The basis function approach for modeling autocorrelation in ecological data
Trevor J. Hefley, Kristin M. Broms, Brian M. Brost, Frances E. Buderman, Shannon L. Kay, Henry Scharf, John Tipton, Perry J. Williams, Mevin Hooten
2017, Ecology (98) 632-646
Analyzing ecological data often requires modeling the autocorrelation created by spatial and temporal processes. Many seemingly disparate statistical methods used to account for autocorrelation can be expressed as regression models that include basis functions. Basis functions also enable ecologists to modify a wide range of existing ecological models in order...
Top-down control of invertebrates by Ninespine Stickleback in Arctic ponds
Sarah M. Laske, Amanda E. Rosenberger, William J. Kane, Mark S. Wipfli, Christian E. Zimmerman
2017, Freshwater Science (36) 124-137
Despite their widespread presence in northern-latitude ecosystems, the ecological role of Ninespine Stickleback Pungitius pungitius is not well understood. Ninespine Stickleback can occupy both top and intermediate trophic levels in freshwater ecosystems, so their role in food webs as a predator on invertebrates and as a forage fish for upper level consumers...
Using resilience and resistance concepts to manage persistent threats to sagebrush ecosystems and greater sage-grouse
Jeanne C. Chambers, Jeremy D. Maestas, David A. Pyke, Chad S. Boyd, Mike Pellant, Amarina Wuenschel
2017, Rangeland Ecology and Management (70) 149-164
Conservation of imperiled species often demands addressing a complex suite of threats that undermine species viability. Regulatory approaches, such as the US Endangered Species Act (1973), tend to focus on anthropogenic threats through adoption of policies and regulatory mechanisms. However, persistent ecosystem-based threats, such as invasive species and altered disturbance...
Large earthquakes and creeping faults
Ruth A. Harris
2017, Reviews of Geophysics (55) 169-198
Faults are ubiquitous throughout the Earth's crust. The majority are silent for decades to centuries, until they suddenly rupture and produce earthquakes. With a focus on shallow continental active-tectonic regions, this paper reviews a subset of faults that have a different behavior. These unusual faults slowly creep for long periods...
Evidence for coseismic subsidence events in a southern California coastal saltmarsh
Robert Leeper, Brady P. Rhodes, Matthew E. Kirby, Katherine M. Scharer, Joseph A. Carlin, Eileen Hemphill-Haley, Simona Avnaim-Katav, Glen M. MacDonald, Scott W. Starratt, Angela Aranda
2017, Scientific Reports (7)
Paleoenvironmental records from a southern California coastal saltmarsh reveal evidence for repeated late Holocene coseismic subsidence events. Field analysis of sediment gouge cores established discrete lithostratigraphic units extend across the wetland. Detailed sediment analyses reveal abrupt changes in lithology, percent total organic matter, grain size, and magnetic susceptibility. Microfossil analyses...
Recalibration of the Mars Science Laboratory ChemCam instrument with an expanded geochemical database
Samuel M. Clegg, Roger C. Wiens, Ryan B. Anderson, Olivier Forni, Jens Frydenvang, Jeremie Lasue, Agnes Cousin, Valerie Payre, Tommy Boucher, M. Darby Dyar, Scott M. McLennan, Richard V. Morris, Trevor G. Graff, Stanley A Mertzman, Bethany L. Ehlmann, Ines Belgacem, Horton E. Newsom, Ben C. Clark, Noureddine Melikechi, Alissa Mezzacappa, Rhonda E. McInroy, Ronald Martinez, Patrick J. Gasda, Olivier Gasnault, Sylvestre Maurice
2017, Spectrochimica Acta Part B: Atomic Spectroscopy (129) 64-85
The ChemCam Laser-Induced Breakdown Spectroscopy (LIBS) instrument onboard the Mars Science Laboratory (MSL) rover Curiosity has obtained > 300,000 spectra of rock and soil analysis targets since landing at Gale Crater in 2012, and the spectra represent perhaps the largest publicly-available LIBS datasets. The compositions of the major elements, reported as...
Integrating multiple data sources in species distribution modeling: A framework for data fusion
Krishna Pacifici, Brian J. Reich, David A.W. Miller, Beth Gardner, Glenn E. Stauffer, Susheela Singh, Alexa McKerrow, Jaime A. Collazo
2017, Ecology (98) 840-850
The last decade has seen a dramatic increase in the use of species distribution models (SDMs) to characterize patterns of species’ occurrence and abundance. Efforts to parameterize SDMs often create a tension between the quality and quantity of data available to fit models. Estimation methods that integrate both standardized and...
