, by natural water level fluctuations. However, human alteration of lake hydrologic regimes beyond natural fluctuations threaten littoral zone ecological integrity. One type of hydrologic alteration in lakes is winter water level drawdowns, which...
The lethality of hot water and ozone to aquatic invasive species
Riley Buley
2017, Thesis
The spread of Aquatic Invasive Species (AIS) between the Great Lakes and Mississippi River Basin by way of the Chicago Area Waterway System (CAWS) is a pressing concern to resource managers in the Midwest region. Augmenting this spread are watercrafts traveling through the CAWS locks and dams. AIS are able...
A fault‐based model for crustal deformation in the western United States based on a combined inversion of GPS and geologic inputs
Yuehua Zeng, Zheng-Kang Shen
2017, Bulletin of the Seismological Society of America (107) 2597-2612
We develop a crustal deformation model to determine fault‐slip rates for the western United States (WUS) using the Zeng and Shen (2014) method that is based on a combined inversion of Global Positioning System (GPS) velocities and geological slip‐rate constraints. The model consists of six blocks with...
Geothermal implications of a refined composition-age geologic map for the volcanic terrains of southeast Oregon, northeast California, and southwest Idaho, USA
Erick R. Burns, Marshall W. Gannett, David R. Sherrod, Mackenzie K. Keith, Jennifer A. Curtis, James R. Bartolino, John A. Engott, Benjamin P. Scandella, Michelle A. Stern, Alan L. Flint
2017, Conference Paper, Geothermal Resources Transactions
Sufficient temperatures to generate steam likely exist under most of the dominantly volcanic terrains of southeast Oregon, northeast California, and southeast Idaho, USA, but finding sufficient permeability to allow efficient advective heat exchange is an outstanding challenge. A new thematic interpretation of existing state-level geologic maps provides an updated and...
Martian cave air-movement via Helmholtz resonance
Kaj E. Williams, Timothy N. Titus, Chris Okubo, Glen E. Cushing
2017, International Journal of Speleology (46) 493-444
Infrasonic resonance has previously been measured in terrestrial caves by other researchers, where Helmholtz resonance has been suggested as the plausible mechanism resulting in periodic wind reversals within cave entrances. We extend this reasoning to possible Martian caves, where we examine the characteristics of four atypical pit craters (APCs) on...
Uptake and disposition of select pharmaceuticals by bluegill exposed at constant concentrations in a flow-through aquatic exposure system
Jian-Liang Zhao, Edward T. Furlong, Heiko L. Schoenfuss, Dana W. Kolpin, Kyle L. Bird, David J. Feifarek, Eric A. Schwab, Guang-Guo Ying
2017, Environmental Science & Technology (51) 4434-4444
The increasing use of pharmaceuticals has led to their subsequent input into and release from wastewater treatment plants, with corresponding discharge into surface waters that may subsequently exert adverse effects upon aquatic organisms. Although the distribution of pharmaceuticals in surface water has been extensively studied, the details of uptake, internal...
A method for quantifying cloud immersion in a tropical mountain forest using time-lapse photography
Maoya Bassiouni, Martha A. Scholl, Angel J. Torres-Sanchez, Sheila F. Murphy
2017, Agricultural and Forest Meteorology (243) 100-112
Quantifying the frequency, duration, and elevation range of fog or cloud immersion is essential to estimate cloud water deposition in water budgets and to understand the ecohydrology of cloud forests. The goal of this study was to develop a low-cost and high spatial-coverage method to detect occurrence of cloud immersion...
Nearshore fish community
James A. Hoyle, Michael J. Connerton, Dawn E. Dittman, Dimitry Gorsky, Jana R. Lantry, Alastair Mathers, Scott L. Schlueter, Maureen Walsh, Brian Weidel, Michael J. Yuille
2017, Report, The state of Lake Ontario in 2014
Lake Ontario’s nearshore fish community consists of a diverse assemblage of warm- and cool-water species. The “nearshore zone,” loosely separated from the “offshore zones” by the 15-m depth contour, consists of complex habitats spanning a gamut from vast open-coastal areas to sheltered embayments and wetlands. Lake Ontario’s nearshore habitat has...
