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Publication Extents

Not all publications have extents, not all extents are completely accurate
Biogeographic comparison of Lophelia-associated bacterial communities in the Western Atlantic reveals conserved core microbiome
Christina A. Kellogg, Dawn B. Goldsmith, Michael A. Gray
2017, Frontiers in Microbiology (8)
Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa, a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites...
Conservation challenges and research needs for Pacific lamprey in the Columbia River Basin
Benjamin J. Clemens, Richard J. Beamish, Kelly C. Coates, Margaret F. Docker, Jason B. Dunham, Ann E. Gray, Jon E. Hess, Jeffrey C. Jolley, Ralph T. Lampman, Brian J. McIlraith, Mary L. Moser, Joshua G. Murauskas, David L. G. Noakes, Howard A. Schaller, Carl B. Schreck, Steven J. Starcevich, Bianca Streif, Stan J. van de Wetering, Joy Wade, Laurie A. Weitkamp, Lance A. Wyss
2017, Fisheries (42) 268-280
The Pacific Lamprey Entosphenus tridentatus, an anadromous fish native to the northern Pacific Ocean and bordering freshwater habitats, has recently experienced steep declines in abundance and range contractions along the West Coast of North America. During the early 1990s, Native American tribes recognized the declining numbers of lamprey and championed their...
Simulation of groundwater flow in the glacial aquifer system of northeastern Wisconsin with variable model complexity
Paul F. Juckem, Brian R. Clark, Daniel T. Feinstein
2017, Scientific Investigations Report 2017-5010
The U.S. Geological Survey, National Water-Quality Assessment seeks to map estimated intrinsic susceptibility of the glacial aquifer system of the conterminous United States. Improved understanding of the hydrogeologic characteristics that explain spatial patterns of intrinsic susceptibility, commonly inferred from estimates of groundwater age distributions, is sought so that methods used...
Analytical validation of a reverse transcriptase droplet digital PCR (RT-ddPCR) for quantitative detection of infectious hematopoietic necrosis virus
Peng Jia, Maureen K. Purcell, Guang Pan, Jinjin Wang, Shifu Kan, Yin Liu, Xiaocong Zheng, Xiujie SHi, Junqiang He, Li Yu, Qunyi Hua, Tikang Lu, Wensheng Lan, James Winton, Ningyi Jin, Hong Liu
2017, Journal of Virological Methods (245) 73-80
Infectious hematopoietic necrosis virus (IHNV) is an important pathogen of salmonid fishes. A validated universal reverse transcriptase quantitative PCR (RT-qPCR) assay that can quantify levels of IHNV in fish tissues has been previously reported. In the present study, we adapted the published set of IHNV primers and probe for use...
Baseline and projected future carbon storage and carbon fluxes in ecosystems of Hawai‘i
Paul C. Selmants, Christian P. Giardina, James D. Jacobi, Zhiliang Zhu, editor(s)
2017, Professional Paper 1834
This assessment was conducted to fulfill the requirements of section 712 of the Energy Independence and Security Act of 2007 and to improve understanding of factors influencing carbon balance in ecosystems of Hawai‘i. Ecosystem carbon storage, carbon fluxes, and carbon balance were examined for major terrestrial ecosystems on the seven...
Evaluation of laser ablation double-focusing SC-ICPMS for “common” lead isotopic measurements in silicate glasses and mineral
Aaron J. Pietruszka, Leonid A. Neymark
2017, Journal of Analytical Atomic Spectrometry (32) 1135-1154
An analytical method for the in situ measurement of “common” Pb isotope ratios in silicate glasses and minerals using a 193-nm excimer laser ablation (LA) system with a double-focusing single-collector (SC)-ICPMS is presented and evaluated as a possible alternative to multiple-collector (MC)-ICPMS. This LA-SC-ICPMS technique employs fast-scanning ion deflectors to...
Eastern Denali Fault surface trace map, eastern Alaska and Yukon, Canada
Adrian M. Bender, Peter J. Haeussler
2017, Open-File Report 2017-1049
We map the 385-kilometer (km) long surface trace of the right-lateral, strike-slip Denali Fault between the Totschunda-Denali Fault intersection in Alaska, United States and the village of Haines Junction, Yukon, Canada. In Alaska, digital elevation models based on light detection and ranging and interferometric synthetic aperture radar data enabled our...