Geologic controls on submarine slope failure along the central U.S. Atlantic margin: Insights from the Currituck Slide Complex
Jenna C. Hill, Daniel S. Brothers, Bradley K. Craig, Uri S. ten Brink, Jason D. Chaytor, Claudia Flores
2017, Marine Geology (385) 114-130
Multiple styles of failure, ranging from densely spaced, mass transport driven canyons to the large, slab-type slope failure of the Currituck Slide, characterize adjacent sections of the central U.S. Atlantic margin that appear to be defined by variations in geologic framework. Here we use regionally extensive, deep penetration multichannel seismic...
When perception reflects reality: Non-native grass invasion alters small mammal risk landscapes and survival
Joseph P. Ceradnini, Anna D. Chalfoun
2017, Ecology and Evolution (7) 1823-1835
Modification of habitat structure due to invasive plants can alter the risk landscape for wildlife by, for example, changing the quality or availability of refuge habitat. Whether perceived risk corresponds with actual fitness outcomes, however, remains an important open question. We simultaneously measured how habitat changes due to a common...
Effects of CFT Legumine (5% Rotenone) on tadpole survival and metamorphosis of Chiricahua leopard frogs Lithobates chiricahuensis, Northern leopard frogs L. pipiens, and American bullfrogs L. catesbeianus
Guillermo Alvarez, Colleen A. Caldwell, Carter G. Kruse
2017, Transactions of the American Fisheries Society (146) 512-522
Amphibians may experience collateral effects if exposed to CFT Legumine (5% rotenone), a piscicide that is used to remove invasive fish. A series of 48-h static toxicity tests assessed the acute effects of CFT Legumine on multi-aged tadpoles of the federally listed Chiricahua leopard frog Lithobates chiricahuensis, the widespread northern leopard...
Vulnerabilities to climate change of Massachusetts animal species of greatest conservation need
Hector Galbraith, Toni L. Morelli
2017, Report
Over the last decade, the Commonwealth of Massachusetts has addressed the potential and actual impacts of climate change on state flora and fauna. The state’s involvement began in 2007 when, led by the Division of Fisheries and Wildlife (DFW) and assisted by Manomet Center for Con-servation Research, it carried out...
Unusual geologic evidence of coeval seismic shaking and tsunamis shows variability in earthquake size and recurrence in the area of the giant 1960 Chile earthquake
M. Cisternas, E Garrett, Robert L. Wesson, T. Dura, L. L Ely
2017, Marine Geology (385) 101-113
An uncommon coastal sedimentary record combines evidence for seismic shaking and coincident tsunami inundation since AD 1000 in the region of the largest earthquake recorded instrumentally: the giant 1960 southern Chile earthquake (Mw 9.5). The record reveals significant variability in the size and recurrence of megathrust earthquakes and ensuing tsunamis...
Winter 2016, Part B—Coastal oblique aerial photographs collected from Assateague Island, Virginia, to Montauk Point, New York, March 8–9, 2016
Karen L. M. Morgan
2017, Data Series 1030
The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project, conducts baseline and storm-response photography missions to document and understand the changes in the vulnerability of the Nation's coasts to extreme storms. On March 8–9, 2016, the USGS conducted an oblique aerial photographic survey...
Winter 2016, Part A—Coastal oblique aerial photographs collected from the South Carolina/North Carolina border to Assateague Island, Virginia, February 18–19, 2016
Karen L. M. Morgan
2017, Data Series 1029
The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project, conducts baseline and storm-response photography missions to document and understand the changes in the vulnerability of the Nation's coasts to extreme storms. On February 18–19, 2016, the USGS conducted an oblique aerial photographic survey...
Aquatic concentrations of chemical analytes compared to ecotoxicity estimates
Mitchell S. Kostich, Robert W. Flick, Angela L. Batt, Heath E. Mash, J. Scott Boone, Edward T. Furlong, Dana W. Kolpin, Susan T. Glassmeyer
2017, Science of the Total Environment (579) 1649-1657
We describe screening level estimates of potential aquatic toxicity posed by 227 chemical analytes that were measured in 25 ambient water samples collected as part of a joint USGS/USEPA drinking water plant study. Measured concentrations were compared to biological effect concentration (EC) estimates, including USEPA aquatic life criteria, effective plasma...
Contaminants of emerging concern in the Great Lakes Basin: A report on sediment, water, and fish tissue chemistry collected in 2010-2012
Steven J. Choy, Mandy L. Annis, JoAnn Banda, Sarah R. Bowman, Mark E. Brigham, Sarah M. Elliott, Daniel J. Gefell, Mark D. Jankowski, Zachary G. Jorgenson, Kathy Lee, Jeremy N. Moore, William A. Tucker
2017, Biological Technical Publication BTP-R3017-2013
Despite being detected at low levels in surface waters and sediments across the United States, contaminants of emerging concern (CECs) in the Great Lakes Basin are not well characterized in terms of spatial and temporal occurrence. Additionally, although the detrimental effects of exposure to CECs on fish and wildlife have...