Causes of distal volcano-tectonic seismicity inferred from hydrothermal modeling
Cecile A. Coulon, Paul A. Hsieh, Randall A. White, Jacob B. Lowenstern, Steven E. Ingebritsen
2017, Journal of Volcanology and Geothermal Research (345) 98-108
Distal volcano-tectonic (dVT) seismicity typically precedes eruption at long-dormant volcanoes by days to years. Precursory dVT seismicity may reflect magma-induced fluid-pressure pulses that intersect critically stressed faults. We explored this hypothesis using an open-source magmatic-hydrothermal code that simulates multiphase fluid and heat transport over the temperature range 0 to 1200 °C....
Pairing field methods to improve inference in wildlife surveys while accommodating detection covariance
John Clare, Shawn T. McKinney, John E. DePue, Cynthia S. Loftin
2017, Ecological Applications (27) 2031-2047
It is common to use multiple field sampling methods when implementing wildlife surveys to compare method efficacy or cost efficiency, integrate distinct pieces of information provided by separate methods, or evaluate method-specific biases and misclassification error. Existing models that combine information from multiple field methods or sampling devices permit rigorous...
Anura—Frogs
Darrel R. Frost, Emily Moriarty Lemmon, Roy W. McDiarmid, Joseph R. Mendelson III
2017, Book chapter, Scientific and Standard English names of amphibians and reptiles of North America north of Mexico, with comments regarding confidence in our understanding (8th)
No abstract available....
Climate impacts on agricultural land use in the USA: the role of socio-economic scenarios
Jianhong E. Mu, Benjamin M. Sleeter, John T. Abatzoglou, John M. Antle
2017, Climatic Change (144) 329-345
We examine the impacts of climate on net returns from crop and livestock production and the resulting impact on land-use change across the contiguous USA. We first estimate an econometric model to project effects of weather fluctuations on crop and livestock net returns and then use a semi-reduced form land-use...
Performance of Irikura recipe rupture model generator in earthquake ground motion simulations with Graves and Pitarka hybrid approach
Arben Pitarka, Robert Graves, Kojiro Irikura, Hiroe Miyake, Arthur Rodgers
2017, Pure and Applied Geophysics (174) 3537-3555
We analyzed the performance of the Irikura and Miyake (Pure and Applied Geophysics 168(2011):85–104, 2011) (IM2011) asperity-based kinematic rupture model generator, as implemented in the hybrid broadband ground motion simulation methodology of Graves and Pitarka (Bulletin of the Seismological Society of America 100(5A):2095–2123, 2010), for simulating ground motion from crustal...
Isotopic characterization of late Neogene travertine deposits at Barrancas Blancas in the eastern Atacama Desert, Chile
J. Quade, E.T. Rasbury, K.W. Huntington, Adam M. Hudson, H. Vonhof, K. Anchukaitis, Julio L. Betancourt, C. Latorre, M. Pepper
2017, Chemical Geology (466) 41-56
Here we explore the potential of spring-related, surface and subsurface carbonates as an archive of paleoenvironmental change at Barrancas Blancas, located in the broadest and driest sector of the Atacama Desert at 24.5°S. From these deposits we present a new stable isotopic record of paleoenvironmental conditions over portions of the...
Forecasting the (un)productivity of the 2014 M 6.0 South Napa aftershock sequence
Andrea L. Llenos, Andrew J. Michael
2017, Seismological Research Letters (88) 1241-1251
The 24 August 2014 Mw 6.0 South Napa mainshock produced fewer aftershocks than expected for a California earthquake of its magnitude. In the first 4.5 days, only 59 M≥1.8 aftershocks occurred, the largest of which was an M 3.9 that happened a little over two days after the mainshock. We investigate the aftershock productivity of...
