Anadromous salmonids in the Delta: New science 2006–2016
Russell W. Perry, Rebecca A. Buchanan, Patricia L. Brandes, Jon R. Burau, Joshua A Israel
2016, San Francisco Estuary and Watershed Science (14)
As juvenile salmon enter the Sacramento–SanJoaquin River Delta (“the Delta”) they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades...
Tick-, mosquito-, and rodent-borne parasite sampling designs for the National Ecological Observatory Network
Yuri P. Springer, David Hoekman, Pieter T. J. Johnson, Paul A. Duffy, Rebecca A. Hufft, David T. Barnett, Brian F. Allan, Brian R. Amman, Christopher M. Barker, Roberto Barrera, Charles B. Beard, Lorenza Beati, Mike Begon, Mark S. Blackmore, William E. Bradshaw, Dustin Brisson, Charles H. Calisher, James E. Childs, Maria A. Diuk-Wasser, Richard J. Douglass, Rebecca J. Eisen, Desmond H. Foley, Janet E. Foley, Holly D. Gaff, Scott L. Gardner, Howard S. Ginsberg, Gregory E. Glass, Sarah A. Hamer, Mary H. Hayden, Brian Hjelle, Christina M. Holzapfel, Steven A. Juliano, Laura D. Kramer, Amy J. Kuenzi, Shannon L. LaDeau, Todd P. Livdahl, James N. Mills, Chester G. Moore, Serge Morand, Roger S. Nasci, Nicholas H. Ogden, Richard S. Ostfeld, Robert R. Parmenter, Joseph Piesman, William K. Reisen, Harry M. Savage, Daniel E. Sonenshine, Andrea Swei, Michael J. Yabsley
2016, Ecosphere (7)
Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data...
Large wind ripples on Mars: A record of atmospheric evolution
M. G. A. Lapotre, R. C. Ewing, M. P. Lamb, W. W. Fischer, J. P. Grotzinger, D. M. Rubin, K. W. Lewis, M. J. Ballard, Mitch D. Day, S. Gupta, S. G. Banham, N. T. Bridges, D. J. Des Marais, A. A. Fraeman, J. A. Grant, Kenneth E. Herkenhoff, D. W. Ming, M. A. Mischna, M. S. Rice, D. Y. Sumner, A. R. Vasavada, R. A. Yingst
2016, Science (353) 55-58
Wind blowing over sand on Earth produces decimeter-wavelength ripples and hundred-meter– to kilometer-wavelength dunes: bedforms of two distinct size modes. Observations from the Mars Science Laboratory Curiosity rover and the Mars Reconnaissance Orbiter reveal that Mars hosts a third stable wind-driven bedform, with meter-scale wavelengths. These bedforms are spatially uniform...
Esperance: Multiple episodes of aqueous alteration involving fracture fills and coatings at Matijevic Hill, Mars
Benton C. Clark, Richard V. Morris, Kenneth E. Herkenhoff, William H. Farrand, Ralf Gellert, Bradley L. Jolliff, Raymond E. Arvidson, Steven W. Squyres, David W. Mittelfehldt, Douglas W. Ming, Albert S. Yen
2016, American Mineralogist (101) 1515-1526
In the search for evidence of past aqueous activity by the Mars Exploration Rover Opportunity, fracture-filling veins and rock coatings are prime candidates for exploration. At one location within a segment of remaining rim material surrounding Endeavour Crater, a set of “boxwork” fractures in an outcrop called Esperance are filled...
Exploration review
David R. Wilburn, Nick Karl
2016, Mining Engineering 30-51
This summary of international mineral exploration activities for the year 2015 draws upon information from industry sources, published literature, the SNL Metals & Mining (SNL) (Charlottesville, VA) data base, and specialists in the U.S. Geological Survey (USGS) National Minerals Information Center. The summary provides data on exploration budgets by region...
A water balance model to estimate flow through the Old and Middle River corridor
Stephen W. Andrews, Edward S. Gross, Paul H. Hutton
2016, San Francisco Estuary and Watershed Science (14)
We applied a water balance model to predict tidally averaged (subtidal) flows through the Old River and Middle River corridor in the Sacramento–San Joaquin Delta. We reviewed the dynamics that govern subtidal flows and water levels and adopted a simplified representation. In this water balance approach, we estimated...
Simulated effect of topography and soil properties on hydrologic response and landslide potential under variable rainfall conditions in the Oregon Coast Range, USA
Benjamin B. Mirus, Joel B. Smith, Jonathan W. Godt, R.L. Baum, Jeffrey A. Coe
2016, Conference Paper, Landslides and engineered slopes. Experience, theory and practice Proceedings of the 12th International Symposium on Landslides
No abstract available....
Detection and quantification of hydrocarbons in sediments
Jeff Wynn, Mike Williamson, Jeff Frank
2016, Conference Paper, OCEANS 2016 MTS/IEEE Monterey
A new technology developed by the US Geological Survey now allows for fast, direct detection of hydrocarbon plumes both in rivers and drifting in the deep ocean. Recent experiments show that the method can also detect and quantify hydrocarbons buried in river sediments and estuaries. This approach uses a variant...
