Biogenic coal-to-methane conversion efficiency decreases after repeated organic amendment
Katherine J. Davis, Elliott P. Barnhart, Matthew W. Fields, Robin Gerlach
2018, Energy & Fuels (32) 2916-2925
Addition of organic amendments to coal-containing systems can increase the rate and extent of biogenic methane production for 60–80 days before production slows or stops. Understanding the effect of repeated amendment additions on the rate and extent of enhanced coal-dependent methane production is important if biological coal-to-methane conversion is to...
Environmental and ecological conditions at Arctic breeding sites have limited effects on true survival rates of adult shorebirds
Emily L. Weiser, Richard B. Lanctot, Stephen C. Brown, H. River Gates, Rebecca L. Bentzen, Joel Bety, Megan L. Boldenow, Willow B. English, Samantha E. Franks, Laura Koloski, Eunbi Kwon, Jean-François Lamarre, David B. Lank, Joseph R. Liebezeit, Laura McKinnon, Erica Nol, Jennie Rausch, Sarah T. Saalfeld, Nathan R. Senner, David H. Ward, Paul F. Wood, Brett K. Sandercock
2018, The Auk (135) 29-43
Many Arctic shorebird populations are declining, and quantifying adult survival and the effects of anthropogenic factors is a crucial step toward a better understanding of population dynamics. We used a recently developed, spatially explicit Cormack–Jolly–Seber model in a Bayesian framework to obtain broad-scale estimates of true annual survival rates for...
Equilibrium and non-equilibrium controls on the abundances of clumped isotopologues of methane during thermogenic formation in laboratory experiments: Implications for the chemistry of pyrolysis and the origins of natural gases
Yanhua Shuai, Peter M.J. Douglas, Shuichang Zhang, Daniel A. Stolper, Geoffrey S. Ellis, Michael Lawson, Michael Lewan, Michael Formolo, Jingkui Mi, Kun He, Guoyi Hu, John M. Eiler
2018, Geochimica et Cosmochimica Acta (223) 159-174
Multiply isotopically substituted molecules (‘clumped’ isotopologues) can be used as geothermometers because their proportions at isotopic equilibrium relative to a random distribution of isotopes amongst all isotopologues are functions of temperature. This has allowed measurements of clumped-isotope abundances to be used to constrain formation temperatures of several natural materials. However,...
Are ranger patrols effective in reducing poaching-related threats within protected areas?
Jennnifer F. Moore, Felix Mulindahabi, Michel K. Masozera, James D. Nichols, James E. Hines, Ezechiel Turikunkiko, Madan K. Oli
2018, Journal of Applied Ecology (55) 99-107
Poaching is one of the greatest threats to wildlife conservation world-wide. However, the spatial and temporal patterns of poaching activities within protected areas, and the effectiveness of ranger patrols and ranger posts in mitigating these threats, are relatively unknown.We used 10 years (2006–2015) of ranger-based monitoring data and...
Numerical modeling of salt marsh morphological change induced by Hurricane Sandy
Kelin Hu, Q. Chen, Hongqing Wang, Ellen K. Hartig, Philip M. Orton
2018, Coastal Engineering (132) 63-81
The salt marshes of Jamaica Bay serve as a recreational outlet for New York City residents, mitigate wave impacts during coastal storms, and provide habitat for critical wildlife species. Hurricanes have been recognized as one of the critical drivers of coastal wetland morphology due to their effects on hydrodynamics and...
Oak habitat recovery on California's largest islands: Scenarios for the role of corvid seed dispersal
Mario B. Pesendorfer, Christopher M. Baker, Martin Stringer, Eve McDonald-Madden, Michael Bode, Kathryn McEachern, Scott A. Morrison, T. Scott Sillett
2018, Journal of Applied Ecology (55) 1185-1194
Seed dispersal by birds is central to the passive restoration of many tree communities. Reintroduction of extinct seed dispersers can therefore restore degraded forests and woodlands. To test this, we constructed a spatially explicit simulation model, parameterized with field data, to consider the effect of different seed...
Dual-phase mass balance modeling of small mineral particle losses from sedimentary rock-derived soils
Carleton R. Bern, Tiffany Yesavage
2018, Chemical Geology (476) 441-455
Losses of small mineral particles can be a significant physical process that affects the elemental composition of soils derived from sedimentary rocks. Shales, in particular, contain abundant clay-sized minerals that can be mobilized by simple disaggregation, and solutional weathering is limited because the parent rock is composed primarily of recalcitrant minerals...
Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish
Jonathan Q. Richmond, Adam R. Backlin, Carey Galst-Cavalcante, John W. O’Brien, Robert N. Fisher
2018, Molecular Ecology (27) 369-386
Life history adaptations and spatial configuration of metapopulation networks allow certain species to persist in extreme fluctuating environments, yet long-term stability within these systems relies on the maintenance of linkage habitat. Degradation of such linkages in urban riverscapes can disrupt this dynamic in aquatic species, leading to increased extinction debt...
