Inhibition of an aquatic rhabdovirus demonstrates promise of a broad-spectrum antiviral for use in aquaculture
Bethany F. Balmer, Rachel L. Powers, Ting-Hu Zhang, Jihye Lee, Frederic Vigant, Benhur Lee, Michael E. Jung, Maureen K. Purcell, Kevin Snekvik, Hector C. Aguilar
2017, Journal of Virology (91)
Many enveloped viruses cause devastating disease in aquaculture, resulting in significant economic impact. LJ001 is a broad-spectrum antiviral compound that inhibits enveloped virus infections by specifically targeting phospholipids in the lipid bilayer via the production of singlet oxygen (1O2). This stabilizes positive curvature and decreases membrane fluidity, which inhibits virus-cell...
Book review: Karst without boundaries
Daniel H. Doctor
2017, Groundwater (54) 6-7
No abstract available....
The Chief Joseph Hatchery Program 2014 Annual Report
Andrea Pearl, Matthew Laramie, Casey Baldwin, John Rohrback, Pat Phillips
2017, Report
The Chief Joseph Hatchery Program is comprised of both operations and maintenance of the Chief Joseph Hatchery, located near Bridgeport, Washington and the monitoring and evaluation of natural- and hatchery-origin Chinook salmon in the Okanogan Subbasin. In 2014, the Chief Joseph Hatchery released 44,267 yearling and 186,050 subyearling integrated Chinook...
Ca isotopic geochemistry of an Antarctic aquatic system
W. Berry Lyons, Thomas D. Bullen, Kathleen A. Welch
2017, Geophysical Research Letters (44) 882-891
The McMurdo Dry Valleys, Antarctica, are a polar desert ecosystem. The hydrologic system of the dry valleys is linked to climate with ephemeral streams that flow from glacial melt during the austral summer. Past climate variations have strongly influenced the closed-basin, chemically stratified lakes on the valley floor. Results of...
An integrated data model to estimate spatiotemporal occupancy, abundance, and colonization dynamics
Perry J. Williams, Mevin Hooten, Jamie N. Womble, George G. Esslinger, Michael R. Bower, Trevor J. Hefley
2017, Ecology (98) 328-336
Ecological invasions and colonizations occur dynamically through space and time. Estimating the distribution and abundance of colonizing species is critical for efficient management or conservation. We describe a statistical framework for simultaneously estimating spatiotemporal occupancy and abundance dynamics of a colonizing species. Our method accounts for several issues that are...
Evaluating simplistic methods to understand current distributions and forecast distribution changes under climate change scenarios: An example with coypu (Myocastor coypus)
Catherine S. Jarnevich, Nicholas E. Young, Trevor R. Sheffels, Jacoby Carter, Mark D. Systma, Colin Talbert
2017, NeoBiota (32) 107-125
Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu...
Multi-year microbial source tracking study characterizing fecal contamination in an urban watershed
Rebecca N. Bushon, Amie M.G. Brady, Eric D. Christensen, Erin A. Stelzer
2017, Water Environment Research (89) 127-143
Microbiological and hydrological data were used to rank tributary stream contributions of bacteria to the Little Blue River in Independence, Missouri. Concentrations, loadings and yields of E. coli and microbial source tracking (MST) markers, were characterized during base flow and storm events in five subbasins within Independence, as well as...
Modeled ecohydrological responses to climate change at seven small watersheds in the northeastern United States
Afshin Pourmokhtarian, Charles T. Driscoll, John L. Campbell, Katharine Hayhoe, Anne M. K. Stoner, Mary Beth Adams, Douglas A. Burns, Ivan Fernandez, Myron J. Mitchell, James B. Shanley
2017, Global Change Biology (23) 840-856
A cross-site analysis was conducted on seven diverse, forested watersheds in the northeastern United States to evaluate hydrological responses (evapotranspiration, soil moisture, seasonal and annual streamflow, and water stress) to projections of future climate. We used output from four atmosphere–ocean general circulation models (AOGCMs; CCSM4, HadGEM2-CC, MIROC5, and MRI-CGCM3) included...
Development and utilization of USGS ShakeCast for rapid post-earthquake assessment of critical facilities and infrastructure
David J. Wald, Kuo-wan Lin, C. A. Kircher, Kishor S. Jaiswal, Nico Luco, L. Turner, Daniel Slosky
2017, Conference Paper, Proceedings of the 16th World Conference on Earthquake Engineering
The ShakeCast system is an openly available, near real-time post-earthquake information management system. ShakeCast is widely used by public and private emergency planners and responders, lifeline utility operators and transportation engineers to automatically receive and process ShakeMap products for situational awareness, inspection priority, or damage assessment of their own infrastructure...
