Methylmercury degradation and exposure pathways in streams and wetlands impacted by historical mining
Patrick M. Donovan, Joel D. Blum, Michael B. Singer, Mark C. Marvin-DiPasquale, Martin T.K. Tsui
2016, Science of the Total Environment (568) 1192-1203
Monomethyl mercury (MMHg) and total mercury (THg) concentrations and Hg stable isotope ratios (δ202Hg and Δ199Hg) were measured in sediment and aquatic organisms from Cache Creek (California Coast Range) and Yolo Bypass (Sacramento Valley). Cache Creek sediment had a large range in THg (87 to 3870 ng/g) and δ202Hg (−1.69...
End of the chain? Rugosity and fine-scale bathymetry from existing underwater digital imagery using structure-from-motion (SfM) technology
Curt D. Storlazzi, Peter Dartnell, Gerry Hatcher, Ann E. Gibbs
2016, Coral Reefs (35) 889-894
The rugosity or complexity of the seafloor has been shown to be an important ecological parameter for fish, algae, and corals. Historically, rugosity has been measured either using simple and subjective manual methods such as ‘chain-and-tape’ or complicated and expensive geophysical methods. Here, we demonstrate the application of structure-from-motion (SfM)...
Development of a decision support tool for water and resource management using biotic, abiotic, and hydrological assessments of Topock Marsh, Arizona
Christopher Holmquist-Johnson, Leanne Hanson, Joan Daniels, Colin Talbert, Jeanette Haegele
2016, Open-File Report 2016-1065
Topock Marsh is a large wetland adjacent to the Colorado River and the main feature of Havasu National Wildlife Refuge (Havasu NWR) in southern Arizona. In 2010, the U.S. Fish and Wildlife Service (FWS) and Bureau of Reclamation began a project to improve water management capabilities at Topock Marsh and...
Methane and sulfate dynamics in sediments from mangrove-dominated tropical coastal lagoons, Yucatan, Mexico
P. C. Chuang, Megan B. Young, Andrew W. Dale, Laurence G. Miller, Jorge A. Herrera-Silveira, Adina Paytan
2016, Biogeosciences (13) 2981-3001
Porewater profiles in sediment cores from mangrove-dominated coastal lagoons (Celestún and Chelem) on the Yucatán Peninsula, Mexico, reveal the widespread coexistence of dissolved methane and sulfate. This observation is interesting since dissolved methane in porewaters is typically oxidized anaerobically by sulfate. To explain the observations we used a numerical transport-reaction...
Sediment data collected in 2014 from Barnegat Bay, New Jersey
Julie Bernier, Chelsea Stalk, Kyle W. Kelso, Jennifer L. Miselis, Rob Tunstead
2016, Data Series 985
In response to the 2010 Governor’s Action Plan to clean up the Barnegat Bay–Little Egg Harbor (BBLEH) estuary in New Jersey, the U.S. Geological Survey (USGS) partnered with the New Jersey Department of Environmental Protection in 2011 to begin a multidisciplinary research project to understand the physical controls on water...
Presence of rapidly degrading permafrost plateaus in south-central Alaska
Benjamin M. Jones, Carson Baughman, Vladimir E. Romanovsky, Andrew D. Parsekian, Esther Babcock, Eva Stephani, Miriam C. Jones, Guido Grosse, Edward E Berg
2016, The Cryosphere (10) 2673-2692
Permafrost presence is determined by a complex interaction of climatic, topographic, and ecological conditions operating over long time scales. In particular, vegetation and organic layer characteristics may act to protect permafrost in regions with a mean annual air temperature (MAAT) above 0 °C. In this study, we document the presence of residual...
Diet and macronutrient optimization in wild ursids: A comparison of grizzly bears with sympatric and allopatric black bears
Cecily M. Costello, Steven L. Cain, Shannon R Pils, Leslie Frattaroli, Mark A. Haroldson, Frank T. van Manen
2016, PLoS ONE (11) 1-22
When fed ad libitum, ursids can maximize mass gain by selecting mixed diets wherein protein provides 17 ± 4% of digestible energy, relative to carbohydrates or lipids. In the wild, this ability is likely constrained by seasonal food availability, limits of intake rate as body size increases, and competition. By...
Persistence and microbial source tracking of Escherichia coli at a swimming beach at Lake of the Ozarks State Park, Missouri
Jordan L. Wilson, John G. Schumacher, Joel G. Burken
2016, Journal of the American Water Resources Association (52) 508-522
The Missouri Department of Natural Resources (MDNR) has closed or posted advisories at public beaches at Lake of the Ozarks State Park in Missouri because of Escherichia coli (E. coli) concentration exceedances in recent years. Spatial and temporal patterns of E. coliconcentrations, microbial source tracking, novel sampling techniques, and beach-use patterns were studied during the...