Estimating the per-capita contribution of habitats and pathways in a migratory network: A modelling approach
Ruscena Wiederholt, Brady J. Mattsson, Wayne E. Thogmartin, Michael C. Runge, Jay E. Diffendorfer, Richard A. Erickson, Paula Federico, Laura Lopez-Hoffman, John Fryxell, D. Ryan Norris, Christine Sample
2018, Ecography (41) 815-824
Every year, migratory species undertake seasonal movements along different pathways between discrete regions and habitats. The ability to assess the relative demographic contributions of these different habitats and pathways to the species’ overall population dynamics is critical for understanding the ecology of migratory species, and also has practical applications for...
Occurrence of dichloroacetamide herbicide safeners and co-applied herbicides in midwestern U.S. streams
Emily E. Woodward, Michelle L. Hladik, Dana W. Kolpin
2018, Environmental Science & Technology Letters (5) 3-8
Dichloroacetamide safeners (e.g., AD-67, benoxacor, dichlormid, and furilazole) are co-applied with chloroacetanilide herbicides to protect crops from herbicide toxicity. While such safeners have been used since the early 1970s, there are minimal data about safener usage, occurrence in streams, or potential ecological effects. This study focused on one of these...
Varve formation during the past three centuries in three large proglacial lakes in south-central Alaska
Evelin Boes, Maarten Van Daele, Jasper Moernaut, Sabine Schmidt, Britta J.L. Jensen, Nore Praet, Darrell Kaufman, Peter J. Haeussler, Michael G. Loso, Marc De Batist
2018, Geological Society of America Bulletin (130) 757-774
The sediments stored in the large, deep proglacial lakes of south-central Alaska are largely unstudied. We analyzed sediments in 20 cores, up to 160 cm long, from Eklutna, Kenai, and Skilak Lakes, using a combination of repeated lamination counting, radionuclide dating, event stratigraphy, and tephrochronology. We show that the characteristically...
The Station Information System (SIS): A centralized seismic station repository for populating, managing, and distributing metadata
Ellen Yu, Prabha Acharya, Justin Jaramillo, Sue Kientz, Valerie I. Thomas, Egill Hauksson
2018, Seismological Research Letters (89) 47-55
Creating, maintaining, and archiving accurate station metadata is critical for successful seismic network operations, data discovery, and research. The Station Information System (SIS) is a centralized repository of seismic station equipment inventory, instrument response, and site information of stations operated by regional seismic networks (RSNs) of the Advanced National Seismic...
A Holocene record of ocean productivity and upwelling from the northern California continental slope
Jason A. Addison, John A. Barron, Bruce P. Finney, Jennifer E. Kusler, David Bukry, Linda E. Heusser, Clark R. Alexander
2018, Quaternary International (469) 96-108
The Holocene upwelling history of the northern California continental slope is examined using the high-resolution record of TN062-O550 (40.9°N, 124.6°W, 550 m water depth). This 7-m-long marine sediment core spans the last ∼7500 years, and we use it to test the hypothesis that marine productivity in the California Current System (CCS)...
Characterizing uncertainty in daily streamflow estimates at ungauged locations for the Massachusetts sustainable yield estimator
William H. Farmer, Sara B. Levin
2018, Journal of the American Water Resources Association (54) 198-210
Hydrologic characterization at ungauged locations is one of the quintessential challenges of hydrology. Beyond simulation of historical streamflows, it is similarly important to characterize the level of uncertainty in hydrologic estimates. In tandem with updates to Massachusetts Sustainable Yield Estimator, this work explores the application of...
Estimating disperser abundance using open population models that incorporate data from continuous detection PIT arrays
Maria C. Dzul, Charles B. Yackulic, Josh Korman
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 1393-1404
Autonomous passive integrated transponder (PIT) tag antenna systems continuously detect individually marked organisms at one or more fixed points over long time periods. Estimating abundance using data from autonomous antennae can be challenging, because these systems do not detect unmarked individuals. Here we pair PIT antennae data from a tributary...
Wanted dead or alive: A state-space mark-recapture-recovery model incorporating multiple recovery types and state uncertainty
Nathan J. Hostetter, Beth Gardner, Allen F. Evans, Bradley M. Cramer, Quinn Payton, Ken Collis, Daniel D. Roby
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 1117-1127
We developed a state-space mark-recapture-recovery model that incorporates multiple recovery types and state uncertainty to estimate survival of an anadromous fish species. We apply the model to a dataset of out-migrating juvenile steelhead trout (Oncorhynchus mykiss) tagged with passive integrated transponders, recaptured during outmigration, and recovered on bird colonies in...