Acoustic surveys of Hawaiian Hoary Bats in Kahikinui Forest Reserve and Nakula Natural Area Reserve on the Island of Maui
Christopher M. Todd, Corinna A. Pinzari, Frank Bonaccorso
2016, Hawai‘i Cooperative Studies Unit Technical Report HCSU-078
The Kahikinui Forest Reserve and the adjoining Nakula Natural Area Reserve (KFR-NNAR) was established in 2011 as a conservation area on the leeward slope of Haleakalā Volcano on the island of Maui to protect unique natural features and endangered species including the Hawaiian hoary bat, Lasiurus cinereus semotus. We recorded...
Seasonal sediment dynamics shape temperate bedrock reef communities
Jared D. Figurski, Jan Freiwald, Steve I. Lonhart, Curt D. Storlazzi
2016, Marine Ecology Progress Series (552) 19-29
Mobilized seafloor sediment can impact benthic reef communities through burial, scour, and turbidity. These processes are ubiquitous in coastal oceans and, through their influence on the survival, fitness, and interactions of species, can alter the structure and function of benthic communities. In northern Monterey Bay, California, USA, as much as...
Infectious diseases of wolves in Yellowstone
Emily S. Almberg, Paul C. Cross, Peter J. Hudson, Andrew P. Dobson, Douglas W. Smith, Daniel R. Stahler
2016, Yellowstone Science (24) 47-49
The summer of 2005 began with such promise for wolves in Yellowstone. The population had been at an all-time high the last few years, and the wolves appeared to be in good condition. Several packs had been particularly busy during the breeding season, and early summer pup counts suggested another...
Accretionary lapilli: what’s holding them together?
Paul M. Adams, David K. Lynch, David C. Buesch
2016, Conference Paper, Going LOCO: Investigations along the Lower Colorado River: 2016 Desert Symposium Field Guide and Proceedings
Accretionary lapilli from Tagus cone, Isla Isabela, Galápagos were analyzed using scanning electron microscope (SEM) and energy-dispersive X-ray spectroscopy (EDS) techniques. Our main findings are (1) the lapilli formed and hardened in a few minutes while still aloft in the dispersing eruption column. (2) Palagonite rinds developed first on the...
A long-term study of ecological impacts of river channelization on the population of an endangered fish: Lessons learned for assessment and restoration
James H. Roberts, Gregory B. Anderson, Paul L. Angermeier
2016, Water (8) 1-38
Projects to assess environmental impact or restoration success in rivers focus on project-specific questions but can also provide valuable insights for future projects. Both restoration actions and impact assessments can become “adaptive” by using the knowledge gained from long-term monitoring and analysis to revise the actions, monitoring, conceptual model, or...
Effects of seasonal weather on breeding phenology and reproductive success of alpine ptarmigan in Colorado
Gregory T. Wann, Cameron L. Aldridge, Clait E. Braun
2016, PLoS ONE (11) 1-16
Animal populations occurring at high elevations are often assumed to be in peril of extinctions or local extirpations due to elevational-dispersal limitations and thermoregulatory constraints as habitats change and warm. However, long-term monitoring of high-elevation populations is uncommon relative to those occurring at lower elevations, and evidence supporting this assumption...
Age, sex and social influences on adult survival in the cooperatively breeding Karoo Scrub-robin
Penn Lloyd, Thomas E. Martin, Andrew Taylor, Anne Braae, Res Altwegg
2016, Emu (116) 394-401
Among cooperatively breeding species, helpers are hypothesised to increase the survival of breeders by reducing breeder workload in offspring care and increased group vigilance against predators. Furthermore, parental nepotism or other benefits of group living may provide a survival benefit to young that delay dispersal to help. We tested these...
Application of a hybrid model to reduce bias and improve precision in population estimates for elk (Cervus elaphus) inhabiting a cold desert ecosystem
Kathryn A. Schoenecker, Bruce C. Lubow
2016, Journal of King Saud University - Science (28) 205-215
Accurately estimating the size of wildlife populations is critical to wildlife management and conservation of species. Raw counts or “minimum counts” are still used as a basis for wildlife management decisions. Uncorrected raw counts are not only negatively biased due to failure to account for undetected animals, but also provide...
Reproduction in moose at their southern range limit
Joel S. Ruprecht, Kent Hersey, Konrad Hafen, Kevin L. Monteith, Nicholas J. DeCesare, Matthew J. Kauffman, Daniel R. MacNulty
2016, Journal of Mammalogy (97) 1355-1365
Reproduction is a critical fitness component in large herbivores. Biogeographic models predict that populations occurring at the edges of the range may have compromised reproductive rates because of inferior habitat at range peripheries. When reproductive rates are chronically low, ungulate populations may lack the resiliency to rebound quickly after periods...