The U.S. Geological Survey Monthly Water Balance Model Futures Portal
Andrew R. Bock, Lauren E. Hay, Steven L. Markstrom, Christopher Emmerich, Marian Talbert
2017, Open-File Report 2016-1212
The U.S. Geological Survey Monthly Water Balance Model Futures Portal (https://my.usgs.gov/mows/) is a user-friendly interface that summarizes monthly historical and simulated future conditions for seven hydrologic and meteorological variables (actual evapotranspiration, potential evapotranspiration, precipitation, runoff, snow water equivalent, atmospheric temperature, and streamflow) at locations across the conterminous United...
Large crater clustering tool
Jason Laura, James A. Skinner Jr., Marc A. Hunter
2017, Computers & Geosciences (105) 81-90
In this paper we present the Large Crater Clustering (LCC) tool set, an ArcGIS plugin that supports the quantitative approximation of a primary impact location from user-identified locations of possible secondary impact craters or the long-axes of clustered secondary craters. The identification of primary impact craters directly supports planetary geologic...
Arsenic and uranium in private wells in Connecticut, 2013-15
Sarah M. Flanagan, Craig J. Brown
2017, Open-File Report 2017-1046
The occurrence of arsenic and uranium in groundwater at concentrations that exceed drinking-water standards is a concern because of the potential adverse effects on human health. Some early studies of arsenic occurrence in groundwater considered anthropogenic causes, but more recent studies have focused on sources of naturally occurring arsenic to...
Designing ecological climate change impact assessments to reflect key climatic drivers
Helen Sofaer, Joseph J. Barsugli, Catherine S. Jarnevich, John T. Abatzoglou, Marian Talbert, Brian W. Miller, Jeffrey T. Morisette
2017, Global Change Biology (23) 2537-2553
Identifying the climatic drivers of an ecological system is a key step in assessing its vulnerability to climate change. The climatic dimensions to which a species or system is most sensitive – such as means or extremes – can guide methodological decisions for projections of ecological impacts and...
Accounting for sampling patterns reverses the relative importance of trade and climate for the global sharing of exotic plants
Helen Sofaer, Catherine S. Jarnevich
2017, Global Ecology and Biogeography (26) 669-678
AimThe distributions of exotic species reflect patterns of human-mediated dispersal, species climatic tolerances and a suite of other biotic and abiotic factors. The relative importance of each of these factors will shape how the spread of exotic species is affected by ongoing economic globalization and climate change. However, patterns of...
How do en route events around the Gulf of Mexico influence landbird populations
Emily B. Cohen, Wylie C. Barrow Jr., Jeffrey J. Buler, Jill L. Deppe, Andrew Farnsworth, Peter P. Marra, Scott R. McWilliams, David W Mehlman, R. Randy Wilson, Mark S Woodrey, Frank R. Moore
2017, The Condor (119) 327-343
Habitats around the Gulf of Mexico (GOM) provide critical resources for Nearctic–Neotropical migratory landbirds, the majority of which travel across or around the GOM every spring and fall as they migrate between temperate breeding grounds in North America and tropical wintering grounds in the Caribbean and Central and South America....
Land change monitoring, assessment, and projection (LCMAP) revolutionizes land cover and land change research
Steven Young
2017, General Information Product 172
When nature and humanity change Earth’s landscapes - through flood or fire, public policy, natural resources management, or economic development - the results are often dramatic and lasting.Wildfires can reshape ecosystems. Hurricanes with names like Sandy or Katrina will howl for days while altering the landscape for years. One growing...
A rapid diagnostic test and mobile "lab in a suitcase" platform for detecting Ceratocystis spp. responsible for Rapid ‘Ōhi‘a Death
Carter T. Atkinson, William Watcher-Weatherwax, Kylle Roy, Wade P Heller, Lisa Keith
2017, Technical Report HCSU-TR082
We describe a field compatible molecular diagnostic test for two new species of Ceratocystis that infect `ōhi`a (Metrosideros polymorpha) and cause the disease commonly known as Rapid `Ōhi`a Death. The diagnostic is based on amplification of a DNA locus within the internal transcribed spacer region that separates fungal 5.8S ribosomal...
Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission
Jeffrey E. Lovich, Shellie R. Puffer
2017, Report
Agassiz’s desert tortoise (Gopherus agassizii) is a conservation-reliant species with populations north and west of the Colorado River protected as threatened under the Endangered Species Act (Averill-Murray et al. 2012). Since it was listed under this category in 1990, a great deal has been learned about the natural history of...