Potential concerns with analytical Methods Used for the detection of Batrachochytrium salamandrivorans from archived DNA of amphibian swab samples, Oregon, USA
Deborah D. Iwanowicz, William B. Schill, Deanna H. Olson, M. J. Adams, Christine L. Densmore, Robert S. Cornman, Cynthia R. Adams, Chester Figiel, Chauncey W. Anderson, Andrew R Blaustein, Tara Chestnut
2017, Environmental Entomology (48) 352-355
Taxonomic identification of pollen has historically been accomplished via light microscopy but requires specialized knowledge and reference collections, particularly when identification to lower taxonomic levels is necessary. Recently, next-generation sequencing technology has been used as a cost-effective alternative for identifying bee-collected pollen; however, this novel approach has not been tested...
Preparing future fisheries professionals to make good decisions
Michael E. Colvin, James T. Peterson
2017, Fisheries (41) 473-474
Future fisheries professionals will face decision-making challenges in an increasingly complex field of fisheries management. Though fisheries students are well trained in the use of the scientific method to understand the natural world, they are rarely exposed to structured decision making (SDM) as part of an undergraduate or graduate education....
Trends in the quality of water in New Jersey streams, water years 1971–2011
R. Edward Hickman, Robert M. Hirsch
2017, Scientific Investigations Report 2016-5176
In a study conducted by the U.S. Geological Survey in cooperation with the New Jersey Department of Environmental Protection and the Delaware River Basin Commission, trend tests were conducted on selected water-quality characteristics measured at stations on streams in New Jersey during selected periods over water years 1971‒2011. Tests were...
Water-quality sampling plan for evaluating the distribution of bigheaded carps in the Illinois Waterway
James J. Duncker, Paul J. Terrio
2017, Open-File Report 2017-1019
The two nonnative invasive bigheaded carp species (bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix) that were accidentally released in the 1970s have spread widely into the rivers and waterways of the Mississippi River Basin. First detected in the lower reaches of the Illinois Waterway (IWW, the combined Illinois...
Shifts in microbial community structure and function in surface waters impacted by unconventional oil and gas wastewater revealed by metagenomics
N.L. Fahrenfeld, Hannah Delos Reyes, Alessia Eramo, Denise M. Akob, Adam C. Mumford, Isabelle M. Cozzarelli
2017, Science of the Total Environment 1205-1213
Unconventional oil and gas (UOG) production produces large quantities of wastewater with complex geochemistry and largely uncharacterized impacts on surface waters. In this study, we assessed shifts in microbial community structure and function in sediments and waters upstream and downstream from a UOG wastewater disposal facility. To do this, quantitative...
Geochemistry and hydrology of perched groundwater springs: assessing elevated uranium concentrations at Pigeon Spring relative to nearby Pigeon Mine, Arizona (USA)
Kimberly R. Beisner, Nicholas V. Paretti, Fred D. Tillman, David L. Naftz, Donald J. Bills, Katherine Walton-Day, Tanya J. Gallegos
2017, Hydrogeology Journal (25) 539-556
The processes that affect water chemistry as the water flows from recharge areas through breccia-pipe uranium deposits in the Grand Canyon region of the southwestern United States are not well understood. Pigeon Spring had elevated uranium in 1982 (44 μg/L), compared to other perched springs (2.7–18 μg/L), prior to mining...
Nonnative trout invasions combined with climate change threaten persistence of isolated cutthroat trout populations in the southern Rocky Mountains
James Roberts, Kurt D. Fausch, Mevin Hooten, Douglas P. Peterson
2017, North American Journal of Fisheries Management (37) 314-325
Effective conservation of Cutthroat Trout Oncorhynchus clarkii lineages native to the Rocky Mountains will require estimating effects of multiple stressors and directing management toward the most important ones. Recent analyses have focused on the direct and indirect effects of a changing climate on contemporary ranges, which are much reduced from historic...
Water resources of Iberia Parish, Louisiana
Vincent E. White, Lawrence B. Prakken
2017, Fact Sheet 2016-3100
IntroductionInformation concerning the availability, use, and quality of water in Iberia Parish, Louisiana, is critical for proper water-resource management. This fact sheet summarizes the availability, past and current use, use trends, and water quality from groundwater and surface-water sources in the parish for water managers, parish residents, and others to...
Water resources of Concordia Parish, Louisiana
Vincent E. White
2017, Fact Sheet 2016-3099
IntroductionInformation concerning the availability, use, and quality of water in Concordia Parish, Louisiana, is critical for proper water-supply management. The purpose of this fact sheet is to present information that can be used by water managers, parish residents, and others for stewardship of this vital resource. Information on the availability,...