Ground motion in the presence of complex Topography II: Earthquake sources and 3D simulations
Stephen H. Hartzell, Leonardo Ramirez-Guzman, Mark Meremonte, Alena L. Leeds
2017, Bulletin of the Seismological Society of America (107) 344-358
Eight seismic stations were placed in a linear array with a topographic relief of 222 m over Mission Peak in the east San Francisco Bay region for a period of one year to study topographic effects. Seventy‐two well‐recorded local earthquakes are used to calculate spectral amplitude ratios relative to a reference...
Prior knowledge-based approach for associating contaminants with biological effects: A case study in the St. Croix River basin, MN, WI, USA
Anthony L. Schroeder, Dalma Martinovic-Weigelt, Gerald T. Ankley, Kathy Lee, Natalia Garcia-Reyero, Edward J. Perkins, Heiko L. Schoenfuss, Daniel L. Villeneuve
2017, Environmental Pollution (221) 427-436
Evaluating potential adverse effects of complex chemical mixtures in the environment is challenging. One way to address that challenge is through more integrated analysis of chemical monitoring and biological effects data. In the present study, water samples from five locations near two municipal wastewater treatment plants in the St. Croix...
Using diurnal temperature signals to infer vertical groundwater-surface water exchange
Dylan J. Irvine, Martin A. Briggs, Laura K. Lautz, Ryan P. Gordon, Jeffrey M. McKenzie, Ian Cartwright
2017, Groundwater (55) 10-26
Heat is a powerful tracer to quantify fluid exchange between surface water and groundwater. Temperature time series can be used to estimate pore water fluid flux, and techniques can be employed to extend these estimates to produce detailed plan-view flux maps. Key advantages of heat tracing include cost-effective sensors and...
Oxygen isotope geochemistry of mafic phenocrysts in primitive mafic lavas from the southernmost Cascade Range, California
Sandra J. Underwood, Michael A. Clynne
2017, American Mineralogist (102) 251-261
Previously reported whole-rock δ18O values (5.6–7.8‰) for primitive quaternary mafic lavas from the southernmost Cascades (SMC) are often elevated (up to 1‰) relative to δ18O values expected for mafic magmas in equilibrium with mantle peridotite. Olivine, clinopyroxene, and plagioclase crystals were separated from 29 geochemically well-characterized mafic lavas for δ18O...
Quarterly wildlife mortality report January 2017
Bryan J. Richards, Daniel A. Grear, Anne Ballmann, Robert J. Dusek, Barbara Bodenstein
2017, Wildlife Disease Association Newsletter
No abstract available....
Is “morphodynamic equilibrium” an oxymoron?
Zeng Zhou, Giovanni Coco, Ian Townend, Maitane Olabarrieta, Mick van der Wegen, Zheng Gong, Andrea D’Alpaos, Shu Gao, Bruce E. Jaffe, Guy R. Gelfenbaum, Qing He, Yaping Wang, Stefano Lanzoni, Zhengbing Wang, Han Winterwerp, Changkuan Zhang
2017, Earth-Science Reviews (165) 257-267
Morphodynamic equilibrium is a widely adopted yet elusive concept in the field of geomorphology of coasts, rivers and estuaries. Based on the Exner equation, an expression of mass conservation of sediment, we distinguish three types of equilibrium defined as static and dynamic, of which two different types exist. Other expressions...
Predicting animal home-range structure and transitions using a multistate Ornstein-Uhlenbeck biased random walk
Greg A. Breed, Emily A. Golson, M. Tim Tinker
2017, Ecology (98) 32-47
The home‐range concept is central in animal ecology and behavior, and numerous mechanistic models have been developed to understand home range formation and maintenance. These mechanistic models usually assume a single, contiguous home range. Here we describe and implement a simple home‐range model that can accommodate multiple...
Assessing conditions influencing the longitudinal distribution of exotic brown trout (Salmo trutta) in a mountain stream: a spatially-explicit modeling approach
Christy S. Meredith, Phaedra E. Budy, Mevin Hooten, Marcos Oliveira Prates
2017, Biological Invasions (19) 503-519
Trout species often segregate along elevational gradients, yet the mechanisms driving this pattern are not fully understood. On the Logan River, Utah, USA, exotic brown trout (Salmo trutta) dominate at low elevations but are near-absent from high elevations with native Bonneville cutthroat trout (Onchorhynchus clarkii utah)....