Algorithms used in the Airborne Lidar Processing System (ALPS)
David B. Nagle, C. Wayne Wright
2016, Open-File Report 2016-1046
The Airborne Lidar Processing System (ALPS) analyzes Experimental Advanced Airborne Research Lidar (EAARL) data—digitized laser-return waveforms, position, and attitude data—to derive point clouds of target surfaces. A full-waveform airborne lidar system, the EAARL seamlessly and simultaneously collects mixed environment data, including submerged, sub-aerial bare earth, and vegetation-covered topographies.ALPS uses three...
Component greenhouse gas fluxes and radiative balance from two deltaic marshes in Louisiana: Pairing chamber techniques and eddy covariance
Ken W. Krauss, Guerry O. Holm, Brian C. Perez, David E. McWhorter, Nicole Cormier, Rebecca Moss, Darren Johnson, Scott C Neubauer, Richard C Raynie
2016, Journal of Geophysical Research: Biogeosciences (121) 1503-1521
Coastal marshes take up atmospheric CO2 while emitting CO2, CH4, and N2O. This ability to sequester carbon (C) is much greater for wetlands on a per-area basis than from most ecosystems, facilitating scientific, political, and economic interest in their value as greenhouse gas sinks. However, the greenhouse gas balance of Gulf...
Accounting for adaptive capacity and uncertainty in assessments of species’ climate-change vulnerability
Alisa A. Wade, Brian K. Hand, Ryan Kovach, Gordon Luikart, Diane Whited, Clint C. Muhlfeld
2016, Conservation Biology (31) 136-149
Climate change vulnerability assessments (CCVAs) are valuable tools for assessing species’ vulnerability to climatic changes, yet failure to include measures of adaptive capacity and to account for sources of uncertainty may limit their effectiveness. Here, we provide a more comprehensive CCVA approach that incorporates all three elements used for assessing...
Late Holocene volcanism at Medicine Lake Volcano, northern California Cascades
Julie M. Donnelly-Nolan, Duane E. Champion, Timothy L. Grove
2016, Professional Paper 1822
Late Holocene volcanism at Medicine Lake volcano in the southern Cascades arc exhibited widespread and compositionally diverse magmatism ranging from basalt to rhyolite. Nine well-characterized eruptions have taken place at this very large rear-arc volcano since 5,200 years ago, an eruptive frequency greater than nearly all other Cascade volcanoes....
Biological soil crusts: An organizing principle in dryland ecosystems (aka: the role of biocrusts in arid land hydrology)
Sonia Chamizo, Jayne Belnap, David J Elridge, Oumarou M Issa
2016, Book chapter, Ecological studies
Biocrusts exert a strong influence on hydrological processes in drylands by modifying numerous soil properties that affect water retention and movement in soils. Yet, their role in these processes is not clearly understood due to the large number of factors that act simultaneously and can mask the biocrust effect. The...
Patterns and controls on nitrogen cycling of biological soil crusts
Nichole N. Barger, Eli Zaady, Bettina Weber, Ferran Garcia-Pichel, Jayne Belnap
2016, Book chapter
Biocrusts play a significant role in the nitrogen [N ] cycle within arid and semi-arid ecosystems, as they contribute major N inputs via biological fixation and dust capture, harbor internal N transformation processes, and direct N losses via N dissolved, gaseous and erosional loss processes (Fig. 1). Because soil...
Biocrusts in the context of global change
Sasha C. Reed, Fernando T. Maestre, Raul Ochoa-Hueso, Cheryl Kuske, Anthony N. Darrouzet-Nardi, Brian Darby, Bob Sinsabaugh, Mel Oliver, Leo Sancho, Jayne Belnap
2016, Book chapter, Biological soil crusts: An organizing principle in drylands
A wide range of studies show global environmental change will profoundly affect the structure, function, and dynamics of terrestrial ecosystems. The research synthesized here underscores that biocrust communities are also likely to respond significantly to global change drivers, with a large potential for modification to their abundance, composition, and function....
How biological soil crusts became recognized as a functional unit: a selective history
Otto L. Lange, Jayne Belnap
2016, Book chapter
It is surprising that despite the world-wide distribution and general importance of biological soil crusts (biocrusts), scientific recognition and functional analysis of these communities is a relatively young field of science. In this chapter, we sketch the historical lines that led to the recognition of biocrusts as a community with...
Synthesis on biological soil crust research
Bettina Weber, Jayne Belnap, Burkhard Buedel
2016, Book chapter, Ecological studies
In this closing chapter, we summarize the advances in biocrust research made during the last 1.5 decades. In the first part of the chapter, we discuss how in some research fields, such as the microbial diversity of fungi, bacteria, and microfauna; the interaction between biocrusts and vascular plants; and in...