Position-specific 13C distributions within propane from experiments and natural gas samples
Alison Piasecki, Alex L. Sessions, Michael Lawson, A.A. Ferreira, E. V. Santos Neto, Geoffrey S. Ellis, Michael Lewan, J.M. Eilers
2018, Geochimica et Cosmochimica Acta (220) 110-124
Site-specific carbon isotope measurements of organic compounds potentially recover information that is lost in a conventional, ‘bulk’ isotopic analysis. Such measurements are useful because isotopically fractionating processes may have distinct effects at different molecular sites, and thermodynamically equilibrated populations of molecules tend to concentrate heavy isotopes in one molecular site...
Quantitative tools for implementing the new definition of significant portion of the range in the U.S. Endangered Species Act
Julia E. Earl, Samuel Nicol, Ruscena Wiederholt, Jay E. Diffendorfer, Darius J. Semmens, D. T. Tyler Flockhart, Brady Mattsson, Gary McCracken, D. Ryan Norris, Wayne E. Thogmartin, Laura Lopez-Hoffman
2018, Conservation Biology (32) 35-49
In 2014, the Fish and Wildlife Service (FWS) and National Marine Fisheries Service announced a new policy interpretation for the U.S. Endangered Species Act (ESA). According to the act, a species must be listed as threatened or endangered if it is determined to be threatened or endangered in a significant...
Geochemical and Pb isotopic characterization of soil, groundwater, human hair, and corn samples from the Domizio Flegreo and Agro Aversano area (Campania region, Italy)
Carmela Rezza, Stefano Albanese, Robert A. Ayuso, Annamaria Lima, Jaana Sorvari, Benedetto De Vivo
2018, Journal of Geochemical Exploration (184) 318-332
A geochemical survey was carried out to investigate metal contamination in the Domizio Littoral and Agro Aversano area (Southern Italy) by means of soil, groundwater, human hair and corn samples. Pb isotope ratios were also determined to identify the sources of metals. Specifically, the investigation focused on topsoils (n = 1064),...
At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)
Paul M. Oliver, Scott L Travers, Jonathan Q. Richmond, Patrick Pikacha, Robert N. Fisher
2018, Zoological Journal of the Linnean Society (182) 681-694
The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos (Cyrtodactylus) occur in...
Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor
Steven T. Kessel, Darryl W. Hondorp, Christopher M. Holbrook, James C. Boase, Justin A. Chiotti, Michael V. Thomas, Todd C. Wills, Edward F. Roseman, Richard Drouin, Charles C. Krueger
2018, Journal of Animal Ecology (87) 259-273
Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or temporally-distributed...
Tagging effects of passive integrated transponder and visual implant elastomer on the small-bodied white sands pupfish (Cyprinodon tularosa)
Damon Peterson, Randi B. Trantham, Tulley G. Trantham, Colleen A. Caldwell
2018, Fisheries Research (198) 203-208
One of the greatest limiting factors of studies designed to obtain growth, movement, and survival in small-bodied fishes is the selection of a viable tag. The tag must be relatively small with respect to body size as to impart minimal sub-lethal effects on growth and mobility, as well as be...
States and rates: Complementary approaches to developing flow‐ecology relationships
Kit Wheeler, Seth J. Wenger, Mary Freeman
2018, Freshwater Biology (63) 906-916
In recognition of the influence of flow on riverine habitats and organisms, stream ecologists have devoted considerable effort to the development of quantitative predictive relationships describing ecological responses to flow variability, i.e. flow‐ecology relationships.Methods used to generate flow‐ecology relationships can be thought of as a continuum bookended by pure...
Semi-quantitative assessment of disease risks at the human, livestock, wildlife interface for the Republic of Korea using a nationwide survey of experts: A model for other countries
Jusun Hwang, Kyunglee Lee, Daniel P. Walsh, SangWha Kim, Jonathan M. Sleeman, Hang Lee
2018, Transboundary and Emerging Diseases (65) e155-e164
Wildlife-associated diseases and pathogens have increased in importance; however, management of a large number of diseases and diversity of hosts is prohibitively expensive. Thus, the determination of priority wildlife pathogens and risk factors for disease emergence is warranted. We used an online questionnaire survey to assess release and exposure risks,...
Comparison of four modeling tools for the prediction of potential distribution for non-indigenous weeds in the United States
Roger Magarey, Leslie Newton, Seung C. Hong, Yu Takeuchi, Dave Christie, Catherine S. Jarnevich, Lisa Kohl, Martin Damus, Steven I. Higgins, Leah Miller, Karen Castro, Amanda M. West, John Hastings, Gericke Cook, John Kartesz, Anthony Koop
2018, Biological Invasions (20) 679-694
This study compares four models for predicting the potential distribution of non-indigenous weed species in the conterminous U.S. The comparison focused on evaluating modeling tools and protocols as currently used for weed risk assessment or for predicting the potential distribution of invasive weeds. We used six weed species (three highly...