Breeding behavior of northern saw-whet owls in Oregon
Jenna M. McCullough, Courtney J. Conway
2017, Northwest Science (91) 222-227
We know little about the breeding behavior of most nocturnal raptors. Nest attendance and prey delivery rates can be used as indices of relative habitat quality or extent of parental care. We used video cameras to document and observe prey delivery rates, nest attendance and bout durations at two northern...
Accounting for imperfect detection of groups and individuals when estimating abundance
Matthew J. Clement, Sarah J. Converse, J. Andrew Royle
2017, Ecology and Evolution (7) 7304-7310
If animals are independently detected during surveys, many methods exist for estimating animal abundance despite detection probabilities <1. Common estimators include double-observer models, distance sampling models and combined double-observer and distance sampling models (known as mark-recapture-distance-sampling models; MRDS). When animals reside in groups, however, the assumption of independent detection is...
Extreme precipitation variability, forage quality and large herbivore diet selection in arid environments
James W. Cain III, Jay V. Gedir, Jason P. Marshal, Paul R. Krausman, Jamison D. Allen, Glenn C. Duff, Brian Jansen, John R. Morgart
2017, Oikos (126) 1459-1471
Nutritional ecology forms the interface between environmental variability and large herbivore behaviour, life history characteristics, and population dynamics. Forage conditions in arid and semi-arid regions are driven by unpredictable spatial and temporal patterns in rainfall. Diet selection by herbivores should be directed towards overcoming the most pressing nutritional limitation (i.e....
Diet composition, quality and overlap of sympatric American pronghorn and gemsbok
James W. Cain III, Mindi M. Avery, Colleen A. Caldwell, Laurie B. Abbott, Jerry L. Holechek
2017, Wildlife Biology (2017) 1-10
Species with a long evolutionary history of sympatry often have mechanisms for resource partitioning that reduce competition. However, introduced non-native ungulates often compete with native ungulates and competitive effects can be exacerbated in arid regions due to low primary productivity. Our objectives were to characterize diet composition, quality, and overlap...
Experimental landscape reduction of wild rodents increases movements in the invasive brown treesnake (Boiga irregularis)
Michelle Christy, Julie A. Savidge, Amy A. Yackel Adams, James E. Gragg, Gordon H. Rodda
2017, Management of Biological Invasions (8) 455-467
Experimental studies evaluating the effects of food availability on the movement of free-ranging animals generally involve food supplementation rather than suppression. Both approaches can yield similar insights, but we were interested in the potential for using food suppression for the management and control of invasive predators, in particular, the brown...
Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae
Olin Feuerbacher, Scott A. Bonar, Paul J. Barrett
2017, North American Journal of Aquaculture (79) 106-114
We evaluated the effectiveness of four antibiotics in enhancing the hatch rate, larval survival, and adult survival of hybrid Devils Hole Pupfish Cyprinodon diabolis (hybridized with Ash Meadows Amargosa Pupfish C. nevadensis mionectes). Cephalexin (CEX; concentration = 6.6 mg/L of water), chloramphenicol (CAM; 50 mg/L), erythromycin (ERY; 12.5 mg/L), and trimethoprim sulfamethoxazole (TMP-SMX;...
Capturing change: the duality of time-lapse imagery to acquire data and depict ecological dynamics
Emma M. Brinley Buckley, Craig R. Allen, Michael Forsberg, Michael Farrell, Andrew J. Caven
2017, Ecology and Society (22) 1-12
We investigate the scientific and communicative value of time-lapse imagery by exploring applications for data collection and visualization. Time-lapse imagery has a myriad of possible applications to study and depict ecosystems and can operate at unique temporal and spatial scales to bridge the gap between large-scale satellite imagery projects and...
Culturally induced range infilling of eastern redcedar: a problem in ecology, an ecological problem, or both?
Aubrey Streit Krug, Daniel R. Uden, Craig R. Allen, Dirac Twidwell
2017, Ecology and Society (22)
The philosopher John Passmore distinguished between (1) “problems in ecology,” or what we might call problems in scientific understanding of ecological change, and (2) “ecological problems,” or what we might call problems faced by societies due to ecological change. The spread of eastern redcedar (Juniperus virginiana) and conversion of the...