Variability in the sensitivity among model simulations of permafrost and carbon dynamics in the permafrost region between 1960 and 2009
A. David McGuire, Charles Koven, David M. Lawrence, Joy S. Clein, Jiangyang Xia, Christian Beer, Eleanor J. Burke, Guangsheng Chen, Xiaodong Chen, Christine Delire, Elchin Jafarov, Andrew H. MacDougall, Sergey S. Marchenko, Dmitry J. Nicolsky, Shushi Peng, Annette Rinke, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Bertrand Decharme, Altug Ekici, Isabelle Gouttevin, Tomohiro Hajima, Daniel J. Hayes, Duoying Ji, Gerhard Krinner, Dennis P. Lettenmaier, Yiqi Luo, Paul A. Miller, John C. Moore, Vladimir Romanovsky, Christina Schädel, Kevin Schaefer, Edward A.G. Schuur, Benjamin Smith, Tetsuo Sueyoshi, Qianlai Zhuang
2016, Global Biogeochemical Cycles (30) 1015-1037
A significant portion of the large amount of carbon (C) currently stored in soils of the permafrost region in the Northern Hemisphere has the potential to be emitted as the greenhouse gases CO2and CH4 under a warmer climate. In this study we evaluated the variability in the sensitivity of permafrost and...
Large herbivores surf waves of green-up during spring
Jerod Merkle, Kevin L. Monteith, Ellen O. Aikens, Matthew M. Hayes, Kent Hersey, Arthur D. Middleton, Brendan Oates, Hall Sawyer, Brandon Scurlock, Matthew J. Kauffman
2016, Proceedings of the Royal Society B: Biological Sciences (283) 1-8
The green wave hypothesis (GWH) states that migrating animals should track or ‘surf’ high-quality forage at the leading edge of spring green-up. To index such high-quality forage, recent work proposed the instantaneous rate of green-up (IRG), i.e. rate of change in the normalized difference vegetation index over time. Despite this...
Slab melting and magma formation beneath the southern Cascade arc
Kristina J. Walowski, Paul J. Wallace, Michael A. Clynne, D.J. Rasmussen, D. Weis
2016, Earth and Planetary Science Letters (446) 100-112
The processes that drive magma formation beneath the Cascade arc and other warm-slab subduction zones have been debated because young oceanic crust is predicted to largely dehydrate beneath the forearc during subduction. In addition, geochemical variability along strike in the Cascades has led to contrasting interpretations about the role of...
Common carp disrupt ecosystem structure and function through middle-out effects
Mark A. Kaemingk, Jeffrey C. Jolley, Craig P. Paukert, David W. Willis, Kjetil R. Henderson, Richard S. Holland, Greg A. Wanner, Mark L. Lindvall
2016, Marine and Freshwater Research (68) 718-731
Middle-out effects or a combination of top-down and bottom-up processes create many theoretical and empirical challenges in the realm of trophic ecology. We propose using specific autecology or species trait (i.e. behavioural) information to help explain and understand trophic dynamics that may involve complicated and non-unidirectional trophic interactions. The common...
A large refined catalog of earthquake relocations and focal mechanisms for the Island of Hawai'i and its seismotectonic implications
Guoqing Lin, Paul G. Okubo
2016, Journal of Geophysical Research (121) 5031-5048
We present high-quality focal mechanisms based on a refined earthquake location catalog for the Island of Hawai'i, focusing on Mauna Loa and Kīlauea volcanoes. The relocation catalog is based on first-arrival times and waveform data of both compressional and shear waves for about 180,000 events on and near the Island...
A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.
Islam T.M. Hussein, Eric J. Ma, Brandt W. Meixell, Nichola J. Hill, Mark S. Lindberg, Randy A. Albrecht, Justin Bahl, Jonathan A. Runstadler
2016, Infection, Genetics and Evolution (41) 279-288
H9N2 influenza A viruses are on the list of potentially pandemic subtypes. Therefore, it is important to understand how genomic reassortment and genetic polymorphisms affect phenotypes of H9N2 viruses circulating in the wild bird reservoir. A comparative genetic analysis of North American H9N2 isolates of wild bird origin identified a...
Preface: Impacts of extreme climate events and disturbances on carbon dynamics
Jingfeng Xiao, Shuguang Liu, Paul C. Stoy
2016, Biogeosciences (13) 3665-3675
The impacts of extreme climate events and disturbances (ECE&D) on the carbon cycle have received growing attention in recent years. This special issue showcases a collection of recent advances in understanding the impacts of ECE&D on carbon cycling. Notable advances include quantifying how harvesting activities impact forest structure, carbon pool...
Diet breadth and variability in Sander spp. inferred from stable isotopes
M.J. Fincel, Steven R. Chipps, B. D. S. Graeb, M. L. Brown
2016, River Research and Applications (32) 984-991
We used stable isotopes of carbon and nitrogen to evaluate trophic similarity between sauger Sander canadensis and walleye S. vitreus in three Missouri River impoundments characterized by unique differences in riverine habitat. Mean δ15N was similar for sauger and walleye in each reservoir ranging from 15.7 to 17.8‰ for sauger and...