Nonbreeding isolation and population-specific migration patterns among three populations of Golden-winged Warblers
Gunnar R. Kramer, Henry M. Streby, Sean M. Peterson, Justin A. Lehman, David A. Buehler, Petra B. Wood, Darin J. McNeil Jr., Jeffrey L. Larkin, David E. Andersen
2017, Condor (119) 108-121
Golden-winged Warblers (Vermivora chrysoptera) are Nearctic–Neotropical migrants experiencing varied regional population trends not fully explained by breeding-grounds factors such as nest success. A lack of detailed information on the nonbreeding distributions, migration routes, or timing of migration among populations hampers our ability to identify population processes outside the breeding period....
Identifying movement patterns and spawning areas of Lake Trout in Yellowstone Lake
Robert E. Gresswell, Nicholas A. Heredia, Jason G. Romine, Lee F. G. Gutowsky, Phillip T. Sandstrom, Michael J. Parsley, Patricia E. Bigelow, C. D. Suski, Brian D. Ertel
2017, Yellowstone Science (25) 66-69
No abstract available....
Critical zone properties control the fate of nitrogen during experimental rainfall in montane forests of the Colorado Front Range
Eve-Lyn S. Hinckley, Brian A. Ebel, Rebecca T. Barnes, Sheila F. Murphy, Suzanne P. Anderson
2017, Biogeochemistry (132) 213-231
Several decades of research in alpine ecosystems have demonstrated links among the critical zone, hydrologic response, and the fate of elevated atmospheric nitrogen (N) deposition. Less research has occurred in mid-elevation forests, which may be important for retaining atmospheric N deposition. To explore the fate of N in the montane...
A discrete stage-structured model of California newt population dynamics during a period of drought
Marjorie T. Jones, William R. Milligan, Lee B. Kats, Thomas L. Vandergon, Rodney L. Honeycutt, Robert N. Fisher, Courtney L. Davis, Timothy A. Lucas
2017, Journal of Theoretical Biology (414) 245-253
We introduce a mathematical model for studying the population dynamics under drought of the California newt (Taricha torosa), a species of special concern in the state of California. Since 2012, California has experienced a record-setting drought, and multiple studies predict drought conditions currently underway will persist and even increase in...
Building the vegetation drought response index for Canada (VegDRI-Canada) to monitor agricultural drought: first results
Tsegaye Tadesse, Catherine Champagne, Brian D. Wardlow, Trevor A. Hadwen, Jesslyn F. Brown, Getachew B. Demisse, Yared A. Bayissa, Andrew M. Davidson
2017, GIScience and Remote Sensing (54) 230-257
Drought is a natural climatic phenomenon that occurs throughout the world and impacts many sectors of society. To help decision-makers reduce the impacts of drought, it is important to improve monitoring tools that provide relevant and timely information in support of drought mitigation decisions. Given that drought is a complex...
Four new species of Eimeria (Apicomplexa: Eimeriidae) from Emoia spp. Skinks (Sauria: Scincidae), from Papua New Guinea and the Insular Pacific
Chris T. McAllister, Donald W. Duszynski, Christopher C. Austin, Robert N. Fisher
2017, Journal of Parasitology (103) 103-110
Between September and November 1991, 54 adult skinks from 15 species were collected by hand or blowpipe from several localities on Rarotonga, Cook Islands, Ovalau Island, Fiji, and Papua New Guinea (PNG), and their feces were examined for coccidians. Species included 5 seaside skinks (Emoia atrocostata), 1 Pacific blue-tailed skink...
Modeling strong‐motion recordings of the 2010 Mw 8.8 Maule, Chile, earthquake with high stress‐drop subevents and background slip
Arthur D. Frankel
2017, Bulletin of the Seismological Society of America (107) 372-386
Strong‐motion recordings of the Mw 8.8 Maule earthquake were modeled using a compound rupture model consisting of (1) a background slip distribution with large correlation lengths, relatively low slip velocity, and long peak rise time of slip of about 10 s and (2) high stress‐drop subevents (asperities) on the deeper portion of the rupture...
Changes in aquatic vegetation and floodplain land cover in the Upper Mississippi and Illinois rivers (1989–2000–2010)
Nathan R. De Jager, Jason J. Rohweder
2017, Environmental Monitoring and Assessment (189) 1-14
Quantifying changes in the cover of river-floodplain systems can provide important insights into the processes that structure these landscapes as well as the potential consequences to the ecosystem services they provide. We examined net changes in 13 different aquatic and floodplain land cover classes using photo interpreted maps of the...