Annual review 2016: Exploration review
Nick A Karl, David R. Wilburn
2017, Mining Engineering (69) 28-49
This summary of international mineral exploration activities for the year 2016 draws upon information from industry sources, published literature, SNL Metals & Mining (SNL), an offering of S&P Global Market Intelligence (New York, NY), and specialists in the U.S. Geological Survey (USGS) National Minerals Information Center. Three types of information...
Tell me a story! A plea for more compelling conference presentations
Kathryn Langin
2017, The Condor: Ornithological Applications (119) 321-326
Effective communication with other scientists is an essential component of the scientific process, underlying success in publishing papers, building collaborations, securing grants and jobs, and stimulating further research. Oral presentations at professional meetings provide an opportunity to share research findings with a relatively broad scientific audience. However, many scientists...
The Partners in Flight handbook on species assessment Version 2017
Arvind O. Panjabi, Peter J. Blancher, Wendy E. Easton, Jessica C. Stanton, Dean W. Demarest, Randy Dettmers, Kenneth V. Rosenberg, Partners in Flight Science Committee
2017, Report
Partners in Flight (PIF) is a cooperative venture of federal, state, provincial, and territorial agencies, industry, non-governmental organizations, researchers, and many others whose common goal is the conservation of North American birds (www.partnersinflight.org). While PIF has focused primarily on landbirds, it works in conjunction with other bird partners to promote...
A paleoseismic transect across the northwestern Basin and Range Province, northwestern Nevada and northeastern California, USA
Stephen Personius, Richard W. Briggs, J. Zebulon Maharrey, Stephen J. Angster, Shannon A. Mahan
2017, Geosphere (13) 782-810
We use new and existing data to compile a record of ∼18 latest Quaternary large-magnitude surface-rupturing earthquakes on 7 fault zones in the northwestern Basin and Range Province of northwestern Nevada and northeastern California. The most recent earthquake on all faults postdates the ca. 18–15 ka last glacial highstand of...
Datasheet: Pseudogymnoascus destructans (white-nose syndrome fungus)
David S. Blehert, Emily W. Lankau
2017, Book chapter, Invasive species compendium
Pseudogymnoascus destructans is a psychrophilic (cold-loving) fungus that causes white-nose syndrome (WNS), an emerging disease of North American bats that has caused unprecedented population declines. The fungus is believed to have been introduced to North America from Europe or Asia (where it is present but does not cause significant mortality),...
Migratory behavior of adult sea lamprey and cumulative passage performance through four fishways
Theodore R. Castro-Santos, Xiaotao Shi, Alexander Haro
2017, Canadian Journal of Fisheries and Aquatic Sciences (5) 790-800
This article describes a study of PIT-tagged sea lamprey (Petromyzon marinus) ascending four fishways comprising three designs at two dams on the Connecticut River, USA. Migration between dams was rapid (median migration rate = 23 km·day−1). Movement through the fishways was much slower, however (median = 0.02–0.33 km·day−1). Overall delay...
Distribution and abundance of Millicoma Dace in the Coos River Basin, Oregon
Paul D. Scheerer, James Peterson, Shaun Clements
2017, Northwestern Naturalist (98) 39-47
The Millicoma Dace Rhinichthys cataractae is a form of Longnose Dace endemic to the Coos River drainage in southwestern Oregon. Sparse species records in the Oregon State University Ichthyology Collection and database and infrequent recent encounters prompted surveys to assess the current status and distribution of the species. In 2014, we surveyed...
Undiscovered porphyry copper resources in the Urals—A probabilistic mineral resource assessment
Jane M. Hammarstrom, Mark J. Mihalasky, Stephen Ludington, Jeffrey Phillips, Byron R. Berger, Paul Denning, Connie Dicken, John C. Mars, Michael L. Zientek, Richard J. Herrington, Reimar Seltmann
2017, Ore Geology Reviews (85) 181-203
A probabilistic mineral resource assessment of metal resources in undiscovered porphyry copper deposits of the Ural Mountains in Russia and Kazakhstan was done using a quantitative form of mineral resource assessment. Permissive tracts were delineated on the basis of mapped and inferred subsurface distributions of igneous rocks assigned to...
Guidelines for preparation of State water-use estimates for 2015
2017, Open-File Report 2017-1029
The U.S. Geological Survey (USGS) has estimated the use of water in the United States at 5-year intervals since 1950. This report describes the water-use categories and data elements used for the national water-use compilation conducted as part of the USGS National Water-Use Science Project. The report identifies sources of...