Carbon budgets of biological soil crusts at micro-, meso-, and global scales
Leopoldo G Sancho, Jayne Belnap, Claudia Colesie, Jose Raggio, Bettina Weber
2016, Book chapter, Ecological studies
The importance of biocrusts in the ecology of arid lands across all continents is widely recognized. In spite of this broad distribution, contributions of biocrusts to the global biogeochemical cycles have only recently been considered. While these studies opened a new view on the global role of biocrusts, they also...
Spatially explicit modeling of annual and seasonal habitat for greater sage-grouse (Centrocercus urophasianus) in Nevada and Northeastern California—An updated decision-support tool for management
Peter S. Coates, Michael L. Casazza, Brianne E. Brussee, Mark A. Ricca, K. Benjamin Gustafson, Erika Sanchez-Chopitea, Kimberly Mauch, Lara Niell, Scott Gardner, Shawn Espinosa, David J. Delehanty
2016, Open-File Report 2016-1080
Successful adaptive management hinges largely upon integrating new and improved sources of information as they become available. As a timely example of this tenet, we updated a management decision support tool that was previously developed for greater sage-grouse (Centrocercus urophasianus, hereinafter referred to as “sage-grouse”) populations in Nevada and California....
Proceedings of the 12th Biennial Conference of research on the Colorado Plateau
Barbara E. Ralston, editor(s)
2016, Scientific Investigations Report 2015-5180
Introduction The Colorado Plateau is a physiographic region that encompasses 330,000 square kilometers in parts of four states in the southwestern United States (Colorado, Utah, New Mexico, and Arizona). Known for its high deserts, the Colorado Plateau also includes isolated mountains, high plateaus, and rugged canyons. Not only is the region...
Interdrainage morphological and genetic differentiation in the Escambia Map Turtle, Graptemys ernsti
Joshua R. Ennen, James Godwin, Jeffrey E. Lovich, Brian R. Kreiser, Brian Folt, Sarah Hazard
2016, Herpetological Conservation and Biology (11) 122-131
Graptemys ernsti, the Escambia Map Turtle, inhabits the Escambia/Conecuh River, the adjacent Yellow River, and the Pea River further to the east, all of which have been distinct drainage systems since the Pleistocene. We used continuous and meristic morphological and genetic data to compare populations of G. ernsti and found...
Waterfowl endozoochory: An overlooked long-distance dispersal mode for Cuscuta (dodder)
Mihai Costea, Sasa Stefanovic, Miguel A. Garcia, Susan De La Cruz, Michael L. Casazza, Andy J. Green
2016, American Journal of Botany (103) 957-962
REMISE OF THE STUDY: Dispersal of parasitic Cuscuta species (dodders) worldwide has been assumed to be largely anthropomorphic because their seeds do not match any previously known dispersal syndrome and no natural dispersal vectors have been reliably documented. However, the genus has a subcosmopolitan distribution and recent phylogeographic results have...
A possible transoceanic tsunami directed toward the U.S. west coast from the Semidi segment, Alaska convergent margin
Roland E. von Huene, John J. Miller, Peter Dartnell
2016, Geochemistry, Geophysics, Geosystems (17) 645-659
The Semidi segment of the Alaska convergent margin appears capable of generating a giant tsunami like the one produced along the nearby Unimak segment in 1946. Reprocessed legacy seismic reflection data and a compilation of multibeam bathymetric surveys reveal structures that could generate such a tsunami. A 200 km long...
Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock
Pauline L. Kamath, Jeffrey T. Foster, Kevin P. Drees, Gordon Luikart, Christine Quance, Neil J. Anderson, P. Ryan Clarke, Eric K. Cole, Mark L. Drew, William H. Edwards, Jack C. Rhyan, John J. Treanor, Rick L. Wallen, Patrick J. White, Suelee Robbe-Austerman, Paul C. Cross
2016, Nature Communications (7)
Whole-genome sequencing has provided fundamental insights into infectious disease epidemiology, but has rarely been used for examining transmission dynamics of a bacterial pathogen in wildlife. In the Greater Yellowstone Ecosystem (GYE), outbreaks of brucellosis have increased in cattle along with rising seroprevalence in elk. Here we use a genomic approach...
Toward improved simulation of river operations through integration with a hydrologic model
Eric D. Morway, Richard G. Niswonger, Enrique Triana
2016, Environmental Modelling and Software 255-274
Advanced modeling tools are needed for informed water resources planning and management. Two classes of modeling tools are often used to this end–(1) distributed-parameter hydrologic models for quantifying supply and (2) river-operation models for sorting out demands under rule-based systems such as the prior-appropriation doctrine. Within each